Wall clock time and date at job start Tue Mar 31 2020 17:33:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08998 * 109.52138 * 2 1 4 4 C 1.53195 * 109.49713 * 239.91739 * 2 1 3 5 5 N 1.46924 * 108.77628 * 294.68502 * 4 2 1 6 6 C 1.34777 * 120.63349 * 126.41445 * 5 4 2 7 7 O 1.21690 * 119.99722 * 353.76890 * 6 5 4 8 8 C 1.46718 * 120.00035 * 173.76880 * 6 5 4 9 9 C 1.36339 * 126.64691 * 329.05445 * 8 6 5 10 10 N 1.33688 * 107.45286 * 179.83745 * 9 8 6 11 11 C 1.30612 * 108.99813 * 0.43671 * 10 9 8 12 12 C 1.50704 * 125.42486 * 179.74646 * 11 10 9 13 13 C 1.53002 * 117.49750 * 8.72283 * 12 11 10 14 14 C 1.52994 * 117.50098 * 300.05997 * 12 11 10 15 15 O 1.33664 * 109.15310 * 359.72590 * 11 10 9 16 16 C 1.46928 * 118.74030 * 306.39040 * 5 4 2 17 17 C 1.53193 * 108.77405 * 53.60794 * 16 5 4 18 18 C 1.53034 * 109.49674 * 120.07937 * 2 1 3 19 19 H 1.08999 * 109.45079 * 178.59647 * 18 2 1 20 20 C 1.53000 * 109.46369 * 298.56632 * 18 2 1 21 21 N 1.46497 * 109.47184 * 185.06831 * 20 18 2 22 22 C 1.36936 * 119.99778 * 180.02562 * 21 20 18 23 23 H 1.07999 * 120.00363 * 0.02562 * 22 21 20 24 24 C 1.38811 * 119.99989 * 180.02562 * 22 21 20 25 25 N 1.31622 * 119.99933 * 359.97438 * 24 22 21 26 26 Si 1.86806 * 120.00223 * 180.02562 * 24 22 21 27 27 H 1.48507 * 109.46953 * 359.97438 * 26 24 22 28 28 H 1.48497 * 109.47247 * 119.99388 * 26 24 22 29 29 H 1.48500 * 109.47059 * 239.99998 * 26 24 22 30 30 H 1.08997 * 109.47196 * 299.91611 * 1 2 3 31 31 H 1.09000 * 109.47122 * 59.92089 * 1 2 3 32 32 H 1.09000 * 109.46912 * 179.91690 * 1 2 3 33 33 H 1.08994 * 109.58661 * 174.89204 * 4 2 1 34 34 H 1.09007 * 109.70004 * 54.53963 * 4 2 1 35 35 H 1.08000 * 126.26861 * 0.02562 * 9 8 6 36 36 H 1.09001 * 115.54936 * 154.39323 * 12 11 10 37 37 H 1.08995 * 117.49819 * 359.97438 * 13 12 11 38 38 H 1.09001 * 117.49415 * 145.02311 * 13 12 11 39 39 H 1.08999 * 117.50222 * 214.98147 * 14 12 11 40 40 H 1.09005 * 117.49539 * 359.97438 * 14 12 11 41 41 H 1.09004 * 109.58242 * 293.82665 * 16 5 4 42 42 H 1.08990 * 109.70794 * 173.46574 * 16 5 4 43 43 H 1.08994 * 109.49631 * 185.41740 * 17 16 5 44 44 H 1.09003 * 109.52137 * 65.33614 * 17 16 5 45 45 H 1.09004 * 109.46988 * 65.06547 * 20 18 2 46 46 H 1.08998 * 109.46648 * 305.07218 * 20 18 2 47 47 H 0.96992 * 120.00111 * 0.02562 * 21 20 18 48 48 H 0.96998 * 119.99981 * 0.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0414 -0.7239 -1.2496 5 7 1.6516 -2.1382 -1.1696 6 6 0.9748 -2.7222 -2.1783 7 8 0.5819 -2.0525 -3.1153 8 6 0.7118 -4.1652 -2.1466 9 6 1.4971 -5.1232 -1.5769 10 7 0.8949 -6.3013 -1.7684 11 6 -0.2125 -6.1096 -2.4339 12 6 -1.1770 -7.1886 -2.8543 13 6 -0.9465 -8.5966 -2.3016 14 6 -0.6464 -8.2922 -3.7714 15 8 -0.3544 -4.8040 -2.6824 16 6 2.0140 -2.9041 0.0308 17 6 1.5030 -2.1558 1.2660 18 6 2.0408 -0.7230 1.2483 19 1 3.1305 -0.7444 1.2350 20 6 1.5607 0.0171 2.4984 21 7 2.1481 -0.6029 3.6887 22 6 1.8593 -0.1071 4.9320 23 1 1.1983 0.7407 5.0352 24 6 2.4163 -0.6941 6.0599 25 7 3.2215 -1.7277 5.9342 26 14 2.0219 -0.0182 7.7561 27 1 1.0985 1.1376 7.6260 28 1 1.3776 -1.0774 8.5735 29 1 3.2763 0.4230 8.4171 30 1 -0.3633 0.5125 0.8907 31 1 -0.3633 0.5151 -0.8893 32 1 -0.3633 -1.0277 -0.0015 33 1 3.1275 -0.6463 -1.2981 34 1 1.6028 -0.2738 -2.1403 35 1 2.4324 -4.9598 -1.0624 36 1 -2.2084 -6.8671 -2.9984 37 1 -0.0971 -8.7425 -1.6343 38 1 -1.8264 -9.2014 -2.0825 39 1 -1.3289 -8.6971 -4.5187 40 1 0.4002 -8.2376 -4.0712 41 1 3.0980 -3.0043 0.0867 42 1 1.5574 -3.8928 -0.0123 43 1 1.8481 -2.6628 2.1670 44 1 0.4133 -2.1355 1.2546 45 1 0.4738 -0.0385 2.5585 46 1 1.8686 1.0612 2.4430 47 1 2.7414 -1.3645 3.5961 48 1 3.4260 -2.0789 5.0535 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001184596229.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:33:44 Heat of formation + Delta-G solvation = 13.027223 kcal Electronic energy + Delta-G solvation = -29018.584713 eV Core-core repulsion = 25075.840455 eV Total energy + Delta-G solvation = -3942.744258 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -44.70628 -41.60049 -39.40775 -38.27951 -36.97230 -36.14284 -35.10358 -33.43452 -31.96726 -31.54820 -28.44322 -28.10553 -25.99476 -25.40583 -24.91017 -23.94812 -23.32394 -23.11889 -21.85205 -21.62981 -19.91385 -19.33716 -18.73843 -18.36344 -18.11443 -17.40954 -16.81539 -16.48176 -16.24894 -15.98509 -15.71544 -15.58037 -15.38368 -15.30137 -15.00482 -14.66559 -14.42567 -14.19694 -13.75268 -13.67528 -13.36935 -12.88173 -12.86560 -12.69154 -12.66216 -12.54310 -12.46082 -12.22726 -12.15741 -11.92718 -11.88987 -11.79329 -11.59341 -11.55281 -11.49569 -11.21402 -11.15166 -10.90552 -10.07647 -9.79780 -9.07530 -8.38770 -5.31936 -0.38603 0.76985 1.14412 1.58312 1.69113 1.71895 1.81027 2.02127 2.67687 2.70536 2.85318 3.21627 3.40034 3.55020 3.59775 3.61261 3.69617 3.71871 3.88401 3.92010 3.95460 4.07872 4.13756 4.25241 4.28417 4.33835 4.45625 4.54924 4.59497 4.65659 4.71631 4.73067 4.74453 4.83956 4.86510 4.92021 4.96732 5.04971 5.06261 5.08747 5.13939 5.19136 5.21977 5.36338 5.48741 5.60041 5.98598 6.31669 6.52584 6.71705 7.11990 8.02751 8.12999 9.13877 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.013856 B = 0.002665 C = 0.002344 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2020.274011 B =10504.174161 C =11942.724505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.089 4.089 3 H 0.101 0.899 4 C 0.122 3.878 5 N -0.578 5.578 6 C 0.604 3.396 7 O -0.563 6.563 8 C -0.124 4.124 9 C 0.037 3.963 10 N -0.501 5.501 11 C 0.248 3.752 12 C -0.112 4.112 13 C -0.134 4.134 14 C -0.139 4.139 15 O -0.188 6.188 16 C 0.094 3.906 17 C -0.121 4.121 18 C -0.079 4.079 19 H 0.078 0.922 20 C 0.164 3.836 21 N -0.753 5.753 22 C -0.334 4.334 23 H 0.061 0.939 24 C -0.102 4.102 25 N -0.974 5.974 26 Si 1.129 2.871 27 H -0.275 1.275 28 H -0.291 1.291 29 H -0.290 1.290 30 H 0.053 0.947 31 H 0.059 0.941 32 H 0.041 0.959 33 H 0.099 0.901 34 H 0.092 0.908 35 H 0.224 0.776 36 H 0.154 0.846 37 H 0.098 0.902 38 H 0.135 0.865 39 H 0.137 0.863 40 H 0.092 0.908 41 H 0.105 0.895 42 H 0.099 0.901 43 H 0.067 0.933 44 H 0.056 0.944 45 H 0.015 0.985 46 H 0.016 0.984 47 H 0.363 0.637 48 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.875 -10.316 -21.061 24.176 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.109 4.109 3 H 0.119 0.881 4 C 0.001 3.999 5 N -0.310 5.310 6 C 0.391 3.609 7 O -0.443 6.443 8 C -0.180 4.180 9 C -0.106 4.106 10 N -0.230 5.230 11 C 0.044 3.956 12 C -0.131 4.131 13 C -0.171 4.171 14 C -0.177 4.177 15 O -0.074 6.074 16 C -0.028 4.028 17 C -0.159 4.159 18 C -0.098 4.098 19 H 0.097 0.903 20 C 0.038 3.962 21 N -0.398 5.398 22 C -0.465 4.465 23 H 0.079 0.921 24 C -0.294 4.294 25 N -0.622 5.622 26 Si 0.955 3.045 27 H -0.200 1.200 28 H -0.218 1.218 29 H -0.217 1.217 30 H 0.072 0.928 31 H 0.078 0.922 32 H 0.060 0.940 33 H 0.117 0.883 34 H 0.111 0.889 35 H 0.240 0.760 36 H 0.171 0.829 37 H 0.117 0.883 38 H 0.153 0.847 39 H 0.155 0.845 40 H 0.111 0.889 41 H 0.124 0.876 42 H 0.117 0.883 43 H 0.085 0.915 44 H 0.075 0.925 45 H 0.033 0.967 46 H 0.034 0.966 47 H 0.196 0.804 48 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -5.818 -10.471 -19.756 23.104 hybrid contribution -0.325 0.920 -1.548 1.830 sum -6.143 -9.551 -21.304 24.142 Atomic orbital electron populations 1.21825 0.95390 1.01132 1.01622 1.21428 0.96145 1.00279 0.93025 0.88096 1.21897 1.01187 0.78013 0.98830 1.47748 1.54529 1.12267 1.16469 1.16403 0.78352 0.83296 0.82824 1.90825 1.52920 1.64584 1.35989 1.22674 0.91812 0.95271 1.08199 1.24281 1.01712 0.86103 0.98493 1.70368 1.07225 1.27592 1.17769 1.26331 0.94479 0.81236 0.93576 1.20575 0.96681 0.85308 1.10494 1.23239 1.05161 0.91876 0.96872 1.23279 1.03040 0.96841 0.94542 1.84454 1.41044 1.21349 1.60540 1.22425 1.02483 0.95492 0.82367 1.21845 1.00817 0.95839 0.97409 1.21224 1.00482 0.94595 0.93473 0.90332 1.20769 0.95210 0.94742 0.85519 1.42555 1.57334 1.37627 1.02305 1.20401 1.26076 1.13247 0.86797 0.92131 1.27099 0.98193 0.98031 1.06041 1.70931 1.39779 1.26779 1.24748 0.82583 0.75798 0.74892 0.71257 1.20049 1.21770 1.21656 0.92804 0.92194 0.94004 0.88259 0.88946 0.75965 0.82886 0.88311 0.84694 0.84511 0.88924 0.87650 0.88292 0.91480 0.92480 0.96743 0.96601 0.80389 0.94274 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.65 8.38 71.98 0.60 -3.05 16 2 C -0.09 -2.07 2.72 -10.71 -0.03 -2.10 16 3 H 0.10 2.12 8.14 -2.39 -0.02 2.10 16 4 C 0.12 2.55 5.84 86.36 0.50 3.05 16 5 N -0.58 -13.20 2.41 -823.56 -1.98 -15.19 16 6 C 0.60 16.81 7.63 86.46 0.66 17.47 16 7 O -0.56 -19.35 16.53 -4.20 -0.07 -19.42 16 8 C -0.12 -3.25 6.67 24.04 0.16 -3.09 16 9 C 0.04 0.80 9.45 83.97 0.79 1.59 16 10 N -0.50 -11.65 10.79 -302.89 -3.27 -14.92 16 11 C 0.25 5.54 7.87 88.29 0.69 6.24 16 12 C -0.11 -1.55 6.33 -11.54 -0.07 -1.62 16 13 C -0.13 -1.36 10.13 30.62 0.31 -1.05 16 14 C -0.14 -1.32 10.24 30.62 0.31 -1.01 16 15 O -0.19 -5.15 10.79 -7.00 -0.08 -5.23 16 16 C 0.09 1.94 5.22 86.36 0.45 2.39 16 17 C -0.12 -3.32 4.90 30.68 0.15 -3.17 16 18 C -0.08 -2.23 1.96 -10.77 -0.02 -2.25 16 19 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16 20 C 0.16 6.32 5.18 86.38 0.45 6.76 16 21 N -0.75 -36.96 5.32 -343.46 -1.83 -38.78 16 22 C -0.33 -18.72 9.99 84.03 0.84 -17.88 16 23 H 0.06 3.38 7.83 -2.91 -0.02 3.36 16 24 C -0.10 -5.88 5.50 84.86 0.47 -5.41 16 25 N -0.97 -59.82 13.70 21.65 0.30 -59.53 16 26 Si 1.13 51.98 29.92 68.60 2.05 54.03 16 27 H -0.28 -11.62 7.11 99.48 0.71 -10.91 16 28 H -0.29 -13.20 7.11 99.48 0.71 -12.49 16 29 H -0.29 -13.11 7.11 99.48 0.71 -12.40 16 30 H 0.05 1.47 6.58 -2.39 -0.02 1.45 16 31 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 32 H 0.04 1.17 5.97 -2.39 -0.01 1.15 16 33 H 0.10 1.65 8.14 -2.39 -0.02 1.63 16 34 H 0.09 2.08 7.00 -2.38 -0.02 2.07 16 35 H 0.22 3.46 6.52 -2.91 -0.02 3.45 16 36 H 0.15 1.56 8.14 -2.39 -0.02 1.54 16 37 H 0.10 1.34 7.87 -2.39 -0.02 1.32 16 38 H 0.14 0.69 8.14 -2.39 -0.02 0.67 16 39 H 0.14 0.58 8.14 -2.39 -0.02 0.56 16 40 H 0.09 1.10 8.14 -2.38 -0.02 1.08 16 41 H 0.11 1.71 8.14 -2.38 -0.02 1.69 16 42 H 0.10 1.95 4.31 -2.39 -0.01 1.94 16 43 H 0.07 2.14 7.15 -2.39 -0.02 2.12 16 44 H 0.06 1.71 6.34 -2.39 -0.02 1.70 16 45 H 0.01 0.59 6.74 -2.38 -0.02 0.58 16 46 H 0.02 0.63 8.14 -2.39 -0.02 0.61 16 47 H 0.36 18.05 5.68 -92.71 -0.53 17.53 16 48 H 0.25 14.90 6.77 -92.71 -0.63 14.28 16 Total: -1.00 -75.60 378.97 2.00 -73.60 By element: Atomic # 1 Polarization: 27.96 SS G_CDS: 0.61 Total: 28.57 kcal Atomic # 6 Polarization: -9.41 SS G_CDS: 6.27 Total: -3.14 kcal Atomic # 7 Polarization: -121.64 SS G_CDS: -6.78 Total: -128.42 kcal Atomic # 8 Polarization: -24.50 SS G_CDS: -0.14 Total: -24.64 kcal Atomic # 14 Polarization: 51.98 SS G_CDS: 2.05 Total: 54.03 kcal Total: -75.60 2.00 -73.60 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001184596229.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.628 kcal (2) G-P(sol) polarization free energy of solvation -75.605 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.601 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds