Wall clock time and date at job start Tue Mar 31 2020 17:33:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08996 * 109.52473 * 2 1 4 4 C 1.53192 * 109.49641 * 239.91825 * 2 1 3 5 5 N 1.46923 * 108.77694 * 185.41467 * 4 2 1 6 6 C 1.34781 * 120.63245 * 233.63179 * 5 4 2 7 7 O 1.21686 * 119.99818 * 356.28805 * 6 5 4 8 8 C 1.46723 * 120.00082 * 176.28658 * 6 5 4 9 9 C 1.36339 * 126.64017 * 43.29085 * 8 6 5 10 10 N 1.33695 * 107.44825 * 179.89566 * 9 8 6 11 11 C 1.30615 * 108.99758 * 0.37835 * 10 9 8 12 12 C 1.50700 * 125.42673 * 179.79144 * 11 10 9 13 13 C 1.53003 * 117.49747 * 8.71241 * 12 11 10 14 14 C 1.53008 * 117.49386 * 300.05647 * 12 11 10 15 15 O 1.33662 * 109.15353 * 359.75951 * 11 10 9 16 16 C 1.46920 * 118.73826 * 53.60646 * 5 4 2 17 17 C 1.53194 * 108.77724 * 306.39136 * 16 5 4 18 18 C 1.53035 * 109.49698 * 120.08034 * 2 1 3 19 19 H 1.09001 * 109.45031 * 61.30292 * 18 2 1 20 20 C 1.53001 * 109.45981 * 301.33603 * 18 2 1 21 21 N 1.46500 * 109.46972 * 174.93327 * 20 18 2 22 22 C 1.36936 * 119.99793 * 180.02562 * 21 20 18 23 23 H 1.08000 * 120.00109 * 359.97438 * 22 21 20 24 24 C 1.38812 * 120.00185 * 179.97438 * 22 21 20 25 25 N 1.31616 * 120.00370 * 179.97438 * 24 22 21 26 26 Si 1.86807 * 119.99630 * 0.02562 * 24 22 21 27 27 H 1.48492 * 109.47110 * 269.99706 * 26 24 22 28 28 H 1.48492 * 109.47223 * 30.00007 * 26 24 22 29 29 H 1.48504 * 109.46902 * 149.99767 * 26 24 22 30 30 H 1.08998 * 109.47206 * 299.91914 * 1 2 3 31 31 H 1.09003 * 109.47279 * 59.92334 * 1 2 3 32 32 H 1.08998 * 109.47268 * 179.91600 * 1 2 3 33 33 H 1.08999 * 109.58981 * 65.62321 * 4 2 1 34 34 H 1.09009 * 109.58858 * 305.20027 * 4 2 1 35 35 H 1.07998 * 126.27709 * 0.02562 * 9 8 6 36 36 H 1.08988 * 115.55406 * 154.38826 * 12 11 10 37 37 H 1.09004 * 117.49563 * 0.02562 * 13 12 11 38 38 H 1.08994 * 117.49884 * 145.02545 * 13 12 11 39 39 H 1.09000 * 117.49436 * 214.98000 * 14 12 11 40 40 H 1.09005 * 117.49528 * 359.97438 * 14 12 11 41 41 H 1.09001 * 109.59013 * 186.61033 * 16 5 4 42 42 H 1.09002 * 109.70766 * 66.24953 * 16 5 4 43 43 H 1.08995 * 109.49862 * 294.68829 * 17 16 5 44 44 H 1.09005 * 109.52469 * 174.59813 * 17 16 5 45 45 H 1.08999 * 109.47310 * 54.93629 * 20 18 2 46 46 H 1.08999 * 109.47046 * 294.93400 * 20 18 2 47 47 H 0.97003 * 120.00536 * 359.97438 * 21 20 18 48 48 H 0.97001 * 120.00081 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0413 -0.7238 -1.2496 5 7 3.5046 -0.8292 -1.1696 6 6 4.2811 -0.3857 -2.1780 7 8 3.7705 0.0455 -3.1948 8 6 5.7423 -0.4228 -2.0496 9 6 6.4891 -1.4466 -1.5467 10 7 7.7722 -1.0764 -1.6118 11 6 7.8430 0.1242 -2.1214 12 6 9.1135 0.8999 -2.3564 13 6 10.4388 0.1606 -2.1615 14 6 9.9885 1.2076 -1.1395 15 8 6.6092 0.5550 -2.4020 16 6 4.1052 -1.4267 0.0307 17 6 3.5709 -0.6950 1.2659 18 6 2.0408 -0.7230 1.2483 19 1 1.6967 -1.7572 1.2350 20 6 1.5037 -0.0231 2.4983 21 7 1.8917 -0.7839 3.6887 22 6 1.5200 -0.3466 4.9320 23 1 0.9411 0.5593 5.0350 24 6 1.8872 -1.0676 6.0598 25 7 1.5303 -0.6471 7.2549 26 14 2.8890 -2.6342 5.8816 27 1 1.9729 -3.7946 5.7427 28 1 3.7504 -2.5365 4.6760 29 1 3.7403 -2.8169 7.0846 30 1 -0.3633 0.5126 0.8907 31 1 -0.3634 0.5150 -0.8893 32 1 -0.3634 -1.0276 -0.0015 33 1 1.7637 -0.1580 -2.1389 34 1 1.6052 -1.7217 -1.2980 35 1 6.1134 -2.3854 -1.1675 36 1 9.0671 1.6502 -3.1455 37 1 10.3917 -0.8869 -1.8637 38 1 11.2644 0.4249 -2.8222 39 1 10.5181 2.1603 -1.1284 40 1 9.6450 0.8493 -0.1691 41 1 5.1895 -1.3246 -0.0138 42 1 3.8397 -2.4823 0.0880 43 1 3.9159 0.3388 1.2540 44 1 3.9334 -1.1892 2.1673 45 1 0.4167 0.0356 2.4431 46 1 1.9194 0.9827 2.5585 47 1 2.4113 -1.5978 3.5962 48 1 1.7873 -1.1508 8.0430 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001184596231.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:33:49 Heat of formation + Delta-G solvation = 11.689443 kcal Electronic energy + Delta-G solvation = -28938.390241 eV Core-core repulsion = 24995.587973 eV Total energy + Delta-G solvation = -3942.802269 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -44.68066 -41.45459 -39.36209 -38.26671 -36.86161 -36.06769 -35.11298 -33.68189 -32.42293 -31.68468 -28.78543 -27.93469 -26.05080 -25.25527 -24.55238 -23.61565 -23.27489 -22.74861 -21.81842 -21.58546 -20.73948 -19.64472 -18.73025 -18.48907 -17.87100 -17.44707 -16.71107 -16.40526 -16.12023 -15.90794 -15.72713 -15.61057 -15.55194 -15.01696 -14.69298 -14.57298 -14.53322 -14.05387 -13.98319 -13.37773 -13.29952 -13.16946 -12.99273 -12.90550 -12.78264 -12.66801 -12.45885 -12.18944 -12.17307 -12.01164 -11.90540 -11.85195 -11.66056 -11.60527 -11.57069 -11.28563 -11.26618 -10.92271 -10.03945 -9.79298 -9.26676 -8.01576 -5.35167 -0.30240 0.71200 1.18072 1.38052 1.43722 1.50930 1.67587 2.02853 2.50159 2.70413 2.86769 3.23455 3.29823 3.50511 3.60293 3.64299 3.73799 3.75406 3.88787 3.93604 3.96566 4.02109 4.18686 4.29594 4.34031 4.43237 4.51249 4.57054 4.64011 4.67594 4.73599 4.76032 4.79041 4.85716 4.94076 4.94700 5.05061 5.06700 5.10289 5.15410 5.20821 5.22902 5.27929 5.42454 5.54117 5.76979 5.99015 6.22159 6.34437 6.69909 7.09778 7.85257 8.06091 9.20297 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.011008 B = 0.003131 C = 0.002600 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2543.068968 B = 8940.088001 C =10764.903504 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.089 4.089 3 H 0.062 0.938 4 C 0.123 3.877 5 N -0.581 5.581 6 C 0.604 3.396 7 O -0.562 6.562 8 C -0.120 4.120 9 C 0.034 3.966 10 N -0.499 5.499 11 C 0.245 3.755 12 C -0.109 4.109 13 C -0.131 4.131 14 C -0.145 4.145 15 O -0.189 6.189 16 C 0.093 3.907 17 C -0.126 4.126 18 C -0.084 4.084 19 H 0.088 0.912 20 C 0.158 3.842 21 N -0.754 5.754 22 C -0.235 4.235 23 H 0.050 0.950 24 C -0.068 4.068 25 N -0.987 5.987 26 Si 0.957 3.043 27 H -0.276 1.276 28 H -0.243 1.243 29 H -0.299 1.299 30 H 0.055 0.945 31 H 0.068 0.932 32 H 0.069 0.931 33 H 0.089 0.911 34 H 0.100 0.900 35 H 0.225 0.775 36 H 0.154 0.846 37 H 0.100 0.900 38 H 0.136 0.864 39 H 0.134 0.866 40 H 0.090 0.910 41 H 0.099 0.901 42 H 0.110 0.890 43 H 0.053 0.947 44 H 0.076 0.924 45 H 0.033 0.967 46 H 0.010 0.990 47 H 0.368 0.632 48 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.769 -2.046 -23.756 28.047 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.108 4.108 3 H 0.081 0.919 4 C 0.002 3.998 5 N -0.313 5.313 6 C 0.391 3.609 7 O -0.442 6.442 8 C -0.176 4.176 9 C -0.108 4.108 10 N -0.228 5.228 11 C 0.041 3.959 12 C -0.128 4.128 13 C -0.168 4.168 14 C -0.183 4.183 15 O -0.075 6.075 16 C -0.029 4.029 17 C -0.164 4.164 18 C -0.102 4.102 19 H 0.107 0.893 20 C 0.033 3.967 21 N -0.400 5.400 22 C -0.366 4.366 23 H 0.069 0.931 24 C -0.259 4.259 25 N -0.638 5.638 26 Si 0.784 3.216 27 H -0.202 1.202 28 H -0.167 1.167 29 H -0.226 1.226 30 H 0.074 0.926 31 H 0.087 0.913 32 H 0.088 0.912 33 H 0.107 0.893 34 H 0.118 0.882 35 H 0.242 0.758 36 H 0.171 0.829 37 H 0.118 0.882 38 H 0.154 0.846 39 H 0.152 0.848 40 H 0.108 0.892 41 H 0.117 0.883 42 H 0.128 0.872 43 H 0.072 0.928 44 H 0.095 0.905 45 H 0.051 0.949 46 H 0.028 0.972 47 H 0.202 0.798 48 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 14.894 -1.958 -23.999 28.313 hybrid contribution -0.523 -0.073 0.544 0.758 sum 14.371 -2.031 -23.454 27.582 Atomic orbital electron populations 1.21810 0.92952 1.03138 1.02376 1.21366 0.97164 0.99188 0.93117 0.91931 1.21904 0.76510 1.02696 0.98679 1.47871 1.07450 1.59109 1.16856 1.16453 0.82965 0.77997 0.83480 1.90832 1.74866 1.48357 1.30132 1.22658 0.92165 0.91675 1.11111 1.24176 0.87467 1.00800 0.98361 1.70349 1.21014 1.11443 1.19957 1.26270 0.85159 0.90418 0.94082 1.20555 0.82914 1.03612 1.05737 1.23234 0.93214 0.98634 1.01704 1.23272 0.99803 1.02437 0.92795 1.84453 1.17305 1.41356 1.64426 1.22409 0.99482 0.98767 0.82219 1.21899 0.95669 1.01002 0.97824 1.21324 0.94933 1.00667 0.93307 0.89330 1.20876 0.97345 0.93535 0.84993 1.42670 1.66085 1.29171 1.02083 1.19015 1.26966 1.06376 0.84228 0.93144 1.25580 1.02730 1.03019 0.94536 1.69902 1.53141 1.42633 0.98130 0.85382 0.78929 0.79576 0.77758 1.20229 1.16676 1.22584 0.92640 0.91270 0.91179 0.89284 0.88223 0.75822 0.82866 0.88184 0.84591 0.84770 0.89167 0.88337 0.87228 0.92805 0.90526 0.94878 0.97153 0.79823 0.93379 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.86 8.82 71.98 0.63 -2.23 16 2 C -0.09 -1.92 2.41 -10.72 -0.03 -1.95 16 3 H 0.06 1.54 8.14 -2.39 -0.02 1.53 16 4 C 0.12 2.41 5.71 86.36 0.49 2.90 16 5 N -0.58 -12.35 2.97 -823.56 -2.45 -14.80 16 6 C 0.60 16.00 7.62 86.46 0.66 16.66 16 7 O -0.56 -18.71 16.53 -4.30 -0.07 -18.78 16 8 C -0.12 -2.99 6.53 24.05 0.16 -2.83 16 9 C 0.03 0.69 9.44 83.97 0.79 1.48 16 10 N -0.50 -10.92 10.79 -302.89 -3.27 -14.19 16 11 C 0.24 5.25 7.86 88.29 0.69 5.94 16 12 C -0.11 -1.46 6.33 -11.54 -0.07 -1.53 16 13 C -0.13 -1.22 10.13 30.62 0.31 -0.91 16 14 C -0.15 -1.47 10.24 30.62 0.31 -1.16 16 15 O -0.19 -4.99 10.79 -7.06 -0.08 -5.07 16 16 C 0.09 1.67 5.69 86.36 0.49 2.16 16 17 C -0.13 -3.04 5.25 30.67 0.16 -2.88 16 18 C -0.08 -2.12 1.73 -10.77 -0.02 -2.14 16 19 H 0.09 2.07 8.14 -2.39 -0.02 2.05 16 20 C 0.16 5.67 5.41 86.38 0.47 6.14 16 21 N -0.75 -33.59 5.12 -343.45 -1.76 -35.35 16 22 C -0.23 -13.26 10.47 84.03 0.88 -12.38 16 23 H 0.05 3.17 8.06 -2.91 -0.02 3.15 16 24 C -0.07 -3.94 5.50 84.86 0.47 -3.47 16 25 N -0.99 -63.23 13.97 21.65 0.30 -62.93 16 26 Si 0.96 43.84 27.73 68.60 1.90 45.75 16 27 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16 28 H -0.24 -9.60 6.52 99.48 0.65 -8.95 16 29 H -0.30 -14.05 7.11 99.48 0.71 -13.34 16 30 H 0.05 1.28 6.29 -2.39 -0.02 1.27 16 31 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 32 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 33 H 0.09 1.93 7.02 -2.39 -0.02 1.91 16 34 H 0.10 1.53 8.14 -2.38 -0.02 1.51 16 35 H 0.23 2.90 7.05 -2.91 -0.02 2.88 16 36 H 0.15 1.46 8.14 -2.39 -0.02 1.44 16 37 H 0.10 1.23 7.87 -2.39 -0.02 1.21 16 38 H 0.14 0.54 8.14 -2.39 -0.02 0.53 16 39 H 0.13 0.72 8.14 -2.39 -0.02 0.70 16 40 H 0.09 1.20 8.14 -2.38 -0.02 1.18 16 41 H 0.10 1.67 4.18 -2.39 -0.01 1.66 16 42 H 0.11 1.41 8.14 -2.39 -0.02 1.39 16 43 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 44 H 0.08 2.03 7.15 -2.38 -0.02 2.02 16 45 H 0.03 1.21 6.14 -2.39 -0.01 1.20 16 46 H 0.01 0.40 8.14 -2.39 -0.02 0.39 16 47 H 0.37 15.15 4.71 -92.71 -0.44 14.71 16 48 H 0.26 15.68 8.31 -92.71 -0.77 14.90 16 Total: -1.00 -77.49 382.30 1.47 -76.02 By element: Atomic # 1 Polarization: 25.07 SS G_CDS: 0.49 Total: 25.55 kcal Atomic # 6 Polarization: -2.60 SS G_CDS: 6.40 Total: 3.80 kcal Atomic # 7 Polarization: -120.09 SS G_CDS: -7.17 Total: -127.27 kcal Atomic # 8 Polarization: -23.70 SS G_CDS: -0.15 Total: -23.85 kcal Atomic # 14 Polarization: 43.84 SS G_CDS: 1.90 Total: 45.75 kcal Total: -77.49 1.47 -76.02 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001184596231.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.706 kcal (2) G-P(sol) polarization free energy of solvation -77.489 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.217 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.472 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.017 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds