Wall clock time and date at job start Tue Mar 31 2020 17:32:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35684 * 116.99979 * 2 1 4 4 C 1.38894 * 119.62415 * 179.97438 * 3 2 1 5 5 C 1.39572 * 118.94892 * 179.97438 * 4 3 2 6 6 C 1.48159 * 120.89597 * 180.02562 * 5 4 3 7 7 O 1.21512 * 120.00029 * 49.79948 * 6 5 4 8 8 N 1.34770 * 120.00230 * 229.80321 * 6 5 4 9 9 C 1.46930 * 120.63006 * 356.20764 * 8 6 5 10 10 C 1.53191 * 108.77897 * 126.41563 * 9 8 6 11 11 C 1.53046 * 109.31278 * 54.63167 * 10 9 8 12 12 H 1.08997 * 109.45665 * 58.65739 * 11 10 9 13 13 C 1.53002 * 109.45674 * 178.61725 * 11 10 9 14 14 N 1.46498 * 109.47053 * 295.06831 * 13 11 10 15 15 C 1.36939 * 119.99909 * 180.02562 * 14 13 11 16 16 H 1.08005 * 120.00024 * 359.97438 * 15 14 13 17 17 C 1.38811 * 120.00072 * 179.97438 * 15 14 13 18 18 N 1.31616 * 119.99955 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 120.00041 * 179.97438 * 17 15 14 20 20 H 1.48504 * 109.47078 * 0.02562 * 19 17 15 21 21 H 1.48501 * 109.46920 * 119.99870 * 19 17 15 22 22 H 1.48495 * 109.47206 * 240.00403 * 19 17 15 23 23 C 1.53038 * 109.53887 * 298.63833 * 11 10 9 24 24 H 1.09008 * 109.49779 * 301.41148 * 23 11 10 25 25 C 1.52998 * 109.49857 * 181.34803 * 23 11 10 26 26 C 1.46998 * 120.61971 * 176.22632 * 8 6 5 27 27 C 1.39971 * 118.21322 * 0.27388 * 5 4 3 28 28 C 1.37970 * 119.13340 * 359.45599 * 27 5 4 29 29 N 1.31910 * 120.97933 * 0.55782 * 28 27 5 30 30 H 1.08991 * 109.47247 * 300.00401 * 1 2 3 31 31 H 1.09000 * 109.46378 * 60.00499 * 1 2 3 32 32 H 1.08993 * 109.46680 * 180.02562 * 1 2 3 33 33 H 1.08007 * 120.52677 * 359.95275 * 4 3 2 34 34 H 1.09000 * 109.58764 * 6.62158 * 9 8 6 35 35 H 1.09007 * 109.70244 * 246.26811 * 9 8 6 36 36 H 1.09004 * 109.49363 * 294.68808 * 10 9 8 37 37 H 1.08998 * 109.52899 * 174.60337 * 10 9 8 38 38 H 1.08998 * 109.47468 * 55.06906 * 13 11 10 39 39 H 1.09000 * 109.46605 * 175.06874 * 13 11 10 40 40 H 0.97000 * 120.00446 * 0.02562 * 14 13 11 41 41 H 0.97005 * 120.00006 * 180.02562 * 18 17 15 42 42 H 1.09001 * 109.47065 * 60.06338 * 25 23 11 43 43 H 1.08994 * 109.47357 * 180.02562 * 25 23 11 44 44 H 1.09002 * 109.47409 * 300.06712 * 25 23 11 45 45 H 1.08997 * 109.57886 * 113.80229 * 26 8 6 46 46 H 1.09001 * 109.62797 * 353.36259 * 26 8 6 47 47 H 1.08006 * 120.43083 * 179.73225 * 27 5 4 48 48 H 1.08002 * 119.51450 * 180.27608 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2090 0.0000 4 6 3.4325 1.2726 0.0005 5 6 4.0514 2.5235 0.0000 6 6 5.5283 2.6416 0.0000 7 8 6.1881 2.0126 -0.8035 8 7 6.1400 3.4466 0.8911 9 6 5.3532 4.2764 1.8137 10 6 5.8185 3.9978 3.2464 11 6 7.3306 4.2156 3.3389 12 1 7.5683 5.2393 3.0497 13 6 7.7937 3.9717 4.7766 14 7 7.2006 4.9801 5.6584 15 6 7.4742 4.9626 7.0000 16 1 8.1270 4.2050 7.4082 17 6 6.9127 5.9184 7.8355 18 7 6.1168 6.8412 7.3382 19 14 7.2855 5.8940 9.6658 20 1 8.2000 4.7642 9.9697 21 1 7.9322 7.1725 10.0563 22 1 6.0211 5.7262 10.4263 23 6 8.0464 3.2415 2.4004 24 1 7.7895 2.2179 2.6736 25 6 9.5592 3.4370 2.5185 26 6 7.6070 3.5113 0.9580 27 6 3.2394 3.6636 0.0048 28 6 1.8681 3.5115 -0.0016 29 7 1.3179 2.3127 -0.0010 30 1 -0.3633 0.5138 0.8899 31 1 -0.3632 0.5138 -0.8901 32 1 -0.3632 -1.0276 0.0005 33 1 4.0231 0.3683 0.0017 34 1 4.2963 4.0278 1.7179 35 1 5.5034 5.3303 1.5793 36 1 5.5827 2.9671 3.5116 37 1 5.3107 4.6754 3.9327 38 1 7.4781 2.9786 5.0965 39 1 8.8804 4.0408 4.8249 40 1 6.6140 5.6602 5.2919 41 1 5.7247 7.5093 7.9220 42 1 9.8712 3.2461 3.5453 43 1 10.0686 2.7434 1.8497 44 1 9.8157 4.4606 2.2453 45 1 7.9432 4.5022 0.6528 46 1 8.0372 2.7580 0.2980 47 1 3.6805 4.6494 0.0089 48 1 1.2357 4.3870 -0.0024 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001184700576.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:32:53 Heat of formation + Delta-G solvation = -21.911272 kcal Electronic energy + Delta-G solvation = -28864.514922 eV Core-core repulsion = 24920.255617 eV Total energy + Delta-G solvation = -3944.259305 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.27207 -40.13149 -38.33937 -37.81304 -35.10958 -33.84827 -32.76309 -31.98871 -31.09317 -30.35368 -27.72518 -27.02521 -26.94223 -24.53658 -23.83657 -23.37840 -22.45153 -21.40149 -20.38791 -19.55272 -18.31537 -17.61904 -17.13895 -16.57638 -16.36538 -16.24593 -16.04033 -15.31923 -14.87739 -14.64844 -14.52387 -14.31422 -14.01828 -13.90889 -13.68177 -13.56758 -13.26210 -12.92264 -12.68205 -12.60199 -12.42972 -12.04303 -11.98168 -11.84854 -11.67899 -11.47520 -11.02788 -10.92863 -10.85353 -10.55297 -10.42848 -10.34065 -10.23234 -10.14390 -9.98253 -9.72170 -9.66144 -8.89429 -8.82556 -8.72191 -6.92511 -5.79174 -3.06900 0.54412 0.80558 2.33883 2.66796 2.93430 3.41491 3.42261 3.47646 3.49430 3.93575 4.11487 4.56443 4.58554 4.69317 4.72197 4.83677 4.89051 4.92084 4.97113 5.02423 5.07133 5.25410 5.30848 5.32626 5.38256 5.44147 5.47922 5.55541 5.64768 5.72420 5.73983 5.81703 5.86867 5.90817 5.95739 6.04053 6.18061 6.25250 6.29091 6.39653 6.46307 6.58788 6.80515 6.87163 6.90430 7.17945 7.46495 7.68978 7.87261 8.40346 9.51674 10.09745 10.44280 11.43887 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.011939 B = 0.002832 C = 0.002459 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2344.660272 B = 9885.225095 C =11385.128624 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 O -0.306 6.306 3 C 0.322 3.678 4 C -0.143 4.143 5 C -0.040 4.040 6 C 0.561 3.439 7 O -0.532 6.532 8 N -0.595 5.595 9 C 0.092 3.908 10 C -0.126 4.126 11 C -0.089 4.089 12 H 0.073 0.927 13 C 0.156 3.844 14 N -0.732 5.732 15 C -0.236 4.236 16 H 0.070 0.930 17 C -0.015 4.015 18 N -0.934 5.934 19 Si 0.905 3.095 20 H -0.281 1.281 21 H -0.292 1.292 22 H -0.292 1.292 23 C -0.098 4.098 24 H 0.073 0.927 25 C -0.147 4.147 26 C 0.118 3.882 27 C -0.185 4.185 28 C 0.142 3.858 29 N -0.530 5.530 30 H 0.061 0.939 31 H 0.059 0.941 32 H 0.097 0.903 33 H 0.149 0.851 34 H 0.091 0.909 35 H 0.076 0.924 36 H 0.064 0.936 37 H 0.090 0.910 38 H 0.016 0.984 39 H 0.025 0.975 40 H 0.383 0.617 41 H 0.254 0.746 42 H 0.069 0.931 43 H 0.052 0.948 44 H 0.057 0.943 45 H 0.071 0.929 46 H 0.091 0.909 47 H 0.147 0.853 48 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.315 -8.158 -18.090 21.149 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.212 6.212 3 C 0.143 3.857 4 C -0.164 4.164 5 C -0.051 4.051 6 C 0.348 3.652 7 O -0.410 6.410 8 N -0.327 5.327 9 C -0.030 4.030 10 C -0.164 4.164 11 C -0.108 4.108 12 H 0.091 0.909 13 C 0.029 3.971 14 N -0.376 5.376 15 C -0.368 4.368 16 H 0.088 0.912 17 C -0.210 4.210 18 N -0.583 5.583 19 Si 0.737 3.263 20 H -0.206 1.206 21 H -0.219 1.219 22 H -0.219 1.219 23 C -0.117 4.117 24 H 0.092 0.908 25 C -0.205 4.205 26 C -0.004 4.004 27 C -0.205 4.205 28 C -0.013 4.013 29 N -0.254 5.254 30 H 0.079 0.921 31 H 0.078 0.922 32 H 0.115 0.885 33 H 0.166 0.834 34 H 0.109 0.891 35 H 0.094 0.906 36 H 0.082 0.918 37 H 0.109 0.891 38 H 0.034 0.966 39 H 0.042 0.958 40 H 0.217 0.783 41 H 0.064 0.936 42 H 0.088 0.912 43 H 0.071 0.929 44 H 0.076 0.924 45 H 0.089 0.911 46 H 0.110 0.890 47 H 0.165 0.835 48 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -7.675 -8.899 -18.349 21.790 hybrid contribution 0.518 0.555 1.085 1.325 sum -7.157 -8.343 -17.264 20.467 Atomic orbital electron populations 1.22893 0.76891 1.03126 1.02600 1.86258 1.23158 1.24170 1.87662 1.19635 0.88901 0.84910 0.92235 1.20989 0.92088 0.98513 1.04807 1.20052 0.93951 0.93517 0.97561 1.18145 0.86564 0.79328 0.81165 1.90793 1.65735 1.45816 1.38613 1.48078 1.07618 1.42094 1.34931 1.22261 0.96082 0.94799 0.89822 1.21940 0.96740 1.03041 0.94669 1.21348 0.94151 0.99058 0.96236 0.90867 1.20754 0.95970 0.92824 0.87565 1.42379 1.57319 1.33411 1.04506 1.19270 1.23266 1.10203 0.84038 0.91247 1.24717 1.00179 0.98103 0.98038 1.69657 1.36006 1.18413 1.34227 0.86138 0.77394 0.77203 0.85602 1.20601 1.21894 1.21893 1.21469 0.96023 1.00405 0.93839 0.90836 1.21829 0.94233 1.01685 1.02705 1.21796 0.78171 1.02718 0.97683 1.22214 0.94822 0.99177 1.04327 1.22394 0.92450 0.93694 0.92809 1.67200 1.41175 0.98906 1.18149 0.92057 0.92205 0.88488 0.83365 0.89108 0.90590 0.91773 0.89109 0.96585 0.95752 0.78332 0.93611 0.91232 0.92941 0.92431 0.91056 0.89039 0.83491 0.81496 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.31 10.38 101.05 1.05 1.35 16 2 O -0.31 -3.34 10.47 -18.75 -0.20 -3.54 16 3 C 0.32 3.75 7.49 -17.16 -0.13 3.62 16 4 C -0.14 -1.69 9.78 -38.84 -0.38 -2.07 16 5 C -0.04 -0.47 5.06 -104.68 -0.53 -0.99 16 6 C 0.56 7.47 7.31 -12.19 -0.09 7.38 16 7 O -0.53 -8.65 16.48 5.36 0.09 -8.56 16 8 N -0.60 -7.20 2.97 -173.71 -0.52 -7.72 16 9 C 0.09 1.03 5.40 -3.71 -0.02 1.01 16 10 C -0.13 -1.77 5.25 -26.61 -0.14 -1.91 16 11 C -0.09 -1.32 1.73 -90.58 -0.16 -1.48 16 12 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 13 C 0.16 2.99 5.41 -4.04 -0.02 2.97 16 14 N -0.73 -17.76 5.32 -59.91 -0.32 -18.08 16 15 C -0.24 -6.49 9.99 -15.06 -0.15 -6.64 16 16 H 0.07 1.87 7.83 -52.48 -0.41 1.46 16 17 C -0.01 -0.41 5.50 -17.43 -0.10 -0.51 16 18 N -0.93 -27.56 13.06 55.49 0.72 -26.83 16 19 Si 0.91 22.16 29.55 -169.99 -5.02 17.14 16 20 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 21 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 22 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 23 C -0.10 -1.23 2.41 -90.51 -0.22 -1.45 16 24 H 0.07 0.98 8.14 -51.92 -0.42 0.56 16 25 C -0.15 -1.70 8.82 37.16 0.33 -1.37 16 26 C 0.12 1.40 5.71 -3.67 -0.02 1.37 16 27 C -0.18 -1.71 7.47 -39.03 -0.29 -2.00 16 28 C 0.14 1.26 11.17 -17.62 -0.20 1.06 16 29 N -0.53 -5.76 9.18 -13.38 -0.12 -5.88 16 30 H 0.06 0.47 8.10 -51.93 -0.42 0.05 16 31 H 0.06 0.44 8.10 -51.93 -0.42 0.02 16 32 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.15 1.71 8.06 -52.48 -0.42 1.28 16 34 H 0.09 0.92 4.49 -51.93 -0.23 0.69 16 35 H 0.08 0.77 8.14 -51.93 -0.42 0.34 16 36 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 37 H 0.09 1.47 7.15 -51.93 -0.37 1.10 16 38 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 39 H 0.02 0.48 6.14 -51.93 -0.32 0.16 16 40 H 0.38 9.64 6.84 -40.82 -0.28 9.36 16 41 H 0.25 7.26 8.31 -40.82 -0.34 6.92 16 42 H 0.07 0.88 6.30 -51.93 -0.33 0.55 16 43 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 44 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 45 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 46 H 0.09 1.13 7.03 -51.93 -0.37 0.77 16 47 H 0.15 1.07 7.03 -52.48 -0.37 0.70 16 48 H 0.17 0.94 8.06 -52.49 -0.42 0.52 16 LS Contribution 383.94 15.07 5.79 5.79 Total: -1.00 -32.88 383.94 -7.94 -40.83 By element: Atomic # 1 Polarization: 13.82 SS G_CDS: -7.30 Total: 6.52 kcal Atomic # 6 Polarization: 1.41 SS G_CDS: -1.06 Total: 0.34 kcal Atomic # 7 Polarization: -58.28 SS G_CDS: -0.23 Total: -58.51 kcal Atomic # 8 Polarization: -11.99 SS G_CDS: -0.11 Total: -12.10 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -5.02 Total: 17.14 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -32.88 -7.94 -40.83 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001184700576.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.915 kcal (2) G-P(sol) polarization free energy of solvation -32.882 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.968 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.944 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.826 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.911 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds