Wall clock time and date at job start Tue Mar 31 2020 17:33:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08998 * 109.52138 * 2 1 4 4 C 1.53195 * 109.49713 * 239.91739 * 2 1 3 5 5 N 1.46924 * 108.77628 * 294.68502 * 4 2 1 6 6 C 1.34777 * 120.63349 * 126.41445 * 5 4 2 7 7 O 1.21690 * 119.99722 * 353.76890 * 6 5 4 8 8 C 1.46718 * 120.00035 * 173.76880 * 6 5 4 9 9 C 1.36339 * 126.64691 * 329.05445 * 8 6 5 10 10 N 1.33688 * 107.45286 * 179.83745 * 9 8 6 11 11 C 1.30612 * 108.99813 * 0.43671 * 10 9 8 12 12 C 1.50704 * 125.42486 * 179.74646 * 11 10 9 13 13 C 1.53002 * 117.49750 * 8.72283 * 12 11 10 14 14 C 1.52994 * 117.50098 * 300.05997 * 12 11 10 15 15 O 1.33664 * 109.15310 * 359.72590 * 11 10 9 16 16 C 1.46928 * 118.74030 * 306.39040 * 5 4 2 17 17 C 1.53193 * 108.77405 * 53.60794 * 16 5 4 18 18 C 1.53034 * 109.49674 * 120.07937 * 2 1 3 19 19 H 1.08999 * 109.45079 * 178.59647 * 18 2 1 20 20 C 1.53000 * 109.46369 * 298.56632 * 18 2 1 21 21 N 1.46497 * 109.47184 * 185.06831 * 20 18 2 22 22 C 1.36936 * 119.99778 * 180.02562 * 21 20 18 23 23 H 1.07999 * 120.00363 * 0.02562 * 22 21 20 24 24 C 1.38811 * 119.99989 * 180.02562 * 22 21 20 25 25 N 1.31622 * 119.99933 * 359.97438 * 24 22 21 26 26 Si 1.86806 * 120.00223 * 180.02562 * 24 22 21 27 27 H 1.48507 * 109.46953 * 359.97438 * 26 24 22 28 28 H 1.48497 * 109.47247 * 119.99388 * 26 24 22 29 29 H 1.48500 * 109.47059 * 239.99998 * 26 24 22 30 30 H 1.08997 * 109.47196 * 299.91611 * 1 2 3 31 31 H 1.09000 * 109.47122 * 59.92089 * 1 2 3 32 32 H 1.09000 * 109.46912 * 179.91690 * 1 2 3 33 33 H 1.08994 * 109.58661 * 174.89204 * 4 2 1 34 34 H 1.09007 * 109.70004 * 54.53963 * 4 2 1 35 35 H 1.08000 * 126.26861 * 0.02562 * 9 8 6 36 36 H 1.09001 * 115.54936 * 154.39323 * 12 11 10 37 37 H 1.08995 * 117.49819 * 359.97438 * 13 12 11 38 38 H 1.09001 * 117.49415 * 145.02311 * 13 12 11 39 39 H 1.08999 * 117.50222 * 214.98147 * 14 12 11 40 40 H 1.09005 * 117.49539 * 359.97438 * 14 12 11 41 41 H 1.09004 * 109.58242 * 293.82665 * 16 5 4 42 42 H 1.08990 * 109.70794 * 173.46574 * 16 5 4 43 43 H 1.08994 * 109.49631 * 185.41740 * 17 16 5 44 44 H 1.09003 * 109.52137 * 65.33614 * 17 16 5 45 45 H 1.09004 * 109.46988 * 65.06547 * 20 18 2 46 46 H 1.08998 * 109.46648 * 305.07218 * 20 18 2 47 47 H 0.96992 * 120.00111 * 0.02562 * 21 20 18 48 48 H 0.96998 * 119.99981 * 0.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0414 -0.7239 -1.2496 5 7 1.6516 -2.1382 -1.1696 6 6 0.9748 -2.7222 -2.1783 7 8 0.5819 -2.0525 -3.1153 8 6 0.7118 -4.1652 -2.1466 9 6 1.4971 -5.1232 -1.5769 10 7 0.8949 -6.3013 -1.7684 11 6 -0.2125 -6.1096 -2.4339 12 6 -1.1770 -7.1886 -2.8543 13 6 -0.9465 -8.5966 -2.3016 14 6 -0.6464 -8.2922 -3.7714 15 8 -0.3544 -4.8040 -2.6824 16 6 2.0140 -2.9041 0.0308 17 6 1.5030 -2.1558 1.2660 18 6 2.0408 -0.7230 1.2483 19 1 3.1305 -0.7444 1.2350 20 6 1.5607 0.0171 2.4984 21 7 2.1481 -0.6029 3.6887 22 6 1.8593 -0.1071 4.9320 23 1 1.1983 0.7407 5.0352 24 6 2.4163 -0.6941 6.0599 25 7 3.2215 -1.7277 5.9342 26 14 2.0219 -0.0182 7.7561 27 1 1.0985 1.1376 7.6260 28 1 1.3776 -1.0774 8.5735 29 1 3.2763 0.4230 8.4171 30 1 -0.3633 0.5125 0.8907 31 1 -0.3633 0.5151 -0.8893 32 1 -0.3633 -1.0277 -0.0015 33 1 3.1275 -0.6463 -1.2981 34 1 1.6028 -0.2738 -2.1403 35 1 2.4324 -4.9598 -1.0624 36 1 -2.2084 -6.8671 -2.9984 37 1 -0.0971 -8.7425 -1.6343 38 1 -1.8264 -9.2014 -2.0825 39 1 -1.3289 -8.6971 -4.5187 40 1 0.4002 -8.2376 -4.0712 41 1 3.0980 -3.0043 0.0867 42 1 1.5574 -3.8928 -0.0123 43 1 1.8481 -2.6628 2.1670 44 1 0.4133 -2.1355 1.2546 45 1 0.4738 -0.0385 2.5585 46 1 1.8686 1.0612 2.4430 47 1 2.7414 -1.3645 3.5961 48 1 3.4260 -2.0789 5.0535 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001184596229.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:33:44 Heat of formation + Delta-G solvation = 36.216556 kcal Electronic energy + Delta-G solvation = -29017.579148 eV Core-core repulsion = 25075.840455 eV Total energy + Delta-G solvation = -3941.738693 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -43.79301 -40.53276 -38.23441 -37.70771 -35.54587 -34.95733 -33.75147 -32.07629 -30.63181 -30.28744 -27.14782 -26.93101 -24.98368 -24.12537 -23.33312 -23.01829 -22.77358 -21.78304 -21.02681 -20.59259 -18.73559 -17.85200 -17.56699 -17.23438 -17.14069 -16.37569 -15.53766 -15.38333 -15.16010 -14.98647 -14.63995 -14.31453 -14.16449 -13.81804 -13.66450 -13.57494 -13.03835 -12.91447 -12.78176 -12.52851 -12.36404 -12.07983 -11.87914 -11.72884 -11.55582 -11.33672 -11.20728 -11.06109 -11.05576 -10.72578 -10.71503 -10.47656 -10.41649 -10.22058 -10.10476 -10.03491 -9.20555 -9.13642 -8.87960 -8.80882 -7.00512 -6.12118 -3.11405 0.54798 1.67857 2.01771 2.72659 2.92290 3.29424 3.50734 3.57065 3.57442 3.66567 4.08980 4.24515 4.39081 4.48010 4.51297 4.62173 4.64510 4.77982 4.86678 4.94953 5.08612 5.09569 5.15356 5.25252 5.31153 5.33857 5.41654 5.51354 5.56979 5.60126 5.65836 5.66403 5.68865 5.72692 5.79964 5.87800 5.92275 6.04882 6.15643 6.25605 6.29858 6.32217 6.49644 6.68433 6.81776 7.00607 7.21784 7.75216 7.80917 8.74497 9.21951 10.08102 10.23071 11.36692 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.013856 B = 0.002665 C = 0.002344 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2020.274011 B =10504.174161 C =11942.724505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.098 4.098 3 H 0.086 0.914 4 C 0.121 3.879 5 N -0.585 5.585 6 C 0.602 3.398 7 O -0.525 6.525 8 C -0.094 4.094 9 C 0.021 3.979 10 N -0.482 5.482 11 C 0.243 3.757 12 C -0.088 4.088 13 C -0.142 4.142 14 C -0.153 4.153 15 O -0.167 6.167 16 C 0.086 3.914 17 C -0.126 4.126 18 C -0.091 4.091 19 H 0.072 0.928 20 C 0.164 3.836 21 N -0.743 5.743 22 C -0.330 4.330 23 H 0.064 0.936 24 C -0.046 4.046 25 N -0.946 5.946 26 Si 1.084 2.916 27 H -0.295 1.295 28 H -0.293 1.293 29 H -0.293 1.293 30 H 0.063 0.937 31 H 0.050 0.950 32 H 0.054 0.946 33 H 0.074 0.926 34 H 0.095 0.905 35 H 0.200 0.800 36 H 0.137 0.863 37 H 0.113 0.887 38 H 0.110 0.890 39 H 0.110 0.890 40 H 0.103 0.897 41 H 0.079 0.921 42 H 0.092 0.908 43 H 0.087 0.913 44 H 0.070 0.930 45 H 0.023 0.977 46 H 0.019 0.981 47 H 0.366 0.634 48 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.852 -9.700 -20.369 23.307 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.117 4.117 3 H 0.105 0.895 4 C -0.001 4.001 5 N -0.319 5.319 6 C 0.389 3.611 7 O -0.402 6.402 8 C -0.150 4.150 9 C -0.122 4.122 10 N -0.211 5.211 11 C 0.039 3.961 12 C -0.107 4.107 13 C -0.180 4.180 14 C -0.191 4.191 15 O -0.052 6.052 16 C -0.036 4.036 17 C -0.164 4.164 18 C -0.110 4.110 19 H 0.091 0.909 20 C 0.037 3.963 21 N -0.389 5.389 22 C -0.461 4.461 23 H 0.082 0.918 24 C -0.243 4.243 25 N -0.591 5.591 26 Si 0.916 3.084 27 H -0.222 1.222 28 H -0.220 1.220 29 H -0.220 1.220 30 H 0.082 0.918 31 H 0.070 0.930 32 H 0.073 0.927 33 H 0.092 0.908 34 H 0.113 0.887 35 H 0.216 0.784 36 H 0.155 0.845 37 H 0.132 0.868 38 H 0.128 0.872 39 H 0.128 0.872 40 H 0.121 0.879 41 H 0.097 0.903 42 H 0.110 0.890 43 H 0.105 0.895 44 H 0.089 0.911 45 H 0.040 0.960 46 H 0.037 0.963 47 H 0.199 0.801 48 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -5.795 -9.869 -19.046 22.220 hybrid contribution -0.273 0.767 -1.727 1.909 sum -6.068 -9.102 -20.773 23.477 Atomic orbital electron populations 1.21872 0.94729 1.01998 1.01736 1.21478 0.96831 0.99606 0.93806 0.89543 1.21822 0.99782 0.78649 0.99820 1.47725 1.55360 1.11954 1.16850 1.16272 0.78832 0.82999 0.83040 1.90855 1.51233 1.63635 1.34485 1.22731 0.90810 0.95361 1.06086 1.23887 1.01588 0.86732 0.99956 1.70305 1.06570 1.27431 1.16785 1.25439 0.94342 0.81312 0.95042 1.20179 0.96510 0.85564 1.08486 1.23151 1.04736 0.93147 0.96932 1.23169 1.03071 0.98730 0.94082 1.84465 1.40465 1.20349 1.59876 1.22414 1.01012 0.95905 0.84265 1.21964 1.01661 0.96031 0.96766 1.21348 1.00258 0.94588 0.94765 0.90943 1.20642 0.95954 0.94620 0.85111 1.42388 1.57193 1.37531 1.01800 1.20091 1.27015 1.13777 0.85195 0.91789 1.25753 0.98221 0.97993 1.02382 1.70831 1.37957 1.25285 1.25076 0.83159 0.75525 0.74765 0.74979 1.22165 1.22014 1.22015 0.91796 0.93043 0.92747 0.90752 0.88660 0.78351 0.84525 0.86815 0.87176 0.87171 0.87878 0.90292 0.89003 0.89499 0.91144 0.95958 0.96328 0.80079 0.93431 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.91 8.38 37.16 0.31 -1.59 16 2 C -0.10 -1.21 2.72 -90.50 -0.25 -1.45 16 3 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 4 C 0.12 1.38 5.84 -3.71 -0.02 1.36 16 5 N -0.59 -7.07 2.41 -174.29 -0.42 -7.49 16 6 C 0.60 8.49 7.63 -12.84 -0.10 8.39 16 7 O -0.53 -8.96 16.53 5.08 0.08 -8.87 16 8 C -0.09 -1.24 6.67 -36.84 -0.25 -1.48 16 9 C 0.02 0.24 9.45 -17.43 -0.16 0.08 16 10 N -0.48 -5.78 10.79 -10.81 -0.12 -5.90 16 11 C 0.24 2.78 7.87 -12.79 -0.10 2.68 16 12 C -0.09 -0.67 6.33 -91.77 -0.58 -1.25 16 13 C -0.14 -0.86 10.13 -26.69 -0.27 -1.13 16 14 C -0.15 -0.88 10.24 -26.69 -0.27 -1.15 16 15 O -0.17 -2.27 10.79 4.30 0.05 -2.22 16 16 C 0.09 0.96 5.22 -3.71 -0.02 0.94 16 17 C -0.13 -1.76 4.90 -26.61 -0.13 -1.89 16 18 C -0.09 -1.33 1.96 -90.58 -0.18 -1.51 16 19 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 20 C 0.16 3.18 5.18 -4.04 -0.02 3.16 16 21 N -0.74 -18.14 5.32 -59.91 -0.32 -18.45 16 22 C -0.33 -9.24 9.99 -15.06 -0.15 -9.39 16 23 H 0.06 1.79 7.83 -52.49 -0.41 1.38 16 24 C -0.05 -1.33 5.50 -17.43 -0.10 -1.43 16 25 N -0.95 -28.83 13.70 55.49 0.76 -28.07 16 26 Si 1.08 25.96 29.92 -169.99 -5.09 20.88 16 27 H -0.30 -6.67 7.11 56.52 0.40 -6.26 16 28 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 29 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 30 H 0.06 0.87 6.58 -51.93 -0.34 0.53 16 31 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.05 0.76 5.97 -51.93 -0.31 0.45 16 33 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 34 H 0.10 1.14 7.00 -51.93 -0.36 0.78 16 35 H 0.20 1.75 6.52 -52.49 -0.34 1.41 16 36 H 0.14 0.81 8.14 -51.93 -0.42 0.38 16 37 H 0.11 0.83 7.87 -51.93 -0.41 0.42 16 38 H 0.11 0.44 8.14 -51.93 -0.42 0.01 16 39 H 0.11 0.40 8.14 -51.93 -0.42 -0.02 16 40 H 0.10 0.68 8.14 -51.93 -0.42 0.25 16 41 H 0.08 0.76 8.14 -51.93 -0.42 0.33 16 42 H 0.09 0.97 4.31 -51.93 -0.22 0.75 16 43 H 0.09 1.38 7.15 -51.93 -0.37 1.01 16 44 H 0.07 1.05 6.34 -51.93 -0.33 0.72 16 45 H 0.02 0.45 6.74 -51.93 -0.35 0.10 16 46 H 0.02 0.38 8.14 -51.93 -0.42 -0.05 16 47 H 0.37 8.98 5.68 -40.82 -0.23 8.75 16 48 H 0.25 7.56 6.77 -40.82 -0.28 7.29 16 LS Contribution 378.97 15.07 5.71 5.71 Total: -1.00 -34.62 378.97 -8.61 -43.23 By element: Atomic # 1 Polarization: 13.85 SS G_CDS: -6.98 Total: 6.87 kcal Atomic # 6 Polarization: -3.39 SS G_CDS: -2.28 Total: -5.67 kcal Atomic # 7 Polarization: -59.82 SS G_CDS: -0.09 Total: -59.91 kcal Atomic # 8 Polarization: -11.23 SS G_CDS: 0.13 Total: -11.10 kcal Atomic # 14 Polarization: 25.96 SS G_CDS: -5.09 Total: 20.88 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -34.62 -8.61 -43.23 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001184596229.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.443 kcal (2) G-P(sol) polarization free energy of solvation -34.620 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.823 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.607 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.226 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.217 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds