Wall clock time and date at job start Tue Mar 31 2020 17:32:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.35498 * 116.99541 * 2 1 4 4 C 1.39169 * 119.52246 * 179.72816 * 3 2 1 5 5 C 1.37962 * 119.26027 * 179.78885 * 4 3 2 6 6 C 1.40289 * 118.35408 * 0.47505 * 5 4 3 7 7 C 1.47619 * 120.49411 * 179.72693 * 6 5 4 8 8 O 1.21577 * 119.99946 * 221.07978 * 7 6 5 9 9 N 1.34775 * 120.00064 * 41.07471 * 7 6 5 10 10 C 1.46929 * 120.63329 * 5.54650 * 9 7 6 11 11 C 1.53614 * 108.54541 * 126.36467 * 10 9 7 12 12 C 1.53037 * 109.24393 * 54.85625 * 11 10 9 13 13 H 1.09009 * 109.46068 * 58.53267 * 12 11 10 14 14 C 1.53000 * 109.46355 * 178.48789 * 12 11 10 15 15 N 1.46503 * 109.47283 * 295.07211 * 14 12 11 16 16 C 1.36930 * 119.99819 * 179.97438 * 15 14 12 17 17 H 1.08000 * 120.00227 * 0.02562 * 16 15 14 18 18 C 1.38815 * 119.99786 * 179.97438 * 16 15 14 19 19 N 1.31620 * 119.99847 * 180.02562 * 18 16 15 20 20 Si 1.86801 * 120.00117 * 359.97438 * 18 16 15 21 21 H 1.48499 * 109.46869 * 89.99956 * 20 18 16 22 22 H 1.48497 * 109.47283 * 210.00118 * 20 18 16 23 23 H 1.48497 * 109.47000 * 330.00367 * 20 18 16 24 24 C 1.53041 * 109.53788 * 298.51166 * 12 11 10 25 25 H 1.08992 * 109.52180 * 301.39437 * 24 12 11 26 26 C 1.53004 * 109.49509 * 181.31469 * 24 12 11 27 27 C 1.46930 * 120.62994 * 185.82057 * 9 7 6 28 28 C 1.39521 * 119.00786 * 359.74557 * 6 5 4 29 29 N 1.31668 * 120.62276 * 0.02562 * 28 6 5 30 30 H 1.09008 * 109.46594 * 180.02562 * 1 2 3 31 31 H 1.08990 * 109.47148 * 299.99591 * 1 2 3 32 32 H 1.09000 * 109.47112 * 60.00714 * 1 2 3 33 33 H 1.07995 * 120.37101 * 0.02562 * 4 3 2 34 34 H 1.07993 * 120.82053 * 180.21722 * 5 4 3 35 35 H 1.08998 * 109.58569 * 246.20139 * 10 9 7 36 36 H 1.08999 * 109.58238 * 6.61975 * 10 9 7 37 37 H 1.09001 * 109.63758 * 294.86265 * 11 10 9 38 38 H 1.09006 * 109.46032 * 174.74048 * 11 10 9 39 39 H 1.09004 * 109.47019 * 55.07272 * 14 12 11 40 40 H 1.09004 * 109.47343 * 175.07057 * 14 12 11 41 41 H 0.96997 * 119.99595 * 359.97438 * 15 14 12 42 42 H 0.97001 * 120.00142 * 180.02562 * 19 18 16 43 43 H 1.08999 * 109.46960 * 300.15826 * 26 24 12 44 44 H 1.08992 * 109.47263 * 60.16182 * 26 24 12 45 45 H 1.09005 * 109.46711 * 180.16266 * 26 24 12 46 46 H 1.09002 * 109.58707 * 353.37985 * 27 9 7 47 47 H 1.09005 * 109.58477 * 113.80263 * 27 9 7 48 48 H 1.07992 * 119.68573 * 180.02562 * 28 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0441 1.2073 0.0000 4 6 3.4344 1.2687 0.0057 5 6 4.0551 2.5008 0.0013 6 6 3.2522 3.6513 0.0013 7 6 3.8665 4.9935 0.0027 8 8 3.3973 5.8761 0.6947 9 7 4.9478 5.2406 -0.7631 10 6 5.4535 4.2232 -1.6948 11 6 5.5562 4.8497 -3.0936 12 6 6.4145 6.1145 -3.0181 13 1 7.4028 5.8603 -2.6346 14 6 6.5513 6.7219 -4.4157 15 7 7.2930 5.7993 -5.2788 16 6 7.5393 6.1313 -6.5842 17 1 7.1872 7.0736 -6.9774 18 6 8.2425 5.2573 -7.4019 19 7 8.4797 5.5767 -8.6565 20 14 8.8533 3.6285 -6.7212 21 1 7.8139 2.5871 -6.9221 22 1 10.0961 3.2307 -7.4299 23 1 9.1354 3.7729 -5.2704 24 6 5.7505 7.1287 -2.0841 25 1 4.7527 7.3651 -2.4534 26 6 6.5925 8.4052 -2.0349 27 6 5.6467 6.5301 -0.6778 28 6 1.8644 3.5078 0.0003 29 7 1.3138 2.3117 0.0000 30 1 -0.3633 -1.0278 0.0005 31 1 -0.3633 0.5137 0.8899 32 1 -0.3633 0.5137 -0.8900 33 1 4.0210 0.3620 0.0098 34 1 5.1322 2.5778 0.0020 35 1 6.4377 3.8865 -1.3691 36 1 4.7660 3.3778 -1.7210 37 1 4.5601 5.1070 -3.4537 38 1 6.0175 4.1373 -3.7776 39 1 5.5603 6.8948 -4.8353 40 1 7.0880 7.6684 -4.3496 41 1 7.6095 4.9532 -4.9255 42 1 8.9707 4.9659 -9.2280 43 1 7.5906 8.1681 -1.6666 44 1 6.6661 8.8307 -3.0356 45 1 6.1207 9.1262 -1.3672 46 1 5.0867 7.2073 -0.0328 47 1 6.6464 6.3777 -0.2708 48 1 1.2359 4.3860 -0.0001 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001184770082.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:32:00 Heat of formation + Delta-G solvation = -19.106334 kcal Electronic energy + Delta-G solvation = -28899.261800 eV Core-core repulsion = 24955.124126 eV Total energy + Delta-G solvation = -3944.137674 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.34882 -40.20883 -38.48142 -37.76272 -35.27207 -33.96705 -32.83956 -32.08849 -31.27309 -30.71613 -27.88267 -27.24100 -26.90812 -24.47714 -23.91712 -23.25016 -22.50228 -21.29801 -20.38214 -19.55830 -18.84327 -17.83921 -17.55410 -17.16326 -16.50161 -16.28628 -15.39561 -15.03245 -14.92146 -14.88215 -14.51586 -14.36949 -14.22296 -13.91402 -13.78787 -13.50265 -13.32373 -13.05236 -12.94281 -12.84978 -12.47742 -12.26740 -12.05120 -11.96159 -11.76851 -11.57298 -11.35832 -11.03123 -10.91990 -10.58971 -10.52894 -10.43212 -10.23300 -10.15854 -10.07588 -9.83145 -9.60193 -8.98583 -8.91102 -8.71744 -7.23816 -5.78666 -3.13884 0.44556 0.75354 2.46206 2.61376 2.77754 3.33096 3.34736 3.36821 3.41988 3.83834 4.16672 4.38623 4.56171 4.57798 4.61734 4.69212 4.76080 4.86004 4.88340 4.93354 4.93959 5.15434 5.20312 5.23989 5.26963 5.35470 5.41657 5.51266 5.57720 5.60146 5.65555 5.68184 5.73945 5.76585 5.85915 5.87553 6.09268 6.14707 6.18651 6.30955 6.35481 6.41622 6.71216 6.73838 6.79146 7.15823 7.36189 7.91313 7.98064 8.40478 9.19651 9.91868 10.11844 11.39995 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.011448 B = 0.003087 C = 0.002568 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2445.274015 B = 9068.993792 C =10898.780273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.304 6.304 3 C 0.339 3.661 4 C -0.194 4.194 5 C -0.010 4.010 6 C -0.220 4.220 7 C 0.570 3.430 8 O -0.538 6.538 9 N -0.602 5.602 10 C 0.096 3.904 11 C -0.127 4.127 12 C -0.093 4.093 13 H 0.072 0.928 14 C 0.160 3.840 15 N -0.755 5.755 16 C -0.242 4.242 17 H 0.089 0.911 18 C 0.003 3.997 19 N -0.935 5.935 20 Si 0.884 3.116 21 H -0.284 1.284 22 H -0.291 1.291 23 H -0.277 1.277 24 C -0.096 4.096 25 H 0.076 0.924 26 C -0.148 4.148 27 C 0.118 3.882 28 C 0.198 3.802 29 N -0.542 5.542 30 H 0.098 0.902 31 H 0.061 0.939 32 H 0.062 0.938 33 H 0.150 0.850 34 H 0.150 0.850 35 H 0.073 0.927 36 H 0.087 0.913 37 H 0.069 0.931 38 H 0.082 0.918 39 H 0.025 0.975 40 H 0.033 0.967 41 H 0.359 0.641 42 H 0.259 0.741 43 H 0.056 0.944 44 H 0.070 0.930 45 H 0.053 0.947 46 H 0.093 0.907 47 H 0.069 0.931 48 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.724 -7.709 21.676 25.821 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.210 6.210 3 C 0.160 3.840 4 C -0.215 4.215 5 C -0.036 4.036 6 C -0.226 4.226 7 C 0.358 3.642 8 O -0.417 6.417 9 N -0.334 5.334 10 C -0.026 4.026 11 C -0.165 4.165 12 C -0.112 4.112 13 H 0.090 0.910 14 C 0.034 3.966 15 N -0.401 5.401 16 C -0.372 4.372 17 H 0.107 0.893 18 C -0.193 4.193 19 N -0.583 5.583 20 Si 0.714 3.286 21 H -0.211 1.211 22 H -0.217 1.217 23 H -0.204 1.204 24 C -0.116 4.116 25 H 0.094 0.906 26 C -0.206 4.206 27 C -0.004 4.004 28 C 0.041 3.959 29 N -0.266 5.266 30 H 0.116 0.884 31 H 0.080 0.920 32 H 0.081 0.919 33 H 0.167 0.833 34 H 0.168 0.832 35 H 0.091 0.909 36 H 0.106 0.894 37 H 0.088 0.912 38 H 0.101 0.899 39 H 0.043 0.957 40 H 0.051 0.949 41 H 0.192 0.808 42 H 0.069 0.931 43 H 0.075 0.925 44 H 0.089 0.911 45 H 0.072 0.928 46 H 0.111 0.889 47 H 0.087 0.913 48 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -12.772 -7.483 21.824 26.370 hybrid contribution 1.220 -1.143 0.161 1.680 sum -11.552 -8.626 21.985 26.290 Atomic orbital electron populations 1.22937 0.76707 1.03251 1.02815 1.86221 1.23395 1.24429 1.86970 1.20104 0.89517 0.84824 0.89559 1.21018 0.91950 0.99585 1.08949 1.21676 1.00789 0.90390 0.90716 1.20737 0.95738 0.94306 1.11807 1.17946 0.79663 0.86945 0.79623 1.90787 1.62073 1.46227 1.42565 1.48029 1.28891 1.16621 1.39830 1.22266 0.99717 0.90887 0.89768 1.22029 1.01347 0.98137 0.95026 1.21406 0.98634 0.94475 0.96720 0.90970 1.20739 0.95315 0.93085 0.87509 1.42725 1.67341 1.20080 1.09958 1.19062 1.29351 1.03826 0.84984 0.89291 1.24680 1.00668 0.98294 0.95630 1.69701 1.45932 1.37192 1.05480 0.86559 0.78572 0.85299 0.78176 1.21082 1.21736 1.20359 1.21445 1.00402 0.95493 0.94263 0.90602 1.21840 0.99532 0.96346 1.02834 1.21762 0.96750 0.84061 0.97824 1.22524 0.91217 0.93796 0.88364 1.67406 1.40346 0.98580 1.20222 0.88378 0.92039 0.91917 0.83274 0.83215 0.90904 0.89442 0.91218 0.89945 0.95671 0.94935 0.80778 0.93072 0.92503 0.91137 0.92814 0.88892 0.91285 0.81375 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.26 10.37 101.05 1.05 1.31 16 2 O -0.30 -2.87 10.46 -18.19 -0.19 -3.06 16 3 C 0.34 3.45 7.49 -16.96 -0.13 3.32 16 4 C -0.19 -1.66 10.02 -39.34 -0.39 -2.06 16 5 C -0.01 -0.09 7.50 -38.91 -0.29 -0.38 16 6 C -0.22 -2.32 5.10 -104.82 -0.53 -2.85 16 7 C 0.57 7.02 7.32 -12.43 -0.09 6.93 16 8 O -0.54 -8.22 16.37 5.30 0.09 -8.13 16 9 N -0.60 -6.71 2.97 -173.70 -0.52 -7.22 16 10 C 0.10 0.97 4.98 -3.49 -0.02 0.95 16 11 C -0.13 -1.64 5.26 -26.39 -0.14 -1.78 16 12 C -0.09 -1.29 1.73 -90.58 -0.16 -1.45 16 13 H 0.07 1.00 8.14 -51.92 -0.42 0.58 16 14 C 0.16 2.93 5.41 -4.04 -0.02 2.91 16 15 N -0.76 -17.23 5.12 -59.90 -0.31 -17.53 16 16 C -0.24 -6.75 10.47 -15.06 -0.16 -6.91 16 17 H 0.09 2.68 8.06 -52.49 -0.42 2.25 16 18 C 0.00 0.08 5.50 -17.43 -0.10 -0.01 16 19 N -0.93 -29.19 13.97 55.49 0.78 -28.42 16 20 Si 0.88 21.55 27.74 -169.99 -4.71 16.83 16 21 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 22 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 23 H -0.28 -6.26 6.52 56.52 0.37 -5.89 16 24 C -0.10 -1.14 2.41 -90.50 -0.22 -1.36 16 25 H 0.08 0.97 8.14 -51.93 -0.42 0.54 16 26 C -0.15 -1.63 8.81 37.16 0.33 -1.30 16 27 C 0.12 1.30 5.72 -3.71 -0.02 1.28 16 28 C 0.20 2.10 10.81 -17.14 -0.19 1.92 16 29 N -0.54 -5.86 9.18 -12.97 -0.12 -5.98 16 30 H 0.10 0.42 8.14 -51.92 -0.42 0.00 16 31 H 0.06 0.41 8.10 -51.93 -0.42 -0.01 16 32 H 0.06 0.44 8.10 -51.93 -0.42 0.02 16 33 H 0.15 0.96 8.06 -52.49 -0.42 0.54 16 34 H 0.15 0.98 6.73 -52.49 -0.35 0.63 16 35 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.09 0.80 4.76 -51.93 -0.25 0.55 16 37 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 38 H 0.08 1.17 7.15 -51.93 -0.37 0.80 16 39 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 40 H 0.03 0.61 6.14 -51.93 -0.32 0.29 16 41 H 0.36 7.89 4.71 -40.82 -0.19 7.70 16 42 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 43 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 44 H 0.07 0.86 6.30 -51.93 -0.33 0.53 16 45 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 46 H 0.09 1.09 7.00 -51.93 -0.36 0.73 16 47 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 48 H 0.17 1.61 8.06 -52.49 -0.42 1.19 16 LS Contribution 380.22 15.07 5.73 5.73 Total: -1.00 -33.82 380.22 -7.59 -41.41 By element: Atomic # 1 Polarization: 13.12 SS G_CDS: -7.26 Total: 5.87 kcal Atomic # 6 Polarization: 1.58 SS G_CDS: -1.08 Total: 0.50 kcal Atomic # 7 Polarization: -58.98 SS G_CDS: -0.17 Total: -59.15 kcal Atomic # 8 Polarization: -11.09 SS G_CDS: -0.10 Total: -11.19 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -4.71 Total: 16.83 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -33.82 -7.59 -41.41 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001184770082.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.302 kcal (2) G-P(sol) polarization free energy of solvation -33.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.518 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.588 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.408 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.106 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds