Wall clock time and date at job start Tue Mar 31 2020 17:32:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08992 * 109.49885 * 2 1 4 4 C 1.53190 * 109.50053 * 239.92407 * 2 1 3 5 5 N 1.46999 * 108.74099 * 294.66006 * 4 2 1 6 6 C 1.34773 * 120.61241 * 126.41058 * 5 4 2 7 7 O 1.21597 * 120.00235 * 354.26473 * 6 5 4 8 8 C 1.47458 * 119.99529 * 174.26903 * 6 5 4 9 9 C 1.41606 * 120.26006 * 324.75063 * 8 6 5 10 10 C 1.35960 * 119.01337 * 179.74437 * 9 8 6 11 11 C 1.40769 * 119.49799 * 0.51213 * 10 9 8 12 12 O 1.21964 * 119.74925 * 179.73982 * 11 10 9 13 13 N 1.34536 * 120.50385 * 359.75185 * 11 10 9 14 14 C 1.46497 * 119.48247 * 179.97438 * 13 11 10 15 15 C 1.34603 * 121.04227 * 359.97438 * 13 11 10 16 16 C 1.46928 * 118.75327 * 306.40475 * 5 4 2 17 17 C 1.53197 * 108.77105 * 53.61100 * 16 5 4 18 18 C 1.53037 * 109.31239 * 305.36166 * 17 16 5 19 19 H 1.09001 * 109.46080 * 301.34516 * 18 17 16 20 20 C 1.53009 * 109.45843 * 181.38883 * 18 17 16 21 21 N 1.46497 * 109.46967 * 64.93208 * 20 18 17 22 22 C 1.36943 * 119.99721 * 180.02562 * 21 20 18 23 23 H 1.07998 * 119.99818 * 359.97438 * 22 21 20 24 24 C 1.38816 * 119.99578 * 180.02562 * 22 21 20 25 25 N 1.31617 * 119.99218 * 179.97438 * 24 22 21 26 26 Si 1.86789 * 120.00379 * 359.97438 * 24 22 21 27 27 H 1.48503 * 109.47256 * 90.00293 * 26 24 22 28 28 H 1.48500 * 109.47265 * 210.00354 * 26 24 22 29 29 H 1.48501 * 109.47364 * 330.00225 * 26 24 22 30 30 H 1.08994 * 109.47379 * 300.01125 * 1 2 3 31 31 H 1.09002 * 109.46398 * 60.01024 * 1 2 3 32 32 H 1.08998 * 109.47115 * 180.02562 * 1 2 3 33 33 H 1.09004 * 109.58336 * 54.47555 * 4 2 1 34 34 H 1.08999 * 109.58868 * 174.89822 * 4 2 1 35 35 H 1.07995 * 120.49075 * 359.97438 * 9 8 6 36 36 H 1.07998 * 120.25173 * 180.24255 * 10 9 8 37 37 H 1.08994 * 109.47395 * 270.02564 * 14 13 11 38 38 H 1.09003 * 109.46525 * 30.02726 * 14 13 11 39 39 H 1.09000 * 109.47013 * 150.02521 * 14 13 11 40 40 H 1.08002 * 119.77466 * 179.97438 * 15 13 11 41 41 H 1.08992 * 109.58913 * 293.82783 * 16 5 4 42 42 H 1.09000 * 109.70502 * 173.46309 * 16 5 4 43 43 H 1.09007 * 109.49220 * 185.41186 * 17 16 5 44 44 H 1.08992 * 109.52614 * 65.33358 * 17 16 5 45 45 H 1.08997 * 109.47308 * 184.93068 * 20 18 17 46 46 H 1.08997 * 109.47098 * 304.93330 * 20 18 17 47 47 H 0.96999 * 120.00194 * 0.02562 * 21 20 18 48 48 H 0.97007 * 120.00083 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0274 0.0000 4 6 2.0414 -0.7237 -1.2496 5 7 1.6515 -2.1387 -1.1686 6 6 0.9745 -2.7228 -2.1770 7 8 0.5895 -2.0555 -3.1177 8 6 0.7006 -4.1713 -2.1393 9 6 1.6483 -5.0624 -1.5800 10 6 1.3674 -6.3924 -1.5536 11 6 0.1509 -6.8547 -2.0902 12 8 -0.1037 -8.0473 -2.0732 13 7 -0.7331 -5.9909 -2.6217 14 6 -1.9921 -6.4965 -3.1744 15 6 -0.4790 -4.6695 -2.6538 16 6 2.0140 -2.9041 0.0320 17 6 1.5029 -2.1553 1.2669 18 6 2.0407 -0.7226 1.2487 19 1 3.1304 -0.7440 1.2357 20 6 1.5605 0.0180 2.4985 21 7 2.1465 -0.6025 3.6891 22 6 1.8575 -0.1063 4.9324 23 1 1.1979 0.7427 5.0349 24 6 2.4132 -0.6939 6.0606 25 7 2.1357 -0.2166 7.2554 26 14 3.5545 -2.1618 5.8830 27 1 4.9547 -1.6865 5.7457 28 1 3.4408 -3.0256 7.0856 29 1 3.1756 -2.9405 4.6767 30 1 -0.3634 0.5140 0.8898 31 1 -0.3632 0.5137 -0.8901 32 1 -0.3633 -1.0276 0.0005 33 1 1.6008 -0.2728 -2.1389 34 1 3.1275 -0.6462 -1.2980 35 1 2.5788 -4.6907 -1.1771 36 1 2.0742 -7.0895 -1.1282 37 1 -1.8574 -6.7306 -4.2303 38 1 -2.2887 -7.3975 -2.6374 39 1 -2.7670 -5.7375 -3.0665 40 1 -1.2029 -3.9945 -3.0859 41 1 3.0978 -3.0043 0.0882 42 1 1.5573 -3.8929 -0.0107 43 1 1.8479 -2.6620 2.1682 44 1 0.4132 -2.1350 1.2555 45 1 1.8694 1.0619 2.4434 46 1 0.4735 -0.0365 2.5580 47 1 2.7392 -1.3647 3.5969 48 1 2.5237 -0.6274 8.0439 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001184725827.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:32:36 Heat of formation + Delta-G solvation = -10.800154 kcal Electronic energy + Delta-G solvation = -29384.749599 eV Core-core repulsion = 25440.972109 eV Total energy + Delta-G solvation = -3943.777491 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.96493 -40.50251 -38.32980 -37.15436 -35.57529 -34.95118 -33.36692 -31.91590 -30.74770 -30.51262 -28.43711 -27.37768 -26.88979 -24.65469 -24.12042 -23.17354 -22.86873 -21.44784 -20.55403 -18.78496 -18.21290 -17.74821 -17.44962 -17.27514 -16.60916 -16.16044 -15.78752 -15.55259 -15.04527 -14.73681 -14.44843 -14.29591 -14.19466 -13.87406 -13.72202 -13.53595 -13.44975 -13.10268 -12.89845 -12.78611 -12.60423 -12.43834 -12.33694 -12.06051 -11.68994 -11.51511 -11.41896 -11.09527 -10.85921 -10.65324 -10.47493 -10.42441 -10.36885 -10.21626 -10.13059 -9.89091 -9.60433 -8.91190 -8.79915 -8.40665 -7.24476 -5.79012 -3.14338 0.34675 1.00522 2.03665 2.58532 2.81762 3.25877 3.32583 3.35678 3.42593 4.05165 4.08741 4.33768 4.37647 4.56120 4.59964 4.67427 4.72500 4.75897 4.84117 4.88019 4.95854 5.09716 5.10867 5.28705 5.37313 5.44283 5.49340 5.51418 5.59055 5.64315 5.67248 5.71049 5.71692 5.79490 5.89951 5.92982 6.07057 6.13362 6.25120 6.27538 6.33481 6.48469 6.50284 6.66846 6.79490 7.18770 7.51721 7.92192 7.97726 8.40145 9.19382 9.91584 10.11372 11.39642 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.013037 B = 0.003144 C = 0.002731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2147.254153 B = 8903.720379 C =10251.783147 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.098 4.098 3 H 0.084 0.916 4 C 0.118 3.882 5 N -0.598 5.598 6 C 0.579 3.421 7 O -0.546 6.546 8 C -0.247 4.247 9 C -0.001 4.001 10 C -0.244 4.244 11 C 0.514 3.486 12 O -0.543 6.543 13 N -0.492 5.492 14 C 0.054 3.946 15 C 0.201 3.799 16 C 0.094 3.906 17 C -0.130 4.130 18 C -0.093 4.093 19 H 0.071 0.929 20 C 0.163 3.837 21 N -0.756 5.756 22 C -0.243 4.243 23 H 0.089 0.911 24 C 0.003 3.997 25 N -0.935 5.935 26 Si 0.885 3.115 27 H -0.285 1.285 28 H -0.291 1.291 29 H -0.277 1.277 30 H 0.063 0.937 31 H 0.050 0.950 32 H 0.054 0.946 33 H 0.093 0.907 34 H 0.068 0.932 35 H 0.146 0.854 36 H 0.156 0.844 37 H 0.081 0.919 38 H 0.098 0.902 39 H 0.090 0.910 40 H 0.175 0.825 41 H 0.072 0.928 42 H 0.092 0.908 43 H 0.082 0.918 44 H 0.073 0.927 45 H 0.026 0.974 46 H 0.029 0.971 47 H 0.360 0.640 48 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.085 -8.395 -23.954 25.709 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.117 4.117 3 H 0.103 0.897 4 C -0.004 4.004 5 N -0.330 5.330 6 C 0.367 3.633 7 O -0.425 6.425 8 C -0.255 4.255 9 C -0.022 4.022 10 C -0.265 4.265 11 C 0.317 3.683 12 O -0.424 6.424 13 N -0.201 5.201 14 C -0.087 4.087 15 C 0.069 3.931 16 C -0.029 4.029 17 C -0.168 4.168 18 C -0.112 4.112 19 H 0.090 0.910 20 C 0.035 3.965 21 N -0.401 5.401 22 C -0.373 4.373 23 H 0.107 0.893 24 C -0.193 4.193 25 N -0.583 5.583 26 Si 0.716 3.284 27 H -0.211 1.211 28 H -0.218 1.218 29 H -0.204 1.204 30 H 0.082 0.918 31 H 0.069 0.931 32 H 0.073 0.927 33 H 0.112 0.888 34 H 0.087 0.913 35 H 0.164 0.836 36 H 0.173 0.827 37 H 0.099 0.901 38 H 0.117 0.883 39 H 0.109 0.891 40 H 0.192 0.808 41 H 0.091 0.909 42 H 0.110 0.890 43 H 0.100 0.900 44 H 0.091 0.909 45 H 0.044 0.956 46 H 0.047 0.953 47 H 0.192 0.808 48 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -4.589 -8.722 -24.260 26.185 hybrid contribution 0.941 -0.959 0.251 1.367 sum -3.648 -9.681 -24.008 26.142 Atomic orbital electron populations 1.21862 0.94735 1.01954 1.01689 1.21458 0.96830 0.99572 0.93863 0.89741 1.21745 0.99454 0.79721 0.99478 1.47914 1.55768 1.11726 1.17593 1.17636 0.77615 0.85903 0.82107 1.90782 1.52374 1.64838 1.34482 1.19381 0.97833 0.94653 1.13654 1.21707 0.98063 0.92616 0.89856 1.22027 0.98513 0.96700 1.09271 1.17289 0.85003 0.86232 0.79796 1.90951 1.77700 1.14711 1.59080 1.45199 1.19444 1.06835 1.48580 1.22302 0.83285 1.02587 1.00540 1.22177 0.96453 0.84212 0.90307 1.22304 1.00401 0.95670 0.84496 1.22014 1.01896 0.96043 0.96893 1.21374 1.00244 0.94658 0.94941 0.91023 1.20695 0.96302 0.94879 0.84575 1.42731 1.57549 1.37227 1.02622 1.19062 1.24196 1.12095 0.81937 0.89310 1.24682 1.00318 0.99144 0.95122 1.69703 1.48338 1.43200 0.97065 0.86544 0.81503 0.83563 0.76835 1.21121 1.21761 1.20373 0.91833 0.93135 0.92674 0.88831 0.91327 0.83598 0.82670 0.90062 0.88286 0.89129 0.80797 0.90934 0.89017 0.89952 0.90874 0.95575 0.95288 0.80750 0.93064 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.67 8.38 37.16 0.31 -1.35 16 2 C -0.10 -1.08 2.72 -90.50 -0.25 -1.33 16 3 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 4 C 0.12 1.19 5.84 -3.67 -0.02 1.17 16 5 N -0.60 -6.05 2.41 -173.97 -0.42 -6.47 16 6 C 0.58 6.30 7.38 -12.51 -0.09 6.20 16 7 O -0.55 -7.39 16.21 5.28 0.09 -7.30 16 8 C -0.25 -2.22 5.28 -104.95 -0.55 -2.78 16 9 C 0.00 -0.01 7.39 -39.12 -0.29 -0.30 16 10 C -0.24 -2.26 9.97 -39.44 -0.39 -2.65 16 11 C 0.51 5.66 7.40 -15.41 -0.11 5.55 16 12 O -0.54 -7.76 16.58 4.95 0.08 -7.68 16 13 N -0.49 -4.03 2.95 -126.73 -0.37 -4.41 16 14 C 0.05 0.28 10.33 59.85 0.62 0.90 16 15 C 0.20 1.53 9.85 -16.42 -0.16 1.37 16 16 C 0.09 0.89 4.78 -3.71 -0.02 0.87 16 17 C -0.13 -1.62 4.90 -26.61 -0.13 -1.75 16 18 C -0.09 -1.24 1.96 -90.57 -0.18 -1.41 16 19 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 20 C 0.16 2.90 5.19 -4.04 -0.02 2.88 16 21 N -0.76 -17.04 5.12 -59.91 -0.31 -17.35 16 22 C -0.24 -6.73 10.47 -15.05 -0.16 -6.89 16 23 H 0.09 2.65 8.06 -52.49 -0.42 2.23 16 24 C 0.00 0.09 5.50 -17.43 -0.10 -0.01 16 25 N -0.93 -29.12 13.97 55.49 0.78 -28.34 16 26 Si 0.89 21.52 27.73 -169.99 -4.71 16.80 16 27 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 28 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 29 H -0.28 -6.18 6.52 56.52 0.37 -5.81 16 30 H 0.06 0.78 6.58 -51.93 -0.34 0.44 16 31 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.05 0.66 5.97 -51.93 -0.31 0.35 16 33 H 0.09 1.01 7.00 -51.93 -0.36 0.65 16 34 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.15 0.96 6.10 -52.49 -0.32 0.64 16 36 H 0.16 1.27 8.06 -52.49 -0.42 0.85 16 37 H 0.08 0.34 8.14 -51.93 -0.42 -0.09 16 38 H 0.10 0.63 7.36 -51.93 -0.38 0.24 16 39 H 0.09 0.23 8.00 -51.93 -0.42 -0.19 16 40 H 0.17 0.96 7.93 -52.49 -0.42 0.54 16 41 H 0.07 0.60 8.05 -51.93 -0.42 0.19 16 42 H 0.09 0.78 4.44 -51.93 -0.23 0.55 16 43 H 0.08 1.17 7.15 -51.93 -0.37 0.80 16 44 H 0.07 0.95 6.34 -51.93 -0.33 0.62 16 45 H 0.03 0.49 8.14 -51.93 -0.42 0.06 16 46 H 0.03 0.54 6.74 -51.93 -0.35 0.19 16 47 H 0.36 7.81 4.71 -40.82 -0.19 7.62 16 48 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 LS Contribution 372.71 15.07 5.62 5.62 Total: -1.00 -35.63 372.71 -7.79 -43.42 By element: Atomic # 1 Polarization: 12.22 SS G_CDS: -6.99 Total: 5.23 kcal Atomic # 6 Polarization: 2.03 SS G_CDS: -1.54 Total: 0.48 kcal Atomic # 7 Polarization: -56.25 SS G_CDS: -0.33 Total: -56.57 kcal Atomic # 8 Polarization: -15.15 SS G_CDS: 0.17 Total: -14.98 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -4.71 Total: 16.80 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -35.63 -7.79 -43.42 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001184725827.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.618 kcal (2) G-P(sol) polarization free energy of solvation -35.630 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.012 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.789 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.418 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.800 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds