Wall clock time and date at job start Tue Mar 31 2020 17:31:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.35498 * 116.99541 * 2 1 4 4 C 1.39169 * 119.52246 * 179.72816 * 3 2 1 5 5 C 1.37962 * 119.26027 * 179.78885 * 4 3 2 6 6 C 1.40289 * 118.35408 * 0.47505 * 5 4 3 7 7 C 1.47619 * 120.49411 * 179.72693 * 6 5 4 8 8 O 1.21577 * 119.99946 * 221.07978 * 7 6 5 9 9 N 1.34775 * 120.00064 * 41.07471 * 7 6 5 10 10 C 1.46929 * 120.63329 * 5.54650 * 9 7 6 11 11 C 1.53614 * 108.54541 * 126.36467 * 10 9 7 12 12 C 1.53037 * 109.24393 * 54.85625 * 11 10 9 13 13 H 1.09009 * 109.46068 * 58.53267 * 12 11 10 14 14 C 1.53000 * 109.46355 * 178.48789 * 12 11 10 15 15 N 1.46503 * 109.47283 * 295.07211 * 14 12 11 16 16 C 1.36930 * 119.99819 * 179.97438 * 15 14 12 17 17 H 1.08000 * 120.00227 * 0.02562 * 16 15 14 18 18 C 1.38815 * 119.99786 * 179.97438 * 16 15 14 19 19 N 1.31620 * 119.99847 * 180.02562 * 18 16 15 20 20 Si 1.86801 * 120.00117 * 359.97438 * 18 16 15 21 21 H 1.48499 * 109.46869 * 89.99956 * 20 18 16 22 22 H 1.48497 * 109.47283 * 210.00118 * 20 18 16 23 23 H 1.48497 * 109.47000 * 330.00367 * 20 18 16 24 24 C 1.53041 * 109.53788 * 298.51166 * 12 11 10 25 25 H 1.08992 * 109.52180 * 301.39437 * 24 12 11 26 26 C 1.53004 * 109.49509 * 181.31469 * 24 12 11 27 27 C 1.46930 * 120.62994 * 185.82057 * 9 7 6 28 28 C 1.39521 * 119.00786 * 359.74557 * 6 5 4 29 29 N 1.31668 * 120.62276 * 0.02562 * 28 6 5 30 30 H 1.09008 * 109.46594 * 180.02562 * 1 2 3 31 31 H 1.08990 * 109.47148 * 299.99591 * 1 2 3 32 32 H 1.09000 * 109.47112 * 60.00714 * 1 2 3 33 33 H 1.07995 * 120.37101 * 0.02562 * 4 3 2 34 34 H 1.07993 * 120.82053 * 180.21722 * 5 4 3 35 35 H 1.08998 * 109.58569 * 246.20139 * 10 9 7 36 36 H 1.08999 * 109.58238 * 6.61975 * 10 9 7 37 37 H 1.09001 * 109.63758 * 294.86265 * 11 10 9 38 38 H 1.09006 * 109.46032 * 174.74048 * 11 10 9 39 39 H 1.09004 * 109.47019 * 55.07272 * 14 12 11 40 40 H 1.09004 * 109.47343 * 175.07057 * 14 12 11 41 41 H 0.96997 * 119.99595 * 359.97438 * 15 14 12 42 42 H 0.97001 * 120.00142 * 180.02562 * 19 18 16 43 43 H 1.08999 * 109.46960 * 300.15826 * 26 24 12 44 44 H 1.08992 * 109.47263 * 60.16182 * 26 24 12 45 45 H 1.09005 * 109.46711 * 180.16266 * 26 24 12 46 46 H 1.09002 * 109.58707 * 353.37985 * 27 9 7 47 47 H 1.09005 * 109.58477 * 113.80263 * 27 9 7 48 48 H 1.07992 * 119.68573 * 180.02562 * 28 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0441 1.2073 0.0000 4 6 3.4344 1.2687 0.0057 5 6 4.0551 2.5008 0.0013 6 6 3.2522 3.6513 0.0013 7 6 3.8665 4.9935 0.0027 8 8 3.3973 5.8761 0.6947 9 7 4.9478 5.2406 -0.7631 10 6 5.4535 4.2232 -1.6948 11 6 5.5562 4.8497 -3.0936 12 6 6.4145 6.1145 -3.0181 13 1 7.4028 5.8603 -2.6346 14 6 6.5513 6.7219 -4.4157 15 7 7.2930 5.7993 -5.2788 16 6 7.5393 6.1313 -6.5842 17 1 7.1872 7.0736 -6.9774 18 6 8.2425 5.2573 -7.4019 19 7 8.4797 5.5767 -8.6565 20 14 8.8533 3.6285 -6.7212 21 1 7.8139 2.5871 -6.9221 22 1 10.0961 3.2307 -7.4299 23 1 9.1354 3.7729 -5.2704 24 6 5.7505 7.1287 -2.0841 25 1 4.7527 7.3651 -2.4534 26 6 6.5925 8.4052 -2.0349 27 6 5.6467 6.5301 -0.6778 28 6 1.8644 3.5078 0.0003 29 7 1.3138 2.3117 0.0000 30 1 -0.3633 -1.0278 0.0005 31 1 -0.3633 0.5137 0.8899 32 1 -0.3633 0.5137 -0.8900 33 1 4.0210 0.3620 0.0098 34 1 5.1322 2.5778 0.0020 35 1 6.4377 3.8865 -1.3691 36 1 4.7660 3.3778 -1.7210 37 1 4.5601 5.1070 -3.4537 38 1 6.0175 4.1373 -3.7776 39 1 5.5603 6.8948 -4.8353 40 1 7.0880 7.6684 -4.3496 41 1 7.6095 4.9532 -4.9255 42 1 8.9707 4.9659 -9.2280 43 1 7.5906 8.1681 -1.6666 44 1 6.6661 8.8307 -3.0356 45 1 6.1207 9.1262 -1.3672 46 1 5.0867 7.2073 -0.0328 47 1 6.6464 6.3777 -0.2708 48 1 1.2359 4.3860 -0.0001 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001184770082.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:31:58 Heat of formation + Delta-G solvation = -42.925127 kcal Electronic energy + Delta-G solvation = -28900.294660 eV Core-core repulsion = 24955.124126 eV Total energy + Delta-G solvation = -3945.170534 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 1.46 seconds Orbital eigenvalues (eV) -42.12773 -41.06209 -39.41750 -38.62082 -36.72150 -35.22296 -33.84161 -33.39242 -32.32936 -32.01067 -28.75647 -28.36463 -27.77779 -25.66099 -24.73345 -24.47110 -23.54400 -22.68435 -21.42355 -20.55229 -19.61952 -19.50464 -18.53175 -17.99957 -17.33081 -17.05429 -16.67094 -16.33865 -15.94013 -15.72328 -15.64557 -15.46960 -15.21997 -15.00619 -14.76256 -14.55868 -14.43246 -14.29616 -14.06034 -13.87474 -13.68936 -13.24743 -13.11653 -12.92430 -12.81709 -12.79465 -12.68808 -12.22832 -12.15578 -11.98681 -11.83949 -11.63907 -11.54514 -11.27363 -11.22774 -10.97622 -10.88231 -10.68016 -9.79863 -9.56873 -9.25771 -8.00850 -5.34430 -0.30915 0.07650 1.38671 1.44391 1.51895 1.56829 1.87898 2.03768 2.51042 2.61929 3.13279 3.30533 3.35828 3.54710 3.68330 3.76420 3.82029 3.92814 3.98076 3.99377 4.07990 4.29579 4.38692 4.40541 4.41349 4.49641 4.59817 4.61707 4.66801 4.69646 4.74379 4.76751 4.80772 4.84374 4.92543 4.99526 5.08337 5.10817 5.18703 5.22580 5.27093 5.37024 5.48891 5.59187 5.77656 6.06507 6.22860 6.27661 6.62831 7.00437 7.10494 7.86044 8.07255 9.21065 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.011448 B = 0.003087 C = 0.002568 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2445.274015 B = 9068.993792 C =10898.780273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.312 6.312 3 C 0.324 3.676 4 C -0.189 4.189 5 C -0.002 4.002 6 C -0.230 4.230 7 C 0.572 3.428 8 O -0.575 6.575 9 N -0.599 5.599 10 C 0.102 3.898 11 C -0.127 4.127 12 C -0.082 4.082 13 H 0.084 0.916 14 C 0.158 3.842 15 N -0.754 5.754 16 C -0.235 4.235 17 H 0.050 0.950 18 C -0.069 4.069 19 N -0.988 5.988 20 Si 0.958 3.042 21 H -0.276 1.276 22 H -0.298 1.298 23 H -0.242 1.242 24 C -0.088 4.088 25 H 0.061 0.939 26 C -0.146 4.146 27 C 0.122 3.878 28 C 0.187 3.813 29 N -0.556 5.556 30 H 0.125 0.875 31 H 0.058 0.942 32 H 0.056 0.944 33 H 0.175 0.825 34 H 0.177 0.823 35 H 0.102 0.898 36 H 0.101 0.899 37 H 0.055 0.945 38 H 0.074 0.926 39 H 0.011 0.989 40 H 0.030 0.970 41 H 0.368 0.632 42 H 0.257 0.743 43 H 0.066 0.934 44 H 0.052 0.948 45 H 0.067 0.933 46 H 0.085 0.915 47 H 0.091 0.909 48 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.758 -10.138 24.222 28.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.218 6.218 3 C 0.145 3.855 4 C -0.209 4.209 5 C -0.027 4.027 6 C -0.236 4.236 7 C 0.361 3.639 8 O -0.456 6.456 9 N -0.330 5.330 10 C -0.020 4.020 11 C -0.165 4.165 12 C -0.101 4.101 13 H 0.102 0.898 14 C 0.032 3.968 15 N -0.400 5.400 16 C -0.366 4.366 17 H 0.068 0.932 18 C -0.260 4.260 19 N -0.638 5.638 20 Si 0.784 3.216 21 H -0.202 1.202 22 H -0.225 1.225 23 H -0.167 1.167 24 C -0.108 4.108 25 H 0.080 0.920 26 C -0.203 4.203 27 C 0.000 4.000 28 C 0.030 3.970 29 N -0.280 5.280 30 H 0.143 0.857 31 H 0.077 0.923 32 H 0.075 0.925 33 H 0.192 0.808 34 H 0.194 0.806 35 H 0.120 0.880 36 H 0.119 0.881 37 H 0.073 0.927 38 H 0.092 0.908 39 H 0.029 0.971 40 H 0.048 0.952 41 H 0.202 0.798 42 H 0.066 0.934 43 H 0.085 0.915 44 H 0.071 0.929 45 H 0.086 0.914 46 H 0.104 0.896 47 H 0.109 0.891 48 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -11.824 -9.908 24.413 28.878 hybrid contribution 0.817 -0.287 -0.685 1.104 sum -11.008 -10.194 23.728 28.073 Atomic orbital electron populations 1.23115 0.75609 1.04911 1.02405 1.86217 1.24565 1.24142 1.86864 1.20475 0.90447 0.84834 0.89704 1.21328 0.91401 1.00571 1.07626 1.21937 1.01845 0.89463 0.89482 1.20660 0.95786 0.94143 1.12963 1.18171 0.79442 0.87189 0.79141 1.90769 1.63065 1.47499 1.44227 1.48077 1.28512 1.16881 1.39508 1.22344 1.01577 0.90503 0.87572 1.21990 1.00154 0.97518 0.96878 1.21301 0.99752 0.95177 0.93892 0.89809 1.20880 0.93719 0.92684 0.89502 1.42664 1.67617 1.21126 1.08565 1.19017 1.28190 1.02217 0.87187 0.93234 1.25599 1.01526 1.02958 0.95878 1.69908 1.47525 1.39009 1.07406 0.85366 0.77455 0.79570 0.79189 1.20155 1.22542 1.16653 1.21344 0.99534 0.95423 0.94488 0.92030 1.21812 1.00121 0.96203 1.02196 1.21745 0.97694 0.83956 0.96645 1.22573 0.91660 0.93886 0.88899 1.67376 1.40958 0.98856 1.20841 0.85728 0.92289 0.92488 0.80765 0.80575 0.88043 0.88124 0.92655 0.90767 0.97100 0.95221 0.79811 0.93389 0.91462 0.92886 0.91399 0.89630 0.89122 0.81523 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.42 10.37 113.37 1.18 1.60 16 2 O -0.31 -5.35 10.46 -87.99 -0.92 -6.27 16 3 C 0.32 6.04 7.49 84.83 0.64 6.67 16 4 C -0.19 -2.65 10.02 22.43 0.22 -2.42 16 5 C 0.00 -0.03 7.50 22.70 0.17 0.14 16 6 C -0.23 -4.43 5.10 -19.99 -0.10 -4.53 16 7 C 0.57 13.12 7.32 86.72 0.64 13.75 16 8 O -0.57 -17.19 16.37 -3.96 -0.06 -17.25 16 9 N -0.60 -11.73 2.97 -821.73 -2.44 -14.17 16 10 C 0.10 1.67 4.98 86.50 0.43 2.10 16 11 C -0.13 -2.97 5.26 30.81 0.16 -2.81 16 12 C -0.08 -2.10 1.73 -10.77 -0.02 -2.12 16 13 H 0.08 2.01 8.14 -2.38 -0.02 1.99 16 14 C 0.16 5.71 5.41 86.38 0.47 6.17 16 15 N -0.75 -33.66 5.12 -343.44 -1.76 -35.41 16 16 C -0.24 -13.31 10.47 84.04 0.88 -12.43 16 17 H 0.05 3.13 8.06 -2.91 -0.02 3.10 16 18 C -0.07 -4.00 5.50 84.86 0.47 -3.53 16 19 N -0.99 -63.28 13.97 21.65 0.30 -62.98 16 20 Si 0.96 43.66 27.74 68.60 1.90 45.57 16 21 H -0.28 -12.14 7.11 99.48 0.71 -11.43 16 22 H -0.30 -13.95 7.11 99.48 0.71 -13.24 16 23 H -0.24 -9.56 6.52 99.48 0.65 -8.91 16 24 C -0.09 -1.93 2.41 -10.71 -0.03 -1.96 16 25 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 26 C -0.15 -2.98 8.81 71.98 0.63 -2.34 16 27 C 0.12 2.35 5.72 86.36 0.49 2.85 16 28 C 0.19 3.86 10.81 85.03 0.92 4.78 16 29 N -0.56 -11.61 9.18 -307.83 -2.82 -14.43 16 30 H 0.12 0.81 8.14 -2.38 -0.02 0.79 16 31 H 0.06 0.75 8.10 -2.39 -0.02 0.73 16 32 H 0.06 0.76 8.10 -2.39 -0.02 0.74 16 33 H 0.17 1.52 8.06 -2.91 -0.02 1.50 16 34 H 0.18 1.43 6.73 -2.91 -0.02 1.41 16 35 H 0.10 1.19 8.14 -2.39 -0.02 1.17 16 36 H 0.10 1.44 4.76 -2.39 -0.01 1.43 16 37 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 38 H 0.07 1.89 7.15 -2.38 -0.02 1.87 16 39 H 0.01 0.43 8.14 -2.39 -0.02 0.41 16 40 H 0.03 1.11 6.14 -2.38 -0.01 1.09 16 41 H 0.37 15.15 4.71 -92.71 -0.44 14.71 16 42 H 0.26 15.66 8.31 -92.71 -0.77 14.89 16 43 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 44 H 0.05 1.27 6.30 -2.39 -0.02 1.25 16 45 H 0.07 1.20 8.14 -2.38 -0.02 1.18 16 46 H 0.09 1.85 7.00 -2.39 -0.02 1.84 16 47 H 0.09 1.42 8.14 -2.38 -0.02 1.40 16 48 H 0.17 3.29 8.06 -2.91 -0.02 3.27 16 Total: -1.00 -75.49 380.22 1.83 -73.66 By element: Atomic # 1 Polarization: 24.89 SS G_CDS: 0.48 Total: 25.36 kcal Atomic # 6 Polarization: -1.22 SS G_CDS: 7.15 Total: 5.93 kcal Atomic # 7 Polarization: -120.27 SS G_CDS: -6.72 Total: -126.99 kcal Atomic # 8 Polarization: -22.54 SS G_CDS: -0.99 Total: -23.53 kcal Atomic # 14 Polarization: 43.66 SS G_CDS: 1.90 Total: 45.57 kcal Total: -75.49 1.83 -73.66 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001184770082.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.735 kcal (2) G-P(sol) polarization free energy of solvation -75.486 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.751 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.826 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.660 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.925 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.46 seconds