Wall clock time and date at job start Tue Mar 31 2020 17:32:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08997 * 109.49627 * 2 1 4 4 C 1.53192 * 109.49568 * 239.93308 * 2 1 3 5 5 N 1.46925 * 108.77273 * 185.41275 * 4 2 1 6 6 C 1.34781 * 120.63170 * 233.63216 * 5 4 2 7 7 O 1.21606 * 119.99922 * 354.74614 * 6 5 4 8 8 C 1.47453 * 119.99989 * 174.75276 * 6 5 4 9 9 C 1.41598 * 120.25643 * 260.23440 * 8 6 5 10 10 C 1.35975 * 119.01188 * 179.79107 * 9 8 6 11 11 C 1.40763 * 119.49571 * 0.50986 * 10 9 8 12 12 O 1.21962 * 119.74780 * 179.73805 * 11 10 9 13 13 N 1.34535 * 120.50560 * 359.71044 * 11 10 9 14 14 C 1.46502 * 119.48268 * 180.02562 * 13 11 10 15 15 C 1.34602 * 121.04441 * 0.02846 * 13 11 10 16 16 C 1.46923 * 118.74022 * 53.61405 * 5 4 2 17 17 C 1.53199 * 108.76985 * 306.38704 * 16 5 4 18 18 C 1.53040 * 109.49409 * 120.06515 * 2 1 3 19 19 H 1.08999 * 109.43549 * 61.28098 * 18 2 1 20 20 C 1.53002 * 109.48630 * 301.31723 * 18 2 1 21 21 N 1.46498 * 109.46955 * 174.91962 * 20 18 2 22 22 C 1.36929 * 119.99848 * 180.02562 * 21 20 18 23 23 H 1.08006 * 120.00270 * 359.97438 * 22 21 20 24 24 C 1.38811 * 120.00005 * 179.97438 * 22 21 20 25 25 N 1.31616 * 120.00431 * 359.97438 * 24 22 21 26 26 Si 1.86811 * 120.00134 * 179.97438 * 24 22 21 27 27 H 1.48499 * 109.46598 * 59.99957 * 26 24 22 28 28 H 1.48495 * 109.47096 * 179.97438 * 26 24 22 29 29 H 1.48501 * 109.46876 * 300.00020 * 26 24 22 30 30 H 1.09000 * 109.47136 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47614 * 300.06600 * 1 2 3 32 32 H 1.09000 * 109.47229 * 60.06427 * 1 2 3 33 33 H 1.09001 * 109.58462 * 65.62828 * 4 2 1 34 34 H 1.08997 * 109.70710 * 305.27296 * 4 2 1 35 35 H 1.08000 * 120.49365 * 0.02562 * 9 8 6 36 36 H 1.08000 * 120.25303 * 180.24608 * 10 9 8 37 37 H 1.09007 * 109.46915 * 270.02622 * 14 13 11 38 38 H 1.09000 * 109.46582 * 30.01852 * 14 13 11 39 39 H 1.08992 * 109.47348 * 150.02318 * 14 13 11 40 40 H 1.07998 * 119.77213 * 179.97438 * 15 13 11 41 41 H 1.08999 * 109.58728 * 186.60749 * 16 5 4 42 42 H 1.09000 * 109.58997 * 66.17092 * 16 5 4 43 43 H 1.09004 * 109.49058 * 174.58659 * 17 16 5 44 44 H 1.08999 * 109.49826 * 294.64580 * 17 16 5 45 45 H 1.09001 * 109.47237 * 294.92197 * 20 18 2 46 46 H 1.09003 * 109.46475 * 54.91988 * 20 18 2 47 47 H 0.97004 * 119.99763 * 359.97438 * 21 20 18 48 48 H 0.96992 * 120.00462 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0413 -0.7235 -1.2498 5 7 3.5045 -0.8288 -1.1698 6 6 4.2811 -0.3850 -2.1780 7 8 3.7714 0.0200 -3.2051 8 6 5.7488 -0.3907 -2.0357 9 6 6.4375 0.7995 -1.6983 10 6 7.7907 0.7645 -1.5693 11 6 8.4762 -0.4461 -1.7835 12 8 9.6903 -0.4817 -1.6738 13 7 7.8022 -1.5644 -2.1079 14 6 8.5382 -2.8123 -2.3253 15 6 6.4623 -1.5549 -2.2359 16 6 4.1053 -1.4268 0.0303 17 6 3.5708 -0.6953 1.2658 18 6 2.0407 -0.7228 1.2486 19 1 1.6961 -1.7568 1.2355 20 6 1.5043 -0.0227 2.4988 21 7 1.8923 -0.7837 3.6890 22 6 1.5212 -0.3464 4.9323 23 1 0.9427 0.5599 5.0357 24 6 1.8883 -1.0677 6.0600 25 7 2.5928 -2.1724 5.9342 26 14 1.3826 -0.4707 7.7564 27 1 -0.0988 -0.4075 7.8375 28 1 1.8945 -1.4113 8.7851 29 1 1.9496 0.8809 7.9948 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5148 0.8893 32 1 -0.3634 0.5128 -0.8905 33 1 1.7637 -0.1574 -2.1389 34 1 1.6053 -1.7212 -1.3011 35 1 5.8958 1.7207 -1.5419 36 1 8.3358 1.6597 -1.3087 37 1 8.8180 -2.8908 -3.3759 38 1 9.4371 -2.8161 -1.7088 39 1 7.9073 -3.6584 -2.0531 40 1 5.9421 -2.4644 -2.4974 41 1 5.1895 -1.3246 -0.0141 42 1 3.8375 -2.4819 0.0861 43 1 3.9334 -1.1903 2.1667 44 1 3.9164 0.3384 1.2545 45 1 1.9204 0.9830 2.5589 46 1 0.4173 0.0366 2.4438 47 1 2.4115 -1.5979 3.5961 48 1 2.8490 -2.6766 6.7221 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001184725828.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:32:38 Heat of formation + Delta-G solvation = -47.331952 kcal Electronic energy + Delta-G solvation = -29083.643950 eV Core-core repulsion = 25138.282322 eV Total energy + Delta-G solvation = -3945.361628 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.60344 -41.22630 -39.25873 -37.99025 -36.52864 -35.74337 -34.90422 -33.41799 -31.99060 -31.34452 -28.85841 -28.33055 -27.64759 -25.77004 -25.12036 -24.16084 -23.62329 -22.69086 -21.35768 -20.46309 -19.15230 -18.74959 -18.57429 -17.91720 -17.48272 -17.06977 -16.76853 -16.49944 -16.02281 -15.73079 -15.53690 -15.35855 -15.20021 -15.17673 -14.46242 -14.38992 -14.28953 -14.04905 -13.95408 -13.82713 -13.37543 -13.18368 -13.11597 -12.99463 -12.92421 -12.80510 -12.67135 -12.55388 -12.21660 -11.92109 -11.87034 -11.59254 -11.46844 -11.25983 -11.20028 -11.13142 -11.00451 -10.84097 -9.66641 -9.09792 -8.93385 -7.92787 -5.19628 -0.25891 0.45873 1.32970 1.48673 1.50450 1.56561 1.58222 2.01367 2.47990 2.57880 3.32370 3.40864 3.53293 3.70195 3.78479 3.79640 3.81565 3.90981 4.05173 4.08213 4.28918 4.35065 4.37666 4.40563 4.44935 4.57336 4.67225 4.71985 4.75559 4.79308 4.82267 4.86558 4.89822 4.91664 5.04383 5.07896 5.15337 5.17585 5.25401 5.31021 5.34468 5.41068 5.50314 5.56010 5.64454 5.83918 6.30348 6.33142 6.80119 7.04213 7.37433 8.14803 8.38493 9.30236 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.011946 B = 0.002962 C = 0.002538 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2343.284373 B = 9451.170088 C =11028.482329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.088 4.088 3 H 0.066 0.934 4 C 0.121 3.879 5 N -0.595 5.595 6 C 0.586 3.414 7 O -0.570 6.570 8 C -0.249 4.249 9 C 0.022 3.978 10 C -0.257 4.257 11 C 0.502 3.498 12 O -0.591 6.591 13 N -0.484 5.484 14 C 0.047 3.953 15 C 0.193 3.807 16 C 0.115 3.885 17 C -0.121 4.121 18 C -0.078 4.078 19 H 0.072 0.928 20 C 0.155 3.845 21 N -0.741 5.741 22 C -0.245 4.245 23 H 0.070 0.930 24 C -0.071 4.071 25 N -0.966 5.966 26 Si 0.967 3.033 27 H -0.279 1.279 28 H -0.295 1.295 29 H -0.281 1.281 30 H 0.062 0.938 31 H 0.053 0.947 32 H 0.069 0.931 33 H 0.089 0.911 34 H 0.086 0.914 35 H 0.148 0.852 36 H 0.157 0.843 37 H 0.093 0.907 38 H 0.082 0.918 39 H 0.127 0.873 40 H 0.209 0.791 41 H 0.094 0.906 42 H 0.091 0.909 43 H 0.063 0.937 44 H 0.056 0.944 45 H 0.008 0.992 46 H 0.026 0.974 47 H 0.376 0.624 48 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.846 -1.798 -20.800 21.433 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.108 4.108 3 H 0.084 0.916 4 C -0.001 4.001 5 N -0.326 5.326 6 C 0.373 3.627 7 O -0.449 6.449 8 C -0.258 4.258 9 C 0.000 4.000 10 C -0.278 4.278 11 C 0.306 3.694 12 O -0.478 6.478 13 N -0.190 5.190 14 C -0.093 4.093 15 C 0.061 3.939 16 C -0.007 4.007 17 C -0.160 4.160 18 C -0.097 4.097 19 H 0.090 0.910 20 C 0.029 3.971 21 N -0.384 5.384 22 C -0.377 4.377 23 H 0.088 0.912 24 C -0.263 4.263 25 N -0.616 5.616 26 Si 0.796 3.204 27 H -0.206 1.206 28 H -0.221 1.221 29 H -0.207 1.207 30 H 0.081 0.919 31 H 0.072 0.928 32 H 0.088 0.912 33 H 0.107 0.893 34 H 0.104 0.896 35 H 0.166 0.834 36 H 0.174 0.826 37 H 0.111 0.889 38 H 0.101 0.899 39 H 0.146 0.854 40 H 0.226 0.774 41 H 0.112 0.888 42 H 0.109 0.891 43 H 0.082 0.918 44 H 0.075 0.925 45 H 0.026 0.974 46 H 0.043 0.957 47 H 0.209 0.791 48 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 5.315 -1.552 -21.155 21.868 hybrid contribution 0.020 0.292 1.441 1.470 sum 5.335 -1.260 -19.714 20.462 Atomic orbital electron populations 1.21802 0.93531 1.02656 1.02252 1.21361 0.96777 0.99298 0.93315 0.91579 1.21738 0.78313 1.01835 0.98204 1.48189 1.07146 1.59282 1.17938 1.17879 0.85955 0.76398 0.82429 1.90798 1.75597 1.48908 1.29593 1.19287 0.93375 0.95239 1.17870 1.21387 0.93580 0.97400 0.87610 1.22006 0.94998 0.98371 1.12454 1.17469 0.87748 0.84984 0.79186 1.90916 1.14761 1.85784 1.56290 1.45212 1.07234 1.12902 1.53687 1.22576 0.99051 0.83039 1.04606 1.22579 0.82331 0.99681 0.89344 1.21849 0.98778 0.97683 0.82373 1.21820 0.95429 1.00921 0.97810 1.21224 0.95172 0.99797 0.93490 0.90995 1.20902 0.96750 0.93547 0.85885 1.42534 1.65331 1.29026 1.01518 1.19555 1.26881 1.05919 0.85350 0.91189 1.25452 1.01702 0.98011 1.01180 1.69770 1.44350 1.18359 1.29158 0.85309 0.77884 0.77112 0.80048 1.20557 1.22107 1.20717 0.91916 0.92800 0.91157 0.89299 0.89592 0.83442 0.82572 0.88890 0.89908 0.85428 0.77433 0.88753 0.89078 0.91830 0.92514 0.97379 0.95661 0.79140 0.94040 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.94 8.82 71.98 0.63 -2.30 16 2 C -0.09 -1.92 2.41 -10.72 -0.03 -1.95 16 3 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 4 C 0.12 2.31 5.70 86.36 0.49 2.80 16 5 N -0.59 -11.27 2.97 -822.74 -2.45 -13.71 16 6 C 0.59 12.16 7.10 86.67 0.62 12.78 16 7 O -0.57 -15.84 16.54 -4.05 -0.07 -15.91 16 8 C -0.25 -4.27 3.90 -20.08 -0.08 -4.35 16 9 C 0.02 0.40 9.86 22.57 0.22 0.63 16 10 C -0.26 -5.27 9.97 22.36 0.22 -5.05 16 11 C 0.50 11.64 7.40 84.90 0.63 12.27 16 12 O -0.59 -18.24 16.58 -5.19 -0.09 -18.33 16 13 N -0.48 -7.35 2.95 -673.10 -1.99 -9.33 16 14 C 0.05 0.42 10.33 127.77 1.32 1.74 16 15 C 0.19 2.31 9.36 84.21 0.79 3.10 16 16 C 0.12 2.09 6.30 86.37 0.54 2.63 16 17 C -0.12 -3.15 5.25 30.67 0.16 -2.99 16 18 C -0.08 -2.14 1.73 -10.77 -0.02 -2.16 16 19 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 20 C 0.16 5.79 5.41 86.38 0.47 6.26 16 21 N -0.74 -35.80 5.32 -343.45 -1.83 -37.63 16 22 C -0.25 -13.39 9.99 84.03 0.84 -12.55 16 23 H 0.07 3.72 7.83 -2.91 -0.02 3.70 16 24 C -0.07 -3.98 5.50 84.86 0.47 -3.51 16 25 N -0.97 -57.23 13.06 21.65 0.28 -56.95 16 26 Si 0.97 45.37 29.55 68.60 2.03 47.39 16 27 H -0.28 -12.66 7.11 99.48 0.71 -11.96 16 28 H -0.29 -13.91 7.11 99.48 0.71 -13.20 16 29 H -0.28 -12.80 7.11 99.48 0.71 -12.10 16 30 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 31 H 0.05 1.26 6.30 -2.39 -0.02 1.24 16 32 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 33 H 0.09 1.82 7.04 -2.39 -0.02 1.80 16 34 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 35 H 0.15 2.37 8.06 -2.91 -0.02 2.34 16 36 H 0.16 3.00 8.06 -2.91 -0.02 2.98 16 37 H 0.09 0.61 8.14 -2.38 -0.02 0.59 16 38 H 0.08 1.07 7.36 -2.39 -0.02 1.06 16 39 H 0.13 0.17 8.00 -2.39 -0.02 0.15 16 40 H 0.21 0.81 8.02 -2.91 -0.02 0.78 16 41 H 0.09 1.50 5.88 -2.39 -0.01 1.49 16 42 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 43 H 0.06 2.01 7.15 -2.38 -0.02 1.99 16 44 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 45 H 0.01 0.32 8.14 -2.39 -0.02 0.30 16 46 H 0.03 0.95 6.14 -2.39 -0.01 0.94 16 47 H 0.38 18.98 6.85 -92.71 -0.63 18.35 16 48 H 0.25 14.50 8.31 -92.71 -0.77 13.73 16 Total: -1.00 -76.26 385.61 3.51 -72.75 By element: Atomic # 1 Polarization: 24.05 SS G_CDS: 0.33 Total: 24.38 kcal Atomic # 6 Polarization: 0.06 SS G_CDS: 7.28 Total: 7.34 kcal Atomic # 7 Polarization: -111.65 SS G_CDS: -5.98 Total: -117.63 kcal Atomic # 8 Polarization: -34.08 SS G_CDS: -0.15 Total: -34.23 kcal Atomic # 14 Polarization: 45.37 SS G_CDS: 2.03 Total: 47.39 kcal Total: -76.26 3.51 -72.75 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001184725828.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.420 kcal (2) G-P(sol) polarization free energy of solvation -76.264 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.844 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.512 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.752 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.332 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds