Wall clock time and date at job start Tue Mar 31 2020 17:32:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35503 * 116.99962 * 2 1 4 4 C 1.39168 * 119.52664 * 179.97438 * 3 2 1 5 5 C 1.37958 * 119.26166 * 180.02562 * 4 3 2 6 6 C 1.40282 * 118.35539 * 0.02562 * 5 4 3 7 7 C 1.47616 * 120.49474 * 179.97438 * 6 5 4 8 8 O 1.21582 * 120.00101 * 50.78792 * 7 6 5 9 9 N 1.34777 * 120.00182 * 230.79403 * 7 6 5 10 10 C 1.46924 * 120.62830 * 356.14925 * 9 7 6 11 11 C 1.53189 * 108.77626 * 126.41468 * 10 9 7 12 12 C 1.53038 * 109.31299 * 54.63421 * 11 10 9 13 13 H 1.09002 * 109.45208 * 58.64977 * 12 11 10 14 14 C 1.52996 * 109.46292 * 178.61624 * 12 11 10 15 15 N 1.46508 * 109.47152 * 295.07038 * 14 12 11 16 16 C 1.36938 * 120.00096 * 180.27862 * 15 14 12 17 17 H 1.07995 * 119.99924 * 359.71510 * 16 15 14 18 18 C 1.38813 * 119.99760 * 179.72473 * 16 15 14 19 19 N 1.31615 * 120.00004 * 359.97438 * 18 16 15 20 20 Si 1.86798 * 119.99817 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.47140 * 59.99595 * 20 18 16 22 22 H 1.48494 * 109.47427 * 179.97438 * 20 18 16 23 23 H 1.48502 * 109.47252 * 300.00173 * 20 18 16 24 24 C 1.53041 * 109.53961 * 298.63742 * 12 11 10 25 25 H 1.08998 * 109.49832 * 181.32044 * 24 12 11 26 26 C 1.53005 * 109.49407 * 301.41108 * 24 12 11 27 27 C 1.46921 * 120.63205 * 176.17269 * 9 7 6 28 28 C 1.39514 * 119.00592 * 0.25281 * 6 5 4 29 29 N 1.31669 * 120.62755 * 359.47261 * 28 6 5 30 30 H 1.09004 * 109.47396 * 60.00393 * 1 2 3 31 31 H 1.09003 * 109.47209 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.47639 * 300.00203 * 1 2 3 33 33 H 1.08001 * 120.36925 * 0.04474 * 4 3 2 34 34 H 1.07993 * 120.81933 * 180.02562 * 5 4 3 35 35 H 1.09000 * 109.58805 * 246.20244 * 10 9 7 36 36 H 1.09000 * 109.58937 * 6.62524 * 10 9 7 37 37 H 1.09006 * 109.49734 * 294.68354 * 11 10 9 38 38 H 1.09002 * 109.50291 * 174.58827 * 11 10 9 39 39 H 1.08995 * 109.47643 * 175.07073 * 14 12 11 40 40 H 1.08998 * 109.47227 * 55.06468 * 14 12 11 41 41 H 0.97002 * 119.99454 * 359.97438 * 15 14 12 42 42 H 0.97000 * 119.99950 * 179.97438 * 19 18 16 43 43 H 1.08999 * 109.46933 * 60.00226 * 26 24 12 44 44 H 1.09009 * 109.46805 * 179.97438 * 26 24 12 45 45 H 1.08995 * 109.47318 * 299.99886 * 26 24 12 46 46 H 1.08999 * 109.58576 * 113.79916 * 27 9 7 47 47 H 1.08997 * 109.70535 * 353.44200 * 27 9 7 48 48 H 1.08005 * 119.68272 * 179.75068 * 28 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0441 1.2073 0.0000 4 6 3.4344 1.2687 0.0005 5 6 4.0551 2.5008 0.0011 6 6 3.2522 3.6512 0.0016 7 6 3.8666 4.9934 0.0028 8 8 4.7252 5.2697 -0.8126 9 7 3.4760 5.9126 0.9077 10 6 2.3818 5.6229 1.8445 11 6 2.8737 5.8811 3.2721 12 6 3.4226 7.3064 3.3683 13 1 2.6407 8.0156 3.0968 14 6 3.8832 7.5796 4.8015 15 7 2.7270 7.5464 5.7007 16 6 2.8954 7.7706 7.0411 17 1 3.8811 7.9674 7.4360 18 6 1.7991 7.7448 7.8922 19 7 0.5978 7.5053 7.4108 20 14 2.0289 8.0500 9.7207 21 1 2.6122 9.3998 9.9278 22 1 0.7136 7.9693 10.4052 23 1 2.9436 7.0240 10.2827 24 6 4.6079 7.4639 2.4132 25 1 5.0131 8.4721 2.4993 26 6 5.6916 6.4450 2.7718 27 6 4.1357 7.2236 0.9758 28 6 1.8645 3.5077 0.0070 29 7 1.3138 2.3117 0.0010 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3634 0.5139 0.8900 33 1 4.0210 0.3619 0.0002 34 1 5.1323 2.5777 0.0011 35 1 1.5334 6.2718 1.6274 36 1 2.0817 4.5798 1.7444 37 1 3.6621 5.1701 3.5195 38 1 2.0445 5.7627 3.9697 39 1 4.3538 8.5614 4.8511 40 1 4.6008 6.8170 5.1042 41 1 1.8416 7.3699 5.3459 42 1 -0.1682 7.4868 8.0056 43 1 5.2860 5.4372 2.6839 44 1 6.5355 6.5573 2.0909 45 1 6.0252 6.6145 3.7955 46 1 3.4303 8.0031 0.6878 47 1 4.9926 7.2393 0.3023 48 1 1.2360 4.3860 0.0115 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001184770087.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:32:06 Heat of formation + Delta-G solvation = -20.818356 kcal Electronic energy + Delta-G solvation = -29124.067951 eV Core-core repulsion = 25179.856038 eV Total energy + Delta-G solvation = -3944.211913 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.29370 -40.19003 -38.43092 -37.70235 -35.01394 -33.53227 -32.91322 -31.95399 -31.03354 -30.34347 -27.85845 -27.06508 -26.66061 -24.53063 -23.75838 -23.38328 -22.91998 -21.48025 -20.29378 -18.80681 -18.44201 -17.91299 -17.26841 -16.97658 -16.39408 -16.05282 -15.47754 -15.10979 -14.87547 -14.62611 -14.56899 -14.20947 -14.01753 -13.76531 -13.62121 -13.57081 -13.39041 -13.02006 -12.88727 -12.52875 -12.42539 -12.21429 -12.18600 -11.63229 -11.55664 -11.32028 -11.05728 -10.93834 -10.77378 -10.51648 -10.36407 -10.29513 -10.22151 -10.11517 -9.98314 -9.76213 -9.64625 -8.87691 -8.83539 -8.61956 -6.91803 -5.77731 -3.05633 0.55095 0.85380 2.50290 2.70170 2.87896 3.41388 3.43161 3.47764 3.48534 3.87599 4.25470 4.47298 4.57805 4.70752 4.73734 4.79425 4.92399 4.98029 4.99185 5.02391 5.11376 5.22399 5.27624 5.30829 5.42520 5.46184 5.52500 5.59328 5.68060 5.73910 5.77349 5.82421 5.86408 5.95503 6.03870 6.07027 6.18358 6.27428 6.35798 6.44869 6.45859 6.64542 6.79904 6.81617 6.92845 7.27330 7.40324 7.68930 8.00010 8.41755 9.52838 10.11136 10.45679 11.45173 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.011660 B = 0.002973 C = 0.002512 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2400.696296 B = 9415.368428 C =11141.671884 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.305 6.305 3 C 0.336 3.664 4 C -0.192 4.192 5 C 0.007 3.993 6 C -0.216 4.216 7 C 0.570 3.430 8 O -0.540 6.540 9 N -0.596 5.596 10 C 0.096 3.904 11 C -0.127 4.127 12 C -0.089 4.089 13 H 0.072 0.928 14 C 0.158 3.842 15 N -0.732 5.732 16 C -0.239 4.239 17 H 0.068 0.932 18 C -0.014 4.014 19 N -0.934 5.934 20 Si 0.906 3.094 21 H -0.286 1.286 22 H -0.291 1.291 23 H -0.286 1.286 24 C -0.099 4.099 25 H 0.083 0.917 26 C -0.145 4.145 27 C 0.118 3.882 28 C 0.176 3.824 29 N -0.539 5.539 30 H 0.060 0.940 31 H 0.097 0.903 32 H 0.063 0.937 33 H 0.149 0.851 34 H 0.149 0.851 35 H 0.075 0.925 36 H 0.084 0.916 37 H 0.068 0.932 38 H 0.088 0.912 39 H 0.017 0.983 40 H 0.021 0.979 41 H 0.383 0.617 42 H 0.255 0.745 43 H 0.054 0.946 44 H 0.048 0.952 45 H 0.062 0.938 46 H 0.069 0.931 47 H 0.091 0.909 48 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.289 -11.067 -18.181 21.537 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.211 6.211 3 C 0.157 3.843 4 C -0.213 4.213 5 C -0.018 4.018 6 C -0.221 4.221 7 C 0.357 3.643 8 O -0.418 6.418 9 N -0.328 5.328 10 C -0.026 4.026 11 C -0.165 4.165 12 C -0.107 4.107 13 H 0.090 0.910 14 C 0.031 3.969 15 N -0.376 5.376 16 C -0.370 4.370 17 H 0.086 0.914 18 C -0.210 4.210 19 N -0.583 5.583 20 Si 0.737 3.263 21 H -0.213 1.213 22 H -0.217 1.217 23 H -0.213 1.213 24 C -0.118 4.118 25 H 0.101 0.899 26 C -0.202 4.202 27 C -0.004 4.004 28 C 0.018 3.982 29 N -0.263 5.263 30 H 0.079 0.921 31 H 0.116 0.884 32 H 0.082 0.918 33 H 0.166 0.834 34 H 0.166 0.834 35 H 0.093 0.907 36 H 0.102 0.898 37 H 0.086 0.914 38 H 0.106 0.894 39 H 0.035 0.965 40 H 0.039 0.961 41 H 0.217 0.783 42 H 0.065 0.935 43 H 0.073 0.927 44 H 0.067 0.933 45 H 0.081 0.919 46 H 0.087 0.913 47 H 0.110 0.890 48 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges 2.997 -11.254 -18.445 21.814 hybrid contribution 0.271 0.317 1.104 1.180 sum 3.268 -10.937 -17.341 20.761 Atomic orbital electron populations 1.22936 0.76707 1.03218 1.02869 1.86212 1.23384 1.24427 1.87083 1.20061 0.89477 0.84767 0.89959 1.21005 0.91901 0.99525 1.08872 1.21380 1.00759 0.89756 0.89939 1.20734 0.95379 0.94845 1.11176 1.17939 0.81906 0.83609 0.80830 1.90783 1.32722 1.79873 1.38421 1.48031 1.35722 1.15203 1.33878 1.22158 0.88916 1.01758 0.89788 1.21961 1.02324 0.97484 0.94688 1.21310 0.96751 0.96593 0.96091 0.90959 1.20710 0.91171 0.97495 0.87531 1.42374 1.04965 1.86125 1.04160 1.19180 0.93479 1.40348 0.83973 0.91361 1.24714 0.95377 1.02847 0.98018 1.69636 0.97999 1.56400 1.34280 0.86282 0.76550 0.78022 0.85425 1.21321 1.21696 1.21315 1.21480 0.96361 1.00248 0.93722 0.89881 1.21866 0.97590 0.99180 1.01606 1.21718 0.98038 0.83071 0.97592 1.22669 0.91354 0.94081 0.90067 1.67347 1.40401 0.98547 1.19974 0.92078 0.88438 0.91815 0.83356 0.83368 0.90660 0.89767 0.91363 0.89357 0.96491 0.96110 0.78315 0.93507 0.92679 0.93305 0.91888 0.91267 0.89044 0.81580 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.28 10.37 101.05 1.05 1.33 16 2 O -0.30 -3.07 10.46 -18.20 -0.19 -3.26 16 3 C 0.34 3.64 7.49 -16.96 -0.13 3.51 16 4 C -0.19 -1.82 10.02 -39.34 -0.39 -2.22 16 5 C 0.01 0.07 9.89 -38.92 -0.38 -0.31 16 6 C -0.22 -2.42 5.02 -104.83 -0.53 -2.95 16 7 C 0.57 7.33 7.25 -12.43 -0.09 7.24 16 8 O -0.54 -8.52 16.49 5.29 0.09 -8.43 16 9 N -0.60 -7.04 2.41 -173.97 -0.42 -7.46 16 10 C 0.10 1.09 5.38 -3.71 -0.02 1.07 16 11 C -0.13 -1.78 4.91 -26.61 -0.13 -1.91 16 12 C -0.09 -1.31 1.96 -90.58 -0.18 -1.49 16 13 H 0.07 1.11 8.14 -51.93 -0.42 0.68 16 14 C 0.16 3.04 5.19 -4.04 -0.02 3.02 16 15 N -0.73 -17.87 5.32 -59.91 -0.32 -18.19 16 16 C -0.24 -6.58 9.99 -15.06 -0.15 -6.73 16 17 H 0.07 1.84 7.83 -52.49 -0.41 1.43 16 18 C -0.01 -0.39 5.50 -17.43 -0.10 -0.48 16 19 N -0.93 -27.71 13.06 55.49 0.72 -26.99 16 20 Si 0.91 22.23 29.55 -169.99 -5.02 17.20 16 21 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 22 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 23 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 24 C -0.10 -1.22 2.72 -90.50 -0.25 -1.46 16 25 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 26 C -0.15 -1.82 8.38 37.16 0.31 -1.51 16 27 C 0.12 1.37 5.81 -3.71 -0.02 1.35 16 28 C 0.18 1.85 8.53 -17.15 -0.15 1.70 16 29 N -0.54 -6.04 9.18 -12.97 -0.12 -6.15 16 30 H 0.06 0.45 8.10 -51.93 -0.42 0.03 16 31 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.06 0.50 8.10 -51.93 -0.42 0.08 16 33 H 0.15 1.07 8.06 -52.49 -0.42 0.65 16 34 H 0.15 1.29 8.06 -52.49 -0.42 0.86 16 35 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.08 0.90 4.54 -51.93 -0.24 0.66 16 37 H 0.07 1.00 6.34 -51.93 -0.33 0.67 16 38 H 0.09 1.45 7.15 -51.93 -0.37 1.08 16 39 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 40 H 0.02 0.41 6.74 -51.93 -0.35 0.06 16 41 H 0.38 9.71 6.84 -40.82 -0.28 9.43 16 42 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 43 H 0.05 0.72 5.97 -51.93 -0.31 0.41 16 44 H 0.05 0.57 8.14 -51.92 -0.42 0.15 16 45 H 0.06 0.83 6.58 -51.93 -0.34 0.49 16 46 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 47 H 0.09 1.12 7.03 -51.93 -0.37 0.75 16 48 H 0.17 1.46 7.05 -52.48 -0.37 1.09 16 LS Contribution 379.89 15.07 5.72 5.72 Total: -1.00 -32.65 379.89 -7.85 -40.50 By element: Atomic # 1 Polarization: 14.06 SS G_CDS: -7.14 Total: 6.91 kcal Atomic # 6 Polarization: 1.30 SS G_CDS: -1.17 Total: 0.13 kcal Atomic # 7 Polarization: -58.66 SS G_CDS: -0.13 Total: -58.79 kcal Atomic # 8 Polarization: -11.58 SS G_CDS: -0.10 Total: -11.68 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -5.02 Total: 17.20 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -32.65 -7.85 -40.50 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001184770087.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.685 kcal (2) G-P(sol) polarization free energy of solvation -32.653 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.968 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.851 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.504 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.818 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds