Wall clock time and date at job start Tue Mar 31 2020 17:33:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.52415 * 2 1 4 4 C 1.53196 * 109.50058 * 120.08491 * 2 1 3 5 5 N 1.46929 * 108.77487 * 65.31762 * 4 2 1 6 6 C 1.34777 * 120.62628 * 233.63503 * 5 4 2 7 7 O 1.21618 * 120.00001 * 355.70638 * 6 5 4 8 8 C 1.47289 * 119.99787 * 175.70775 * 6 5 4 9 9 C 1.37993 * 120.88161 * 53.94653 * 8 6 5 10 10 N 1.34342 * 120.37127 * 179.97438 * 9 8 6 11 11 C 1.46501 * 118.80323 * 180.02562 * 10 9 8 12 12 C 1.35585 * 122.39064 * 0.04250 * 10 9 8 13 13 C 1.34864 * 121.80042 * 359.95156 * 12 10 9 14 14 C 1.41674 * 119.33853 * 359.76345 * 13 12 10 15 15 O 1.22080 * 121.07127 * 180.25448 * 14 13 12 16 16 C 1.46919 * 118.73821 * 53.60804 * 5 4 2 17 17 C 1.53189 * 108.77949 * 306.38997 * 16 5 4 18 18 C 1.53041 * 109.49850 * 239.92284 * 2 1 3 19 19 H 1.09007 * 109.46234 * 181.39084 * 18 2 1 20 20 C 1.52999 * 109.45186 * 61.42493 * 18 2 1 21 21 N 1.46499 * 109.47538 * 174.96403 * 20 18 2 22 22 C 1.36933 * 120.00062 * 180.02562 * 21 20 18 23 23 H 1.08002 * 120.00060 * 359.97438 * 22 21 20 24 24 C 1.38814 * 120.00001 * 180.02562 * 22 21 20 25 25 N 1.31617 * 119.99797 * 359.97438 * 24 22 21 26 26 Si 1.86801 * 120.00099 * 179.97438 * 24 22 21 27 27 H 1.48502 * 109.46996 * 0.02562 * 26 24 22 28 28 H 1.48497 * 109.46694 * 119.99766 * 26 24 22 29 29 H 1.48498 * 109.47248 * 240.00277 * 26 24 22 30 30 H 1.09005 * 109.46730 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.46691 * 300.07528 * 1 2 3 32 32 H 1.08997 * 109.46919 * 60.08174 * 1 2 3 33 33 H 1.09001 * 109.58280 * 305.53322 * 4 2 1 34 34 H 1.09003 * 109.58852 * 185.10460 * 4 2 1 35 35 H 1.08002 * 119.81121 * 359.96949 * 9 8 6 36 36 H 1.09003 * 109.46974 * 89.99996 * 11 10 9 37 37 H 1.09003 * 109.46780 * 209.99842 * 11 10 9 38 38 H 1.08996 * 109.47228 * 329.99595 * 11 10 9 39 39 H 1.07998 * 119.10516 * 179.97438 * 12 10 9 40 40 H 1.07993 * 120.33185 * 180.02562 * 13 12 10 41 41 H 1.09008 * 109.58318 * 186.60488 * 16 5 4 42 42 H 1.09003 * 109.70366 * 66.25180 * 16 5 4 43 43 H 1.08997 * 109.50132 * 294.68959 * 17 16 5 44 44 H 1.08999 * 109.52475 * 174.60166 * 17 16 5 45 45 H 1.09001 * 109.47164 * 294.97352 * 20 18 2 46 46 H 1.09006 * 109.46960 * 54.96560 * 20 18 2 47 47 H 0.96997 * 119.99503 * 0.02562 * 21 20 18 48 48 H 0.97000 * 119.99737 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0414 -0.7239 1.2495 5 7 1.6516 -2.1383 1.1694 6 6 0.9741 -2.7220 2.1777 7 8 0.7477 -2.1003 3.1982 8 6 0.5078 -4.1127 2.0437 9 6 1.3854 -5.1252 1.7138 10 7 0.9491 -6.3902 1.5948 11 6 1.9106 -7.4384 1.2437 12 6 -0.3487 -6.7321 1.7874 13 6 -1.2840 -5.8166 2.1129 14 6 -0.9046 -4.4600 2.2638 15 8 -1.7242 -3.6059 2.5623 16 6 2.0141 -2.9040 -0.0309 17 6 1.5030 -2.1558 -1.2661 18 6 2.0408 -0.7230 -1.2484 19 1 3.1306 -0.7443 -1.2354 20 6 1.5604 0.0172 -2.4983 21 7 2.1470 -0.6029 -3.6889 22 6 1.8587 -0.1063 -4.9320 23 1 1.1985 0.7422 -5.0348 24 6 2.4141 -0.6943 -6.0602 25 7 3.2183 -1.7287 -5.9349 26 14 2.0203 -0.0173 -7.7561 27 1 1.0991 1.1401 -7.6254 28 1 3.2753 0.4217 -8.4174 29 1 1.3738 -1.0752 -8.5735 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3632 0.5150 0.8893 32 1 -0.3633 0.5126 -0.8907 33 1 1.6007 -0.2733 2.1389 34 1 3.1276 -0.6464 1.2980 35 1 2.4288 -4.8994 1.5503 36 1 2.3393 -7.8578 2.1539 37 1 1.4028 -8.2248 0.6853 38 1 2.7048 -7.0124 0.6307 39 1 -0.6415 -7.7658 1.6775 40 1 -2.3111 -6.1153 2.2613 41 1 1.5554 -3.8919 0.0135 42 1 3.0978 -3.0065 -0.0882 43 1 0.4133 -2.1354 -1.2542 44 1 1.8476 -2.6625 -2.1675 45 1 0.4734 -0.0379 -2.5579 46 1 1.8687 1.0613 -2.4432 47 1 2.7396 -1.3652 -3.5965 48 1 3.6061 -2.1397 -6.7233 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001184799948.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:33:39 Heat of formation + Delta-G solvation = -16.100535 kcal Electronic energy + Delta-G solvation = -29595.100029 eV Core-core repulsion = 25651.092697 eV Total energy + Delta-G solvation = -3944.007333 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.41792 -40.00659 -38.24650 -37.55461 -34.90408 -33.62028 -32.80804 -32.19558 -31.44598 -30.28797 -27.54338 -26.97739 -26.62590 -24.80249 -23.51610 -23.33711 -22.72974 -21.44586 -20.24206 -18.47700 -18.01989 -17.63754 -17.22207 -16.95515 -16.28599 -15.93759 -15.56503 -15.20485 -14.92891 -14.68239 -14.26711 -14.03744 -13.98092 -13.83442 -13.68429 -13.49473 -13.33381 -13.05064 -12.86403 -12.69002 -12.51699 -12.40337 -12.22833 -12.09829 -11.46864 -11.31409 -11.02004 -10.90580 -10.74247 -10.31427 -10.20810 -10.13738 -10.07257 -9.94728 -9.75329 -9.62325 -9.37117 -8.85926 -8.50475 -8.17489 -6.89810 -5.77506 -3.04512 0.72702 1.04968 2.03870 2.71986 3.08452 3.42711 3.49105 3.50891 3.57469 3.88403 4.10226 4.33497 4.40777 4.52898 4.59324 4.73667 4.83954 4.86119 4.95514 5.08396 5.10171 5.19065 5.29931 5.32257 5.45814 5.50397 5.55772 5.65625 5.84272 5.88643 5.91762 5.94420 6.07802 6.11040 6.16156 6.24319 6.30263 6.38270 6.44950 6.48236 6.54669 6.60220 6.72723 6.86140 7.00016 7.47973 7.71577 7.96038 8.29642 8.42457 9.53772 10.12457 10.47362 11.45795 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.013230 B = 0.003097 C = 0.002763 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2115.830847 B = 9039.448381 C =10130.380261 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.099 4.099 3 H 0.081 0.919 4 C 0.120 3.880 5 N -0.603 5.603 6 C 0.585 3.415 7 O -0.528 6.528 8 C -0.291 4.291 9 C 0.165 3.835 10 N -0.476 5.476 11 C 0.054 3.946 12 C 0.130 3.870 13 C -0.269 4.269 14 C 0.410 3.590 15 O -0.496 6.496 16 C 0.101 3.899 17 C -0.127 4.127 18 C -0.087 4.087 19 H 0.071 0.929 20 C 0.157 3.843 21 N -0.732 5.732 22 C -0.234 4.234 23 H 0.070 0.930 24 C -0.015 4.015 25 N -0.936 5.936 26 Si 0.905 3.095 27 H -0.280 1.280 28 H -0.292 1.292 29 H -0.292 1.292 30 H 0.056 0.944 31 H 0.048 0.952 32 H 0.060 0.940 33 H 0.090 0.910 34 H 0.066 0.934 35 H 0.169 0.831 36 H 0.080 0.920 37 H 0.093 0.907 38 H 0.094 0.906 39 H 0.165 0.835 40 H 0.154 0.846 41 H 0.078 0.922 42 H 0.070 0.930 43 H 0.069 0.931 44 H 0.086 0.914 45 H 0.022 0.978 46 H 0.018 0.982 47 H 0.382 0.618 48 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.166 -15.094 16.975 22.716 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.118 4.118 3 H 0.100 0.900 4 C -0.002 4.002 5 N -0.337 5.337 6 C 0.372 3.628 7 O -0.404 6.404 8 C -0.302 4.302 9 C 0.035 3.965 10 N -0.162 5.162 11 C -0.087 4.087 12 C 0.006 3.994 13 C -0.294 4.294 14 C 0.297 3.703 15 O -0.378 6.378 16 C -0.022 4.022 17 C -0.165 4.165 18 C -0.106 4.106 19 H 0.089 0.911 20 C 0.030 3.970 21 N -0.376 5.376 22 C -0.365 4.365 23 H 0.088 0.912 24 C -0.211 4.211 25 N -0.585 5.585 26 Si 0.736 3.264 27 H -0.206 1.206 28 H -0.219 1.219 29 H -0.219 1.219 30 H 0.075 0.925 31 H 0.068 0.932 32 H 0.079 0.921 33 H 0.109 0.891 34 H 0.085 0.915 35 H 0.186 0.814 36 H 0.099 0.901 37 H 0.112 0.888 38 H 0.112 0.888 39 H 0.182 0.818 40 H 0.171 0.829 41 H 0.096 0.904 42 H 0.088 0.912 43 H 0.087 0.913 44 H 0.104 0.896 45 H 0.040 0.960 46 H 0.036 0.964 47 H 0.216 0.784 48 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -0.677 -14.352 17.509 22.649 hybrid contribution 0.161 -0.119 -1.215 1.232 sum -0.516 -14.471 16.293 21.798 Atomic orbital electron populations 1.21856 0.94749 1.02203 1.01424 1.21481 0.96791 0.99404 0.94147 0.90028 1.21674 0.99210 0.80032 0.99325 1.48020 1.56120 1.11653 1.17904 1.17476 0.77005 0.85294 0.82983 1.90773 1.56098 1.64674 1.28880 1.22395 0.97617 0.93986 1.16194 1.22151 0.99611 0.82648 0.92092 1.42660 1.08501 1.07646 1.57406 1.22512 0.92999 0.90538 1.02677 1.21706 0.82249 1.00643 0.94846 1.22420 1.00947 0.94566 1.11422 1.18156 0.86519 0.88864 0.76717 1.90804 1.53242 1.52157 1.41584 1.21997 0.99900 0.95415 0.84901 1.21956 1.01595 0.96093 0.96882 1.21292 1.00090 0.94633 0.94580 0.91095 1.20727 0.95988 0.94664 0.85617 1.42383 1.56800 1.37534 1.00891 1.19299 1.22711 1.10658 0.83869 0.91226 1.24700 1.00197 0.98444 0.97751 1.69660 1.35994 1.24549 1.28320 0.86135 0.77411 0.78036 0.84770 1.20573 1.21928 1.21934 0.92493 0.93248 0.92061 0.89128 0.91543 0.81392 0.90115 0.88785 0.88754 0.81780 0.82874 0.90362 0.91181 0.91285 0.89597 0.95999 0.96436 0.78386 0.93703 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.21 8.38 37.16 0.31 -1.89 16 2 C -0.10 -1.39 2.72 -90.50 -0.25 -1.63 16 3 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 4 C 0.12 1.60 5.82 -3.71 -0.02 1.58 16 5 N -0.60 -8.16 2.41 -174.08 -0.42 -8.58 16 6 C 0.58 9.21 7.00 -12.58 -0.09 9.12 16 7 O -0.53 -10.43 16.39 5.26 0.09 -10.34 16 8 C -0.29 -3.81 5.07 -102.71 -0.52 -4.33 16 9 C 0.16 1.29 7.69 -16.54 -0.13 1.16 16 10 N -0.48 -2.44 2.97 -124.39 -0.37 -2.81 16 11 C 0.05 0.05 10.53 59.85 0.63 0.68 16 12 C 0.13 0.72 10.17 -17.09 -0.17 0.55 16 13 C -0.27 -2.63 10.01 -39.47 -0.40 -3.02 16 14 C 0.41 6.15 6.96 -34.68 -0.24 5.91 16 15 O -0.50 -9.89 17.43 4.85 0.08 -9.81 16 16 C 0.10 1.17 5.54 -3.72 -0.02 1.15 16 17 C -0.13 -1.89 4.91 -26.61 -0.13 -2.02 16 18 C -0.09 -1.37 1.96 -90.58 -0.18 -1.55 16 19 H 0.07 1.13 8.14 -51.92 -0.42 0.70 16 20 C 0.16 3.15 5.18 -4.04 -0.02 3.13 16 21 N -0.73 -18.12 5.32 -59.91 -0.32 -18.43 16 22 C -0.23 -6.52 9.99 -15.06 -0.15 -6.67 16 23 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 24 C -0.02 -0.44 5.50 -17.43 -0.10 -0.54 16 25 N -0.94 -27.66 13.06 55.49 0.72 -26.94 16 26 Si 0.90 22.31 29.55 -169.99 -5.02 17.29 16 27 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 28 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 29 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 30 H 0.06 0.95 5.97 -51.93 -0.31 0.64 16 31 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.06 0.94 6.58 -51.93 -0.34 0.60 16 33 H 0.09 1.32 7.03 -51.93 -0.36 0.96 16 34 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 35 H 0.17 0.87 7.26 -52.49 -0.38 0.48 16 36 H 0.08 -0.02 8.14 -51.93 -0.42 -0.44 16 37 H 0.09 -0.07 7.96 -51.93 -0.41 -0.48 16 38 H 0.09 0.01 7.96 -51.93 -0.41 -0.40 16 39 H 0.16 0.21 7.97 -52.49 -0.42 -0.21 16 40 H 0.15 1.28 8.06 -52.49 -0.42 0.86 16 41 H 0.08 0.79 4.72 -51.92 -0.24 0.54 16 42 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 43 H 0.07 1.12 6.33 -51.93 -0.33 0.79 16 44 H 0.09 1.42 7.15 -51.93 -0.37 1.05 16 45 H 0.02 0.46 6.74 -51.93 -0.35 0.11 16 46 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 47 H 0.38 9.74 6.85 -40.82 -0.28 9.46 16 48 H 0.25 7.23 8.31 -40.82 -0.34 6.89 16 LS Contribution 379.59 15.07 5.72 5.72 Total: -1.00 -39.57 379.59 -8.13 -47.69 By element: Atomic # 1 Polarization: 11.73 SS G_CDS: -7.15 Total: 4.59 kcal Atomic # 6 Polarization: 3.09 SS G_CDS: -1.47 Total: 1.62 kcal Atomic # 7 Polarization: -56.38 SS G_CDS: -0.38 Total: -56.76 kcal Atomic # 8 Polarization: -20.32 SS G_CDS: 0.17 Total: -20.15 kcal Atomic # 14 Polarization: 22.31 SS G_CDS: -5.02 Total: 17.29 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -39.57 -8.13 -47.69 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001184799948.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.594 kcal (2) G-P(sol) polarization free energy of solvation -39.566 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.971 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.129 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.695 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.101 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds