Wall clock time and date at job start Tue Mar 31 2020 17:33:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.50350 * 2 1 4 4 C 1.53192 * 109.49787 * 120.06961 * 2 1 3 5 5 N 1.46927 * 108.77586 * 65.31520 * 4 2 1 6 6 C 1.34778 * 120.62828 * 233.59083 * 5 4 2 7 7 O 1.21476 * 119.99915 * 353.02156 * 6 5 4 8 8 C 1.48453 * 119.99937 * 173.03232 * 6 5 4 9 9 C 1.41152 * 120.54026 * 96.43483 * 8 6 5 10 10 C 1.35265 * 119.86721 * 179.75772 * 9 8 6 11 11 N 1.35705 * 120.99960 * 0.52549 * 10 9 8 12 12 C 1.46496 * 119.43878 * 179.70536 * 11 10 9 13 13 C 1.34594 * 121.11978 * 359.73422 * 11 10 9 14 14 O 1.22011 * 119.96410 * 179.97438 * 13 11 10 15 15 C 1.38296 * 120.53708 * 276.71117 * 8 6 5 16 16 C 1.46925 * 118.73964 * 53.60930 * 5 4 2 17 17 C 1.53191 * 108.77500 * 306.39032 * 16 5 4 18 18 C 1.53042 * 109.33886 * 54.62216 * 17 16 5 19 19 H 1.09003 * 109.46184 * 58.66663 * 18 17 16 20 20 C 1.52998 * 109.46042 * 178.63265 * 18 17 16 21 21 N 1.46505 * 109.46732 * 294.99774 * 20 18 17 22 22 C 1.36939 * 120.00020 * 180.02562 * 21 20 18 23 23 H 1.08003 * 119.99498 * 0.02562 * 22 21 20 24 24 C 1.38809 * 120.00269 * 179.97438 * 22 21 20 25 25 N 1.31625 * 119.99668 * 0.02562 * 24 22 21 26 26 Si 1.86799 * 120.00075 * 179.97438 * 24 22 21 27 27 H 1.48493 * 109.46944 * 60.00549 * 26 24 22 28 28 H 1.48501 * 109.46841 * 180.02562 * 26 24 22 29 29 H 1.48499 * 109.47460 * 300.00441 * 26 24 22 30 30 H 1.08998 * 109.46865 * 299.93914 * 1 2 3 31 31 H 1.09003 * 109.46627 * 59.93030 * 1 2 3 32 32 H 1.08994 * 109.47336 * 179.97438 * 1 2 3 33 33 H 1.09002 * 109.58652 * 305.52292 * 4 2 1 34 34 H 1.09002 * 109.58496 * 185.10242 * 4 2 1 35 35 H 1.07996 * 120.06783 * 0.02675 * 9 8 6 36 36 H 1.07997 * 119.49855 * 180.23284 * 10 9 8 37 37 H 1.09003 * 109.47635 * 270.02306 * 12 11 10 38 38 H 1.09004 * 109.47433 * 30.02787 * 12 11 10 39 39 H 1.08997 * 109.47154 * 150.02250 * 12 11 10 40 40 H 1.08005 * 120.48661 * 0.02562 * 15 8 6 41 41 H 1.09002 * 109.58437 * 186.60841 * 16 5 4 42 42 H 1.08994 * 109.70141 * 66.25201 * 16 5 4 43 43 H 1.08996 * 109.49817 * 174.58969 * 17 16 5 44 44 H 1.09000 * 109.50071 * 294.65621 * 17 16 5 45 45 H 1.08993 * 109.47517 * 54.99439 * 20 18 17 46 46 H 1.09001 * 109.47083 * 175.00157 * 20 18 17 47 47 H 0.97001 * 120.00375 * 359.97438 * 21 20 18 48 48 H 0.96997 * 119.99662 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0275 0.0000 4 6 2.0413 -0.7236 1.2497 5 7 1.6515 -2.1379 1.1700 6 6 0.9746 -2.7215 2.1789 7 8 0.7916 -2.1176 3.2168 8 6 0.4530 -4.1025 2.0216 9 6 1.1849 -5.2057 2.5112 10 6 0.6945 -6.4578 2.3649 11 7 -0.4916 -6.6756 1.7425 12 6 -0.9875 -8.0464 1.5972 13 6 -1.2199 -5.6536 1.2560 14 8 -2.2832 -5.8736 0.6997 15 6 -0.7552 -4.3294 1.3881 16 6 2.0139 -2.9041 -0.0301 17 6 1.5029 -2.1561 -1.2655 18 6 2.0401 -0.7232 -1.2486 19 1 3.1299 -0.7440 -1.2358 20 6 1.5593 0.0162 -2.4988 21 7 2.1466 -0.6040 -3.6891 22 6 1.8581 -0.1082 -4.9325 23 1 1.1980 0.7404 -5.0357 24 6 2.4150 -0.6955 -6.0603 25 7 3.2199 -1.7293 -5.9344 26 14 2.0209 -0.0195 -7.7565 27 1 2.4565 1.3977 -7.8380 28 1 2.7351 -0.8173 -8.7854 29 1 0.5574 -0.1020 -7.9946 30 1 -0.3633 0.5129 0.8905 31 1 -0.3633 0.5149 -0.8894 32 1 -0.3634 -1.0276 -0.0005 33 1 1.6008 -0.2726 2.1390 34 1 3.1275 -0.6460 1.2981 35 1 2.1324 -5.0501 3.0054 36 1 1.2576 -7.2973 2.7451 37 1 -0.6225 -8.4675 0.6603 38 1 -0.6315 -8.6519 2.4307 39 1 -2.0774 -8.0399 1.5923 40 1 -1.3336 -3.5042 0.9996 41 1 1.5552 -3.8918 0.0146 42 1 3.0975 -3.0066 -0.0873 43 1 1.8479 -2.6634 -2.1665 44 1 0.4132 -2.1362 -1.2539 45 1 0.4725 -0.0399 -2.5587 46 1 1.8668 1.0605 -2.4441 47 1 2.7404 -1.3654 -3.5964 48 1 3.6093 -2.1394 -6.7225 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001184673950.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:33:01 Heat of formation + Delta-G solvation = -21.459084 kcal Electronic energy + Delta-G solvation = -29352.933177 eV Core-core repulsion = 25408.693481 eV Total energy + Delta-G solvation = -3944.239697 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.69516 -40.38972 -38.23200 -37.12638 -35.08858 -34.81033 -33.29495 -31.78278 -30.36807 -30.31546 -28.51569 -27.06744 -26.69351 -24.59630 -23.87310 -23.25994 -23.02681 -21.41725 -20.18699 -18.49631 -17.99132 -17.76734 -17.46160 -16.97222 -16.47762 -16.21846 -15.65256 -15.32522 -14.95195 -14.52760 -14.42716 -14.20846 -13.94847 -13.78100 -13.57616 -13.52421 -13.31635 -12.98375 -12.88019 -12.53165 -12.46763 -12.29556 -12.20679 -12.06812 -11.60296 -11.39768 -11.05458 -10.93673 -10.78149 -10.69562 -10.39154 -10.37403 -10.21585 -10.16415 -10.00440 -9.78735 -9.63529 -8.85058 -8.69533 -8.33328 -6.90245 -5.76351 -3.04128 0.31165 1.43830 2.23036 2.35306 2.77477 3.25418 3.44776 3.49172 3.50024 4.03768 4.16306 4.30502 4.59209 4.74356 4.77590 4.78613 4.86224 4.90294 4.96127 4.99773 5.12380 5.21557 5.22913 5.36008 5.45762 5.53265 5.60579 5.61736 5.68871 5.76608 5.80925 5.83322 5.87334 6.04240 6.05190 6.08148 6.17774 6.28475 6.36939 6.43472 6.47018 6.65216 6.67206 6.80960 6.94332 7.20553 7.68374 7.70554 7.88359 8.43260 9.54344 10.12552 10.47061 11.46617 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.012371 B = 0.003044 C = 0.002649 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2262.836434 B = 9194.952167 C =10567.365645 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.099 4.099 3 H 0.084 0.916 4 C 0.117 3.883 5 N -0.594 5.594 6 C 0.559 3.441 7 O -0.531 6.531 8 C -0.011 4.011 9 C -0.208 4.208 10 C 0.137 3.863 11 N -0.498 5.498 12 C 0.057 3.943 13 C 0.516 3.484 14 O -0.542 6.542 15 C -0.201 4.201 16 C 0.106 3.894 17 C -0.128 4.128 18 C -0.088 4.088 19 H 0.072 0.928 20 C 0.158 3.842 21 N -0.732 5.732 22 C -0.238 4.238 23 H 0.069 0.931 24 C -0.014 4.014 25 N -0.935 5.935 26 Si 0.906 3.094 27 H -0.286 1.286 28 H -0.291 1.291 29 H -0.286 1.286 30 H 0.048 0.952 31 H 0.063 0.937 32 H 0.054 0.946 33 H 0.091 0.909 34 H 0.071 0.929 35 H 0.150 0.850 36 H 0.168 0.832 37 H 0.079 0.921 38 H 0.086 0.914 39 H 0.095 0.905 40 H 0.154 0.846 41 H 0.080 0.920 42 H 0.075 0.925 43 H 0.089 0.911 44 H 0.069 0.931 45 H 0.022 0.978 46 H 0.017 0.983 47 H 0.383 0.617 48 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.919 -10.731 20.822 23.503 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.118 4.118 3 H 0.102 0.898 4 C -0.005 4.005 5 N -0.326 5.326 6 C 0.345 3.655 7 O -0.408 6.408 8 C -0.018 4.018 9 C -0.231 4.231 10 C 0.010 3.990 11 N -0.210 5.210 12 C -0.084 4.084 13 C 0.317 3.683 14 O -0.424 6.424 15 C -0.224 4.224 16 C -0.016 4.016 17 C -0.166 4.166 18 C -0.107 4.107 19 H 0.090 0.910 20 C 0.031 3.969 21 N -0.376 5.376 22 C -0.369 4.369 23 H 0.087 0.913 24 C -0.210 4.210 25 N -0.584 5.584 26 Si 0.737 3.263 27 H -0.213 1.213 28 H -0.217 1.217 29 H -0.213 1.213 30 H 0.067 0.933 31 H 0.082 0.918 32 H 0.073 0.927 33 H 0.109 0.891 34 H 0.089 0.911 35 H 0.168 0.832 36 H 0.186 0.814 37 H 0.097 0.903 38 H 0.105 0.895 39 H 0.113 0.887 40 H 0.172 0.828 41 H 0.098 0.902 42 H 0.093 0.907 43 H 0.107 0.893 44 H 0.088 0.912 45 H 0.040 0.960 46 H 0.035 0.965 47 H 0.217 0.783 48 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -2.788 -10.487 20.854 23.508 hybrid contribution 0.186 0.075 -1.056 1.074 sum -2.602 -10.412 19.798 22.520 Atomic orbital electron populations 1.21883 0.94884 1.01988 1.01652 1.21490 0.96694 0.99567 0.94088 0.89785 1.21762 0.99770 0.79561 0.99370 1.48090 1.54671 1.11854 1.17965 1.18402 0.77979 0.85542 0.83543 1.90797 1.58290 1.64419 1.27304 1.20389 0.94323 0.93960 0.93142 1.20498 1.03316 0.89909 1.09397 1.21841 0.85840 0.98901 0.92459 1.45401 1.18399 1.10166 1.46992 1.22207 1.03093 0.79696 1.03409 1.16997 0.85119 0.85287 0.80851 1.90982 1.22138 1.84753 1.44539 1.22514 0.97914 0.96637 1.05332 1.21906 1.00685 0.94863 0.84179 1.21978 1.01555 0.96024 0.97069 1.21309 1.00282 0.94593 0.94532 0.90958 1.20712 0.95960 0.94633 0.85624 1.42369 1.56736 1.37662 1.00848 1.19186 1.23005 1.10851 0.83870 0.91346 1.24712 1.00092 0.98388 0.97778 1.69641 1.35654 1.24430 1.28650 0.86278 0.77674 0.78037 0.84278 1.21327 1.21710 1.21298 0.93267 0.91756 0.92657 0.89060 0.91120 0.83240 0.81436 0.90256 0.89549 0.88664 0.82818 0.90193 0.90671 0.89300 0.91212 0.96037 0.96473 0.78324 0.93533 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.89 8.38 37.16 0.31 -1.58 16 2 C -0.10 -1.23 2.72 -90.50 -0.25 -1.48 16 3 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 4 C 0.12 1.36 5.81 -3.71 -0.02 1.33 16 5 N -0.59 -7.01 2.41 -173.65 -0.42 -7.42 16 6 C 0.56 7.14 7.16 -12.05 -0.09 7.06 16 7 O -0.53 -8.39 16.55 5.39 0.09 -8.30 16 8 C -0.01 -0.12 3.70 -104.56 -0.39 -0.51 16 9 C -0.21 -1.62 9.78 -39.54 -0.39 -2.00 16 10 C 0.14 0.81 10.25 -16.90 -0.17 0.63 16 11 N -0.50 -4.22 2.98 -127.14 -0.38 -4.60 16 12 C 0.06 0.32 10.34 59.84 0.62 0.93 16 13 C 0.52 6.49 7.42 -15.31 -0.11 6.37 16 14 O -0.54 -8.75 16.62 4.91 0.08 -8.67 16 15 C -0.20 -2.45 9.65 -38.53 -0.37 -2.82 16 16 C 0.11 1.21 6.36 -3.71 -0.02 1.19 16 17 C -0.13 -1.83 4.90 -26.61 -0.13 -1.96 16 18 C -0.09 -1.32 1.96 -90.57 -0.18 -1.49 16 19 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 20 C 0.16 3.06 5.18 -4.04 -0.02 3.04 16 21 N -0.73 -18.00 5.32 -59.91 -0.32 -18.32 16 22 C -0.24 -6.61 9.99 -15.06 -0.15 -6.76 16 23 H 0.07 1.86 7.83 -52.48 -0.41 1.45 16 24 C -0.01 -0.40 5.50 -17.43 -0.10 -0.49 16 25 N -0.93 -27.86 13.06 55.49 0.72 -27.14 16 26 Si 0.91 22.40 29.55 -169.99 -5.02 17.38 16 27 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 28 H -0.29 -7.24 7.11 56.52 0.40 -6.83 16 29 H -0.29 -7.00 7.11 56.52 0.40 -6.59 16 30 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 31 H 0.06 0.87 6.59 -51.93 -0.34 0.53 16 32 H 0.05 0.74 5.97 -51.93 -0.31 0.43 16 33 H 0.09 1.11 7.05 -51.93 -0.37 0.74 16 34 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.15 0.90 8.06 -52.49 -0.42 0.47 16 36 H 0.17 0.25 8.02 -52.49 -0.42 -0.17 16 37 H 0.08 0.39 8.14 -51.93 -0.42 -0.04 16 38 H 0.09 0.18 8.00 -51.93 -0.42 -0.24 16 39 H 0.09 0.67 7.37 -51.93 -0.38 0.29 16 40 H 0.15 1.94 8.06 -52.48 -0.42 1.52 16 41 H 0.08 0.85 6.20 -51.93 -0.32 0.53 16 42 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 43 H 0.09 1.48 7.15 -51.93 -0.37 1.11 16 44 H 0.07 1.04 6.34 -51.93 -0.33 0.71 16 45 H 0.02 0.43 6.74 -51.93 -0.35 0.08 16 46 H 0.02 0.35 8.14 -51.93 -0.42 -0.08 16 47 H 0.38 9.76 6.85 -40.82 -0.28 9.48 16 48 H 0.25 7.39 8.31 -40.82 -0.34 7.05 16 LS Contribution 382.45 15.07 5.76 5.76 Total: -1.00 -35.69 382.45 -8.18 -43.86 By element: Atomic # 1 Polarization: 13.22 SS G_CDS: -7.24 Total: 5.98 kcal Atomic # 6 Polarization: 2.92 SS G_CDS: -1.45 Total: 1.46 kcal Atomic # 7 Polarization: -57.09 SS G_CDS: -0.39 Total: -57.48 kcal Atomic # 8 Polarization: -17.14 SS G_CDS: 0.17 Total: -16.97 kcal Atomic # 14 Polarization: 22.40 SS G_CDS: -5.02 Total: 17.38 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -35.69 -8.18 -43.86 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001184673950.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.405 kcal (2) G-P(sol) polarization free energy of solvation -35.687 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.282 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.177 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.864 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.459 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds