Wall clock time and date at job start Tue Mar 31 2020 17:33:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08996 * 109.52473 * 2 1 4 4 C 1.53192 * 109.49641 * 239.91825 * 2 1 3 5 5 N 1.46923 * 108.77694 * 185.41467 * 4 2 1 6 6 C 1.34781 * 120.63245 * 233.63179 * 5 4 2 7 7 O 1.21686 * 119.99818 * 356.28805 * 6 5 4 8 8 C 1.46723 * 120.00082 * 176.28658 * 6 5 4 9 9 C 1.36339 * 126.64017 * 43.29085 * 8 6 5 10 10 N 1.33695 * 107.44825 * 179.89566 * 9 8 6 11 11 C 1.30615 * 108.99758 * 0.37835 * 10 9 8 12 12 C 1.50700 * 125.42673 * 179.79144 * 11 10 9 13 13 C 1.53003 * 117.49747 * 8.71241 * 12 11 10 14 14 C 1.53008 * 117.49386 * 300.05647 * 12 11 10 15 15 O 1.33662 * 109.15353 * 359.75951 * 11 10 9 16 16 C 1.46920 * 118.73826 * 53.60646 * 5 4 2 17 17 C 1.53194 * 108.77724 * 306.39136 * 16 5 4 18 18 C 1.53035 * 109.49698 * 120.08034 * 2 1 3 19 19 H 1.09001 * 109.45031 * 61.30292 * 18 2 1 20 20 C 1.53001 * 109.45981 * 301.33603 * 18 2 1 21 21 N 1.46500 * 109.46972 * 174.93327 * 20 18 2 22 22 C 1.36936 * 119.99793 * 180.02562 * 21 20 18 23 23 H 1.08000 * 120.00109 * 359.97438 * 22 21 20 24 24 C 1.38812 * 120.00185 * 179.97438 * 22 21 20 25 25 N 1.31616 * 120.00370 * 179.97438 * 24 22 21 26 26 Si 1.86807 * 119.99630 * 0.02562 * 24 22 21 27 27 H 1.48492 * 109.47110 * 269.99706 * 26 24 22 28 28 H 1.48492 * 109.47223 * 30.00007 * 26 24 22 29 29 H 1.48504 * 109.46902 * 149.99767 * 26 24 22 30 30 H 1.08998 * 109.47206 * 299.91914 * 1 2 3 31 31 H 1.09003 * 109.47279 * 59.92334 * 1 2 3 32 32 H 1.08998 * 109.47268 * 179.91600 * 1 2 3 33 33 H 1.08999 * 109.58981 * 65.62321 * 4 2 1 34 34 H 1.09009 * 109.58858 * 305.20027 * 4 2 1 35 35 H 1.07998 * 126.27709 * 0.02562 * 9 8 6 36 36 H 1.08988 * 115.55406 * 154.38826 * 12 11 10 37 37 H 1.09004 * 117.49563 * 0.02562 * 13 12 11 38 38 H 1.08994 * 117.49884 * 145.02545 * 13 12 11 39 39 H 1.09000 * 117.49436 * 214.98000 * 14 12 11 40 40 H 1.09005 * 117.49528 * 359.97438 * 14 12 11 41 41 H 1.09001 * 109.59013 * 186.61033 * 16 5 4 42 42 H 1.09002 * 109.70766 * 66.24953 * 16 5 4 43 43 H 1.08995 * 109.49862 * 294.68829 * 17 16 5 44 44 H 1.09005 * 109.52469 * 174.59813 * 17 16 5 45 45 H 1.08999 * 109.47310 * 54.93629 * 20 18 2 46 46 H 1.08999 * 109.47046 * 294.93400 * 20 18 2 47 47 H 0.97003 * 120.00536 * 359.97438 * 21 20 18 48 48 H 0.97001 * 120.00081 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0413 -0.7238 -1.2496 5 7 3.5046 -0.8292 -1.1696 6 6 4.2811 -0.3857 -2.1780 7 8 3.7705 0.0455 -3.1948 8 6 5.7423 -0.4228 -2.0496 9 6 6.4891 -1.4466 -1.5467 10 7 7.7722 -1.0764 -1.6118 11 6 7.8430 0.1242 -2.1214 12 6 9.1135 0.8999 -2.3564 13 6 10.4388 0.1606 -2.1615 14 6 9.9885 1.2076 -1.1395 15 8 6.6092 0.5550 -2.4020 16 6 4.1052 -1.4267 0.0307 17 6 3.5709 -0.6950 1.2659 18 6 2.0408 -0.7230 1.2483 19 1 1.6967 -1.7572 1.2350 20 6 1.5037 -0.0231 2.4983 21 7 1.8917 -0.7839 3.6887 22 6 1.5200 -0.3466 4.9320 23 1 0.9411 0.5593 5.0350 24 6 1.8872 -1.0676 6.0598 25 7 1.5303 -0.6471 7.2549 26 14 2.8890 -2.6342 5.8816 27 1 1.9729 -3.7946 5.7427 28 1 3.7504 -2.5365 4.6760 29 1 3.7403 -2.8169 7.0846 30 1 -0.3633 0.5126 0.8907 31 1 -0.3634 0.5150 -0.8893 32 1 -0.3634 -1.0276 -0.0015 33 1 1.7637 -0.1580 -2.1389 34 1 1.6052 -1.7217 -1.2980 35 1 6.1134 -2.3854 -1.1675 36 1 9.0671 1.6502 -3.1455 37 1 10.3917 -0.8869 -1.8637 38 1 11.2644 0.4249 -2.8222 39 1 10.5181 2.1603 -1.1284 40 1 9.6450 0.8493 -0.1691 41 1 5.1895 -1.3246 -0.0138 42 1 3.8397 -2.4823 0.0880 43 1 3.9159 0.3388 1.2540 44 1 3.9334 -1.1892 2.1673 45 1 0.4167 0.0356 2.4431 46 1 1.9194 0.9827 2.5585 47 1 2.4113 -1.5978 3.5962 48 1 1.7873 -1.1508 8.0430 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001184596231.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:33:50 Heat of formation + Delta-G solvation = 35.744586 kcal Electronic energy + Delta-G solvation = -28937.347132 eV Core-core repulsion = 24995.587973 eV Total energy + Delta-G solvation = -3941.759159 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -43.81351 -40.45325 -38.24746 -37.71442 -35.55210 -34.97835 -33.81716 -32.18086 -30.88025 -30.70963 -27.38617 -27.07278 -25.03030 -24.20219 -23.23022 -22.85404 -22.50153 -21.39431 -21.02773 -20.54074 -19.67868 -17.92015 -17.74964 -17.47922 -16.99985 -16.47646 -15.49515 -15.40287 -15.04737 -14.91489 -14.66187 -14.51585 -14.23215 -13.86633 -13.45858 -13.37388 -13.07815 -12.96665 -12.78599 -12.49571 -12.11578 -12.08341 -12.01504 -11.91581 -11.78814 -11.39426 -11.32103 -11.26215 -11.07525 -11.04249 -10.93384 -10.58737 -10.52172 -10.28857 -10.22633 -10.09548 -9.61103 -9.14852 -8.94376 -8.84636 -7.24950 -5.79404 -3.14843 0.58152 1.59158 2.00562 2.62105 2.87446 3.29614 3.32164 3.35191 3.41979 3.55332 4.05946 4.23951 4.38956 4.46221 4.51146 4.55583 4.59438 4.69344 4.77422 4.87404 5.05497 5.10052 5.16719 5.20902 5.26703 5.31970 5.36736 5.49740 5.51835 5.53086 5.59383 5.64130 5.66050 5.68875 5.71420 5.78138 5.83005 6.02845 6.09791 6.12570 6.24781 6.31707 6.34888 6.68565 6.75957 6.94797 7.19764 7.67974 7.97060 8.39632 9.18709 9.90889 10.10663 11.39198 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.011008 B = 0.003131 C = 0.002600 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2543.068968 B = 8940.088001 C =10764.903504 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.097 4.097 3 H 0.076 0.924 4 C 0.121 3.879 5 N -0.588 5.588 6 C 0.604 3.396 7 O -0.522 6.522 8 C -0.090 4.090 9 C 0.018 3.982 10 N -0.482 5.482 11 C 0.243 3.757 12 C -0.089 4.089 13 C -0.143 4.143 14 C -0.152 4.152 15 O -0.168 6.168 16 C 0.087 3.913 17 C -0.127 4.127 18 C -0.094 4.094 19 H 0.074 0.926 20 C 0.161 3.839 21 N -0.755 5.755 22 C -0.243 4.243 23 H 0.089 0.911 24 C 0.003 3.997 25 N -0.935 5.935 26 Si 0.885 3.115 27 H -0.284 1.284 28 H -0.278 1.278 29 H -0.291 1.291 30 H 0.071 0.929 31 H 0.054 0.946 32 H 0.057 0.943 33 H 0.095 0.905 34 H 0.075 0.925 35 H 0.197 0.803 36 H 0.137 0.863 37 H 0.112 0.888 38 H 0.109 0.891 39 H 0.111 0.889 40 H 0.105 0.895 41 H 0.091 0.909 42 H 0.079 0.921 43 H 0.068 0.932 44 H 0.086 0.914 45 H 0.034 0.966 46 H 0.025 0.975 47 H 0.360 0.640 48 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.945 -0.027 -21.916 25.454 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.117 4.117 3 H 0.095 0.905 4 C 0.000 4.000 5 N -0.321 5.321 6 C 0.389 3.611 7 O -0.399 6.399 8 C -0.146 4.146 9 C -0.125 4.125 10 N -0.210 5.210 11 C 0.038 3.962 12 C -0.108 4.108 13 C -0.181 4.181 14 C -0.189 4.189 15 O -0.052 6.052 16 C -0.035 4.035 17 C -0.166 4.166 18 C -0.113 4.113 19 H 0.092 0.908 20 C 0.034 3.966 21 N -0.401 5.401 22 C -0.373 4.373 23 H 0.107 0.893 24 C -0.192 4.192 25 N -0.583 5.583 26 Si 0.715 3.285 27 H -0.211 1.211 28 H -0.204 1.204 29 H -0.217 1.217 30 H 0.090 0.910 31 H 0.073 0.927 32 H 0.076 0.924 33 H 0.113 0.887 34 H 0.093 0.907 35 H 0.214 0.786 36 H 0.154 0.846 37 H 0.131 0.869 38 H 0.127 0.873 39 H 0.129 0.871 40 H 0.123 0.877 41 H 0.109 0.891 42 H 0.098 0.902 43 H 0.087 0.913 44 H 0.104 0.896 45 H 0.052 0.948 46 H 0.043 0.957 47 H 0.192 0.808 48 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 13.072 0.067 -22.122 25.695 hybrid contribution 0.058 -0.838 -0.051 0.842 sum 13.129 -0.771 -22.173 25.780 Atomic orbital electron populations 1.21838 0.93840 1.02391 1.02454 1.21469 0.96495 1.00075 0.93654 0.90531 1.21859 0.76841 1.01593 0.99729 1.47819 1.07242 1.59911 1.17128 1.16305 0.82490 0.78588 0.83687 1.90861 1.74074 1.46415 1.28552 1.22703 0.92397 0.90730 1.08792 1.23719 0.87936 1.00607 1.00189 1.70284 1.20745 1.11011 1.18973 1.25417 0.84819 0.90327 0.95647 1.20180 0.83780 1.02625 1.04185 1.23140 0.93721 0.99417 1.01783 1.23190 1.00566 1.01217 0.93963 1.84466 1.16447 1.40592 1.63721 1.22339 0.99146 0.97815 0.84237 1.21960 0.96251 1.01511 0.96837 1.21421 0.94508 1.00393 0.94986 0.90767 1.20734 0.97298 0.94100 0.84489 1.42723 1.66162 1.28594 1.02626 1.19056 1.28403 1.07920 0.81919 0.89290 1.24680 1.00715 0.98719 0.95119 1.69699 1.50942 1.40564 0.97065 0.86551 0.80405 0.84700 0.76834 1.21095 1.20405 1.21739 0.90981 0.92741 0.92353 0.88709 0.90684 0.78608 0.84551 0.86914 0.87258 0.87110 0.87691 0.89111 0.90247 0.91287 0.89563 0.94819 0.95713 0.80757 0.93053 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.58 8.82 37.16 0.33 -1.25 16 2 C -0.10 -1.13 2.41 -90.50 -0.22 -1.35 16 3 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 4 C 0.12 1.33 5.71 -3.71 -0.02 1.30 16 5 N -0.59 -6.86 2.97 -174.29 -0.52 -7.38 16 6 C 0.60 8.26 7.62 -12.83 -0.10 8.16 16 7 O -0.52 -8.70 16.53 5.20 0.09 -8.62 16 8 C -0.09 -1.15 6.53 -36.84 -0.24 -1.39 16 9 C 0.02 0.20 9.44 -17.42 -0.16 0.03 16 10 N -0.48 -5.61 10.79 -10.81 -0.12 -5.73 16 11 C 0.24 2.71 7.86 -12.80 -0.10 2.61 16 12 C -0.09 -0.66 6.33 -91.77 -0.58 -1.24 16 13 C -0.14 -0.83 10.13 -26.69 -0.27 -1.10 16 14 C -0.15 -0.92 10.24 -26.69 -0.27 -1.19 16 15 O -0.17 -2.22 10.79 4.43 0.05 -2.17 16 16 C 0.09 0.91 5.69 -3.71 -0.02 0.89 16 17 C -0.13 -1.67 5.25 -26.61 -0.14 -1.81 16 18 C -0.09 -1.29 1.73 -90.58 -0.16 -1.45 16 19 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 20 C 0.16 2.91 5.41 -4.04 -0.02 2.89 16 21 N -0.76 -17.16 5.12 -59.91 -0.31 -17.47 16 22 C -0.24 -6.76 10.47 -15.06 -0.16 -6.92 16 23 H 0.09 2.67 8.06 -52.49 -0.42 2.25 16 24 C 0.00 0.10 5.50 -17.43 -0.10 0.00 16 25 N -0.93 -29.15 13.97 55.49 0.78 -28.37 16 26 Si 0.88 21.57 27.73 -169.99 -4.71 16.86 16 27 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 28 H -0.28 -6.22 6.52 56.52 0.37 -5.85 16 29 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 30 H 0.07 0.86 6.29 -51.93 -0.33 0.53 16 31 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.09 1.10 7.02 -51.93 -0.36 0.73 16 34 H 0.07 0.72 8.14 -51.92 -0.42 0.30 16 35 H 0.20 1.60 7.05 -52.49 -0.37 1.23 16 36 H 0.14 0.77 8.14 -51.94 -0.42 0.35 16 37 H 0.11 0.79 7.87 -51.93 -0.41 0.38 16 38 H 0.11 0.40 8.14 -51.93 -0.42 -0.03 16 39 H 0.11 0.45 8.14 -51.93 -0.42 0.03 16 40 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 41 H 0.09 0.90 4.18 -51.93 -0.22 0.68 16 42 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 43 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 44 H 0.09 1.26 7.15 -51.93 -0.37 0.89 16 45 H 0.03 0.62 6.14 -51.93 -0.32 0.30 16 46 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 47 H 0.36 7.87 4.71 -40.82 -0.19 7.68 16 48 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 LS Contribution 382.30 15.07 5.76 5.76 Total: -1.00 -34.38 382.30 -8.45 -42.84 By element: Atomic # 1 Polarization: 13.32 SS G_CDS: -7.23 Total: 6.09 kcal Atomic # 6 Polarization: 0.42 SS G_CDS: -2.23 Total: -1.82 kcal Atomic # 7 Polarization: -58.78 SS G_CDS: -0.17 Total: -58.94 kcal Atomic # 8 Polarization: -10.92 SS G_CDS: 0.13 Total: -10.79 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -4.71 Total: 16.86 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -34.38 -8.45 -42.84 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001184596231.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.582 kcal (2) G-P(sol) polarization free energy of solvation -34.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.198 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.453 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.837 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.745 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds