Wall clock time and date at job start Tue Mar 31 2020 17:33:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.50350 * 2 1 4 4 C 1.53192 * 109.49787 * 120.06961 * 2 1 3 5 5 N 1.46927 * 108.77586 * 65.31520 * 4 2 1 6 6 C 1.34778 * 120.62828 * 233.59083 * 5 4 2 7 7 O 1.21476 * 119.99915 * 353.02156 * 6 5 4 8 8 C 1.48453 * 119.99937 * 173.03232 * 6 5 4 9 9 C 1.41152 * 120.54026 * 96.43483 * 8 6 5 10 10 C 1.35265 * 119.86721 * 179.75772 * 9 8 6 11 11 N 1.35705 * 120.99960 * 0.52549 * 10 9 8 12 12 C 1.46496 * 119.43878 * 179.70536 * 11 10 9 13 13 C 1.34594 * 121.11978 * 359.73422 * 11 10 9 14 14 O 1.22011 * 119.96410 * 179.97438 * 13 11 10 15 15 C 1.38296 * 120.53708 * 276.71117 * 8 6 5 16 16 C 1.46925 * 118.73964 * 53.60930 * 5 4 2 17 17 C 1.53191 * 108.77500 * 306.39032 * 16 5 4 18 18 C 1.53042 * 109.33886 * 54.62216 * 17 16 5 19 19 H 1.09003 * 109.46184 * 58.66663 * 18 17 16 20 20 C 1.52998 * 109.46042 * 178.63265 * 18 17 16 21 21 N 1.46505 * 109.46732 * 294.99774 * 20 18 17 22 22 C 1.36939 * 120.00020 * 180.02562 * 21 20 18 23 23 H 1.08003 * 119.99498 * 0.02562 * 22 21 20 24 24 C 1.38809 * 120.00269 * 179.97438 * 22 21 20 25 25 N 1.31625 * 119.99668 * 0.02562 * 24 22 21 26 26 Si 1.86799 * 120.00075 * 179.97438 * 24 22 21 27 27 H 1.48493 * 109.46944 * 60.00549 * 26 24 22 28 28 H 1.48501 * 109.46841 * 180.02562 * 26 24 22 29 29 H 1.48499 * 109.47460 * 300.00441 * 26 24 22 30 30 H 1.08998 * 109.46865 * 299.93914 * 1 2 3 31 31 H 1.09003 * 109.46627 * 59.93030 * 1 2 3 32 32 H 1.08994 * 109.47336 * 179.97438 * 1 2 3 33 33 H 1.09002 * 109.58652 * 305.52292 * 4 2 1 34 34 H 1.09002 * 109.58496 * 185.10242 * 4 2 1 35 35 H 1.07996 * 120.06783 * 0.02675 * 9 8 6 36 36 H 1.07997 * 119.49855 * 180.23284 * 10 9 8 37 37 H 1.09003 * 109.47635 * 270.02306 * 12 11 10 38 38 H 1.09004 * 109.47433 * 30.02787 * 12 11 10 39 39 H 1.08997 * 109.47154 * 150.02250 * 12 11 10 40 40 H 1.08005 * 120.48661 * 0.02562 * 15 8 6 41 41 H 1.09002 * 109.58437 * 186.60841 * 16 5 4 42 42 H 1.08994 * 109.70141 * 66.25201 * 16 5 4 43 43 H 1.08996 * 109.49817 * 174.58969 * 17 16 5 44 44 H 1.09000 * 109.50071 * 294.65621 * 17 16 5 45 45 H 1.08993 * 109.47517 * 54.99439 * 20 18 17 46 46 H 1.09001 * 109.47083 * 175.00157 * 20 18 17 47 47 H 0.97001 * 120.00375 * 359.97438 * 21 20 18 48 48 H 0.96997 * 119.99662 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0275 0.0000 4 6 2.0413 -0.7236 1.2497 5 7 1.6515 -2.1379 1.1700 6 6 0.9746 -2.7215 2.1789 7 8 0.7916 -2.1176 3.2168 8 6 0.4530 -4.1025 2.0216 9 6 1.1849 -5.2057 2.5112 10 6 0.6945 -6.4578 2.3649 11 7 -0.4916 -6.6756 1.7425 12 6 -0.9875 -8.0464 1.5972 13 6 -1.2199 -5.6536 1.2560 14 8 -2.2832 -5.8736 0.6997 15 6 -0.7552 -4.3294 1.3881 16 6 2.0139 -2.9041 -0.0301 17 6 1.5029 -2.1561 -1.2655 18 6 2.0401 -0.7232 -1.2486 19 1 3.1299 -0.7440 -1.2358 20 6 1.5593 0.0162 -2.4988 21 7 2.1466 -0.6040 -3.6891 22 6 1.8581 -0.1082 -4.9325 23 1 1.1980 0.7404 -5.0357 24 6 2.4150 -0.6955 -6.0603 25 7 3.2199 -1.7293 -5.9344 26 14 2.0209 -0.0195 -7.7565 27 1 2.4565 1.3977 -7.8380 28 1 2.7351 -0.8173 -8.7854 29 1 0.5574 -0.1020 -7.9946 30 1 -0.3633 0.5129 0.8905 31 1 -0.3633 0.5149 -0.8894 32 1 -0.3634 -1.0276 -0.0005 33 1 1.6008 -0.2726 2.1390 34 1 3.1275 -0.6460 1.2981 35 1 2.1324 -5.0501 3.0054 36 1 1.2576 -7.2973 2.7451 37 1 -0.6225 -8.4675 0.6603 38 1 -0.6315 -8.6519 2.4307 39 1 -2.0774 -8.0399 1.5923 40 1 -1.3336 -3.5042 0.9996 41 1 1.5552 -3.8918 0.0146 42 1 3.0975 -3.0066 -0.0873 43 1 1.8479 -2.6634 -2.1665 44 1 0.4132 -2.1362 -1.2539 45 1 0.4725 -0.0399 -2.5587 46 1 1.8668 1.0605 -2.4441 47 1 2.7404 -1.3654 -3.5964 48 1 3.6093 -2.1394 -6.7225 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001184673950.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:33:00 Heat of formation + Delta-G solvation = -44.809049 kcal Electronic energy + Delta-G solvation = -29353.945708 eV Core-core repulsion = 25408.693481 eV Total energy + Delta-G solvation = -3945.252227 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.50194 -41.41258 -39.39603 -38.02488 -36.58857 -35.73702 -34.69671 -33.19524 -31.99186 -31.06919 -29.27210 -28.50377 -27.70015 -25.74902 -25.08111 -24.39199 -24.12622 -22.81980 -21.22482 -19.72150 -19.12672 -18.70858 -18.52609 -18.14292 -17.43703 -17.03329 -16.79252 -16.53767 -16.25846 -15.85173 -15.48907 -15.36273 -15.19634 -15.14474 -14.84158 -14.40773 -14.25118 -14.07615 -13.96991 -13.70757 -13.60413 -13.40107 -12.97998 -12.95261 -12.86213 -12.76226 -12.70595 -12.43459 -12.23684 -12.06414 -11.91052 -11.74766 -11.58429 -11.35878 -11.24770 -11.10337 -10.89735 -10.77630 -9.73765 -9.09579 -8.95796 -7.94117 -5.21371 -0.45826 0.69932 1.28724 1.47198 1.49577 1.55561 1.63765 1.82089 2.45189 2.56664 3.13048 3.39251 3.66179 3.70810 3.71078 3.74403 3.82536 4.02252 4.08147 4.15448 4.21538 4.30497 4.37796 4.41207 4.44922 4.46591 4.61333 4.64563 4.71962 4.75267 4.80646 4.82356 4.84327 4.92074 4.97022 5.06764 5.11986 5.16307 5.17594 5.22876 5.29470 5.44539 5.47127 5.51978 5.59583 5.94323 6.20039 6.29118 6.84086 6.87546 7.35834 8.12619 8.36739 9.28993 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.012371 B = 0.003044 C = 0.002649 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2262.836434 B = 9194.952167 C =10567.365645 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.090 4.090 3 H 0.098 0.902 4 C 0.119 3.881 5 N -0.590 5.590 6 C 0.560 3.440 7 O -0.563 6.563 8 C 0.000 4.000 9 C -0.223 4.223 10 C 0.168 3.832 11 N -0.492 5.492 12 C 0.050 3.950 13 C 0.504 3.496 14 O -0.598 6.598 15 C -0.240 4.240 16 C 0.116 3.884 17 C -0.123 4.123 18 C -0.077 4.077 19 H 0.075 0.925 20 C 0.158 3.842 21 N -0.741 5.741 22 C -0.247 4.247 23 H 0.070 0.930 24 C -0.072 4.072 25 N -0.966 5.966 26 Si 0.969 3.031 27 H -0.279 1.279 28 H -0.293 1.293 29 H -0.282 1.282 30 H 0.059 0.941 31 H 0.053 0.947 32 H 0.043 0.957 33 H 0.089 0.911 34 H 0.091 0.909 35 H 0.177 0.823 36 H 0.230 0.770 37 H 0.088 0.912 38 H 0.134 0.866 39 H 0.073 0.927 40 H 0.131 0.869 41 H 0.089 0.911 42 H 0.095 0.905 43 H 0.063 0.937 44 H 0.056 0.944 45 H 0.015 0.985 46 H 0.017 0.983 47 H 0.376 0.624 48 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.152 -12.046 22.566 25.580 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.110 4.110 3 H 0.116 0.884 4 C -0.002 4.002 5 N -0.321 5.321 6 C 0.348 3.652 7 O -0.443 6.443 8 C -0.007 4.007 9 C -0.245 4.245 10 C 0.040 3.960 11 N -0.200 5.200 12 C -0.090 4.090 13 C 0.308 3.692 14 O -0.485 6.485 15 C -0.263 4.263 16 C -0.006 4.006 17 C -0.161 4.161 18 C -0.096 4.096 19 H 0.093 0.907 20 C 0.032 3.968 21 N -0.385 5.385 22 C -0.379 4.379 23 H 0.088 0.912 24 C -0.264 4.264 25 N -0.616 5.616 26 Si 0.798 3.202 27 H -0.205 1.205 28 H -0.219 1.219 29 H -0.208 1.208 30 H 0.078 0.922 31 H 0.072 0.928 32 H 0.062 0.938 33 H 0.108 0.892 34 H 0.109 0.891 35 H 0.194 0.806 36 H 0.246 0.754 37 H 0.106 0.894 38 H 0.152 0.848 39 H 0.092 0.908 40 H 0.149 0.851 41 H 0.107 0.893 42 H 0.113 0.887 43 H 0.082 0.918 44 H 0.075 0.925 45 H 0.033 0.967 46 H 0.035 0.965 47 H 0.209 0.791 48 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -1.013 -11.793 22.624 25.534 hybrid contribution -0.338 0.462 -1.521 1.625 sum -1.351 -11.331 21.103 23.991 Atomic orbital electron populations 1.21842 0.95402 1.01262 1.01607 1.21436 0.96120 1.00170 0.93266 0.88422 1.21792 1.00925 0.79154 0.98372 1.48106 1.54241 1.12046 1.17678 1.18658 0.77341 0.86104 0.83113 1.90780 1.59520 1.65355 1.28600 1.20438 0.93819 0.94076 0.92404 1.20874 1.04255 0.89496 1.09870 1.22776 0.84061 1.00163 0.88996 1.45554 1.18628 1.10557 1.45280 1.22510 1.02120 0.78329 1.06012 1.17042 0.84967 0.86191 0.81001 1.90937 1.24492 1.85527 1.47534 1.22235 0.99162 0.96391 1.08507 1.21836 1.01675 0.94604 0.82455 1.21846 1.00714 0.95912 0.97618 1.21185 1.00300 0.94592 0.93495 0.90656 1.20843 0.95270 0.94832 0.85886 1.42541 1.56771 1.37626 1.01529 1.19561 1.22347 1.10592 0.85352 0.91222 1.25479 1.00597 0.99063 1.01270 1.69784 1.36919 1.25728 1.29201 0.85282 0.77441 0.77557 0.79909 1.20472 1.21939 1.20805 0.92231 0.92825 0.93775 0.89237 0.89064 0.80611 0.75370 0.89351 0.84763 0.90816 0.85088 0.89297 0.88718 0.91797 0.92535 0.96723 0.96472 0.79115 0.93991 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.73 8.38 71.98 0.60 -3.12 16 2 C -0.09 -2.16 2.72 -10.71 -0.03 -2.19 16 3 H 0.10 2.13 8.14 -2.39 -0.02 2.11 16 4 C 0.12 2.55 5.81 86.36 0.50 3.05 16 5 N -0.59 -13.21 2.41 -821.63 -1.98 -15.19 16 6 C 0.56 13.87 7.16 86.97 0.62 14.49 16 7 O -0.56 -17.45 16.55 -3.64 -0.06 -17.51 16 8 C 0.00 0.00 3.70 -19.82 -0.07 -0.07 16 9 C -0.22 -2.71 9.78 22.30 0.22 -2.49 16 10 C 0.17 1.22 10.25 83.41 0.86 2.08 16 11 N -0.49 -7.25 2.98 -674.33 -2.01 -9.26 16 12 C 0.05 0.42 10.34 127.77 1.32 1.74 16 13 C 0.50 13.08 7.42 84.94 0.63 13.71 16 14 O -0.60 -20.73 16.62 -5.35 -0.09 -20.82 16 15 C -0.24 -6.17 9.65 22.95 0.22 -5.94 16 16 C 0.12 2.53 6.36 86.36 0.55 3.08 16 17 C -0.12 -3.56 4.90 30.67 0.15 -3.41 16 18 C -0.08 -2.27 1.96 -10.76 -0.02 -2.29 16 19 H 0.08 2.22 8.14 -2.39 -0.02 2.20 16 20 C 0.16 6.19 5.18 86.38 0.45 6.63 16 21 N -0.74 -37.10 5.32 -343.45 -1.83 -38.92 16 22 C -0.25 -13.84 9.99 84.03 0.84 -13.00 16 23 H 0.07 3.81 7.83 -2.91 -0.02 3.78 16 24 C -0.07 -4.11 5.50 84.86 0.47 -3.64 16 25 N -0.97 -58.29 13.06 21.65 0.28 -58.01 16 26 Si 0.97 46.32 29.55 68.60 2.03 48.34 16 27 H -0.28 -12.84 7.11 99.48 0.71 -12.14 16 28 H -0.29 -14.02 7.11 99.48 0.71 -13.31 16 29 H -0.28 -13.13 7.11 99.48 0.71 -12.43 16 30 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 31 H 0.05 1.48 6.59 -2.39 -0.02 1.47 16 32 H 0.04 1.23 5.97 -2.39 -0.01 1.22 16 33 H 0.09 2.03 7.05 -2.39 -0.02 2.02 16 34 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 35 H 0.18 1.27 8.06 -2.91 -0.02 1.24 16 36 H 0.23 -1.06 8.02 -2.91 -0.02 -1.09 16 37 H 0.09 0.63 8.14 -2.39 -0.02 0.61 16 38 H 0.13 -0.15 8.00 -2.38 -0.02 -0.17 16 39 H 0.07 1.00 7.37 -2.39 -0.02 0.98 16 40 H 0.13 3.78 8.06 -2.91 -0.02 3.76 16 41 H 0.09 1.81 6.20 -2.39 -0.01 1.79 16 42 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 43 H 0.06 2.19 7.15 -2.39 -0.02 2.18 16 44 H 0.06 1.78 6.34 -2.39 -0.02 1.76 16 45 H 0.01 0.61 6.74 -2.39 -0.02 0.59 16 46 H 0.02 0.68 8.14 -2.39 -0.02 0.66 16 47 H 0.38 19.61 6.85 -92.71 -0.63 18.97 16 48 H 0.25 14.74 8.31 -92.71 -0.77 13.97 16 Total: -1.00 -81.79 382.45 3.99 -77.80 By element: Atomic # 1 Polarization: 24.60 SS G_CDS: 0.34 Total: 24.94 kcal Atomic # 6 Polarization: 1.32 SS G_CDS: 7.30 Total: 8.63 kcal Atomic # 7 Polarization: -115.85 SS G_CDS: -5.53 Total: -121.38 kcal Atomic # 8 Polarization: -38.18 SS G_CDS: -0.15 Total: -38.33 kcal Atomic # 14 Polarization: 46.32 SS G_CDS: 2.03 Total: 48.34 kcal Total: -81.79 3.99 -77.80 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001184673950.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.996 kcal (2) G-P(sol) polarization free energy of solvation -81.792 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.796 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.987 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.805 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.809 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds