Wall clock time and date at job start Tue Mar 31 2020 17:34:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.08990 * 109.49803 * 2 1 4 4 C 1.53192 * 109.49211 * 239.93198 * 2 1 3 5 5 N 1.46929 * 108.76990 * 185.38350 * 4 2 1 6 6 C 1.34776 * 120.63006 * 233.58439 * 5 4 2 7 7 O 1.21282 * 119.99940 * 0.02562 * 6 5 4 8 8 C 1.50698 * 120.00035 * 179.97438 * 6 5 4 9 9 C 1.50706 * 109.47294 * 180.02562 * 8 6 5 10 10 C 1.38831 * 120.35473 * 269.73115 * 9 8 6 11 11 C 1.38382 * 118.47756 * 179.73468 * 10 9 8 12 12 C 1.38912 * 119.11812 * 0.53098 * 11 10 9 13 13 O 1.35675 * 119.68770 * 179.74678 * 12 11 10 14 14 N 1.32258 * 120.62732 * 359.73054 * 12 11 10 15 15 C 1.31959 * 121.64544 * 359.97438 * 14 12 11 16 16 C 1.46924 * 118.73954 * 53.86260 * 5 4 2 17 17 C 1.53621 * 108.54522 * 306.09185 * 16 5 4 18 18 C 1.53036 * 109.52011 * 120.08387 * 2 1 3 19 19 H 1.09000 * 109.46626 * 61.30900 * 18 2 1 20 20 C 1.53007 * 109.46129 * 301.33241 * 18 2 1 21 21 N 1.46495 * 109.47345 * 175.00197 * 20 18 2 22 22 C 1.36938 * 120.00292 * 180.02562 * 21 20 18 23 23 H 1.08005 * 119.99731 * 0.02562 * 22 21 20 24 24 C 1.38807 * 120.00194 * 180.02562 * 22 21 20 25 25 N 1.31618 * 120.00206 * 359.97438 * 24 22 21 26 26 Si 1.86801 * 119.99878 * 180.02562 * 24 22 21 27 27 H 1.48496 * 109.47330 * 59.99986 * 26 24 22 28 28 H 1.48501 * 109.47001 * 179.97438 * 26 24 22 29 29 H 1.48496 * 109.47272 * 299.99685 * 26 24 22 30 30 H 1.08996 * 109.47433 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.46527 * 300.06893 * 1 2 3 32 32 H 1.09001 * 109.46524 * 60.06004 * 1 2 3 33 33 H 1.08998 * 109.58573 * 65.60339 * 4 2 1 34 34 H 1.08993 * 109.59025 * 305.16935 * 4 2 1 35 35 H 1.09001 * 109.46665 * 60.00498 * 8 6 5 36 36 H 1.09000 * 109.47722 * 300.00830 * 8 6 5 37 37 H 1.07994 * 120.75458 * 359.96942 * 10 9 8 38 38 H 1.08000 * 120.43622 * 180.27875 * 11 10 9 39 39 H 0.96691 * 113.99979 * 269.97945 * 13 12 11 40 40 H 1.08007 * 119.58073 * 180.02562 * 15 14 12 41 41 H 1.08999 * 109.58555 * 65.92599 * 16 5 4 42 42 H 1.09004 * 109.59037 * 186.34806 * 16 5 4 43 43 H 1.08998 * 109.63687 * 294.86823 * 17 16 5 44 44 H 1.09002 * 109.43660 * 174.72243 * 17 16 5 45 45 H 1.08997 * 109.46987 * 295.00954 * 20 18 2 46 46 H 1.09007 * 109.46761 * 55.00301 * 20 18 2 47 47 H 0.97005 * 120.00124 * 0.02562 * 21 20 18 48 48 H 0.96999 * 120.00420 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8939 1.0274 0.0000 4 6 2.0413 -0.7235 -1.2498 5 7 3.5046 -0.8282 -1.1701 6 6 4.2807 -0.3852 -2.1790 7 8 3.7722 0.1060 -3.1645 8 6 5.7802 -0.4991 -2.0822 9 6 6.4086 0.0649 -3.3305 10 6 6.6573 -0.7552 -4.4228 11 6 7.2305 -0.1955 -5.5511 12 6 7.5461 1.1573 -5.5488 13 8 8.1132 1.7169 -6.6470 14 7 7.2988 1.9051 -4.4863 15 6 6.7478 1.4013 -3.3982 16 6 4.1057 -1.4308 0.0275 17 6 3.5715 -0.6943 1.2654 18 6 2.0414 -0.7230 1.2481 19 1 1.6978 -1.7574 1.2351 20 6 1.5047 -0.0233 2.4984 21 7 1.8947 -0.7831 3.6887 22 6 1.5236 -0.3457 4.9322 23 1 0.9431 0.5592 5.0354 24 6 1.8936 -1.0654 6.0600 25 7 2.6006 -2.1684 5.9343 26 14 1.3868 -0.4691 7.7562 27 1 -0.0947 -0.4105 7.8381 28 1 1.9022 -1.4077 8.7852 29 1 1.9497 0.8843 7.9938 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3632 0.5149 0.8894 32 1 -0.3632 0.5129 -0.8906 33 1 1.7633 -0.1577 -2.1389 34 1 1.6056 -1.7215 -1.2982 35 1 6.0589 -1.5476 -1.9766 36 1 6.1319 0.0594 -1.2146 37 1 6.4056 -1.8050 -4.3939 38 1 7.4335 -0.8033 -6.4205 39 1 9.0798 1.6917 -6.6466 40 1 6.5602 2.0426 -2.5497 41 1 3.8349 -2.4852 0.0812 42 1 5.1902 -1.3318 -0.0186 43 1 3.9161 0.3397 1.2535 44 1 3.9345 -1.1889 2.1664 45 1 1.9192 0.9831 2.5577 46 1 0.4175 0.0342 2.4441 47 1 2.4157 -1.5960 3.5960 48 1 2.8595 -2.6711 6.7224 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001184822304.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:34:52 Heat of formation + Delta-G solvation = -36.098720 kcal Electronic energy + Delta-G solvation = -28326.663208 eV Core-core repulsion = 24381.788689 eV Total energy + Delta-G solvation = -3944.874519 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.97424 -40.16548 -38.20205 -37.33178 -35.03323 -33.85082 -33.32366 -32.12224 -31.85136 -30.33423 -28.32387 -26.92555 -26.08463 -24.05497 -23.80983 -22.78090 -22.47678 -21.32685 -19.95439 -19.14987 -19.05914 -17.41553 -17.26429 -16.97022 -16.52104 -16.05236 -15.45265 -15.24321 -14.84078 -14.55077 -14.50599 -14.05299 -13.94605 -13.60743 -13.58155 -13.48745 -13.21103 -12.90065 -12.67501 -12.54545 -12.48669 -12.15914 -11.98357 -11.91092 -11.78669 -11.61216 -11.02032 -10.91556 -10.82850 -10.43085 -10.34820 -10.22538 -10.20458 -10.02009 -9.87075 -9.71674 -9.65419 -9.05525 -8.88150 -8.64735 -6.93099 -5.79422 -3.07234 0.65203 0.93389 2.48444 2.85749 3.21023 3.42149 3.46805 3.47489 3.50603 4.22750 4.37522 4.42813 4.55126 4.56643 4.62995 4.78686 4.90495 4.91448 4.98768 5.06085 5.08234 5.21077 5.28954 5.39183 5.41612 5.48808 5.55035 5.62324 5.67514 5.76514 5.83031 5.86404 5.89115 5.95155 6.04541 6.18208 6.20383 6.25902 6.30302 6.42165 6.47770 6.59900 6.81014 6.90704 7.14768 7.30221 7.61975 7.67617 8.04402 8.40183 9.51280 10.09426 10.43980 11.43482 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.021291 B = 0.002121 C = 0.002027 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1314.805770 B =13201.161415 C =13812.788352 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.097 4.097 3 H 0.072 0.928 4 C 0.118 3.882 5 N -0.608 5.608 6 C 0.516 3.484 7 O -0.541 6.541 8 C -0.098 4.098 9 C -0.123 4.123 10 C -0.046 4.046 11 C -0.184 4.184 12 C 0.305 3.695 13 O -0.483 6.483 14 N -0.502 5.502 15 C 0.140 3.860 16 C 0.103 3.897 17 C -0.126 4.126 18 C -0.089 4.089 19 H 0.072 0.928 20 C 0.156 3.844 21 N -0.731 5.731 22 C -0.238 4.238 23 H 0.069 0.931 24 C -0.014 4.014 25 N -0.935 5.935 26 Si 0.906 3.094 27 H -0.286 1.286 28 H -0.291 1.291 29 H -0.286 1.286 30 H 0.056 0.944 31 H 0.068 0.932 32 H 0.051 0.949 33 H 0.089 0.911 34 H 0.066 0.934 35 H 0.107 0.893 36 H 0.110 0.890 37 H 0.138 0.862 38 H 0.140 0.860 39 H 0.399 0.601 40 H 0.159 0.841 41 H 0.072 0.928 42 H 0.083 0.917 43 H 0.065 0.935 44 H 0.089 0.911 45 H 0.016 0.984 46 H 0.024 0.976 47 H 0.383 0.617 48 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.875 0.280 -21.254 23.438 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.116 4.116 3 H 0.091 0.909 4 C -0.004 4.004 5 N -0.341 5.341 6 C 0.303 3.697 7 O -0.418 6.418 8 C -0.139 4.139 9 C -0.126 4.126 10 C -0.072 4.072 11 C -0.205 4.205 12 C 0.126 3.874 13 O -0.290 6.290 14 N -0.220 5.220 15 C -0.017 4.017 16 C -0.019 4.019 17 C -0.164 4.164 18 C -0.108 4.108 19 H 0.090 0.910 20 C 0.029 3.971 21 N -0.376 5.376 22 C -0.369 4.369 23 H 0.086 0.914 24 C -0.210 4.210 25 N -0.584 5.584 26 Si 0.738 3.262 27 H -0.213 1.213 28 H -0.217 1.217 29 H -0.213 1.213 30 H 0.075 0.925 31 H 0.087 0.913 32 H 0.070 0.930 33 H 0.107 0.893 34 H 0.085 0.915 35 H 0.125 0.875 36 H 0.128 0.872 37 H 0.156 0.844 38 H 0.158 0.842 39 H 0.256 0.744 40 H 0.176 0.824 41 H 0.091 0.909 42 H 0.101 0.899 43 H 0.083 0.917 44 H 0.108 0.892 45 H 0.034 0.966 46 H 0.042 0.958 47 H 0.217 0.783 48 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 9.205 1.613 -21.908 23.818 hybrid contribution 0.142 -0.941 1.215 1.544 sum 9.347 0.672 -20.692 22.715 Atomic orbital electron populations 1.21833 0.94413 1.02181 1.02067 1.21455 0.96117 0.99920 0.94155 0.90919 1.21702 0.78673 1.00855 0.99201 1.48170 1.07123 1.60436 1.18334 1.20418 0.88801 0.77840 0.82603 1.90719 1.75372 1.44596 1.31113 1.20628 0.92388 1.03915 0.96939 1.20334 1.00524 0.95409 0.96325 1.21357 0.93991 1.00411 0.91460 1.22048 1.03606 0.94910 0.99919 1.19198 0.95094 0.87423 0.85657 1.84795 1.25549 1.82392 1.36296 1.67174 1.14670 1.40056 1.00060 1.22365 0.92535 0.92299 0.94544 1.22020 0.97962 0.97571 0.84384 1.22016 0.96131 1.01101 0.97174 1.21337 0.94706 1.00180 0.94544 0.90981 1.20757 0.96696 0.94057 0.85629 1.42363 1.65359 1.29031 1.00831 1.19182 1.27613 1.06262 0.83850 0.91351 1.24717 1.00954 0.97549 0.97801 1.69634 1.42741 1.17327 1.28672 0.86276 0.78069 0.77648 0.84251 1.21321 1.21711 1.21306 0.92516 0.91294 0.93023 0.89286 0.91542 0.87502 0.87182 0.84406 0.84185 0.74410 0.82370 0.90923 0.89875 0.91674 0.89220 0.96581 0.95817 0.78335 0.93508 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.74 8.82 37.16 0.33 -1.42 16 2 C -0.10 -1.21 2.41 -90.50 -0.22 -1.43 16 3 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 4 C 0.12 1.39 5.71 -3.71 -0.02 1.37 16 5 N -0.61 -6.77 2.97 -172.51 -0.51 -7.28 16 6 C 0.52 6.00 7.69 -10.99 -0.08 5.92 16 7 O -0.54 -8.39 15.45 5.56 0.09 -8.30 16 8 C -0.10 -0.78 4.20 -29.03 -0.12 -0.90 16 9 C -0.12 -1.17 4.39 -104.47 -0.46 -1.63 16 10 C -0.05 -0.40 9.85 -39.31 -0.39 -0.79 16 11 C -0.18 -1.61 10.04 -39.28 -0.39 -2.01 16 12 C 0.30 3.25 7.74 -17.12 -0.13 3.12 16 13 O -0.48 -4.37 13.56 -18.73 -0.25 -4.63 16 14 N -0.50 -6.11 10.39 -13.33 -0.14 -6.25 16 15 C 0.14 1.49 10.85 -17.57 -0.19 1.30 16 16 C 0.10 1.03 6.37 -3.49 -0.02 1.00 16 17 C -0.13 -1.66 5.26 -26.38 -0.14 -1.80 16 18 C -0.09 -1.29 1.73 -90.57 -0.16 -1.45 16 19 H 0.07 1.10 8.14 -51.93 -0.42 0.67 16 20 C 0.16 2.96 5.41 -4.04 -0.02 2.93 16 21 N -0.73 -17.59 5.32 -59.91 -0.32 -17.91 16 22 C -0.24 -6.49 9.99 -15.06 -0.15 -6.64 16 23 H 0.07 1.83 7.83 -52.48 -0.41 1.42 16 24 C -0.01 -0.41 5.50 -17.43 -0.10 -0.50 16 25 N -0.93 -27.41 13.06 55.49 0.72 -26.68 16 26 Si 0.91 22.05 29.55 -169.99 -5.02 17.02 16 27 H -0.29 -6.89 7.11 56.52 0.40 -6.48 16 28 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 29 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 30 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.07 0.89 6.31 -51.93 -0.33 0.56 16 32 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.09 1.14 7.00 -51.93 -0.36 0.78 16 34 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 35 H 0.11 0.60 7.88 -51.93 -0.41 0.19 16 36 H 0.11 0.69 7.65 -51.93 -0.40 0.29 16 37 H 0.14 0.87 8.06 -52.49 -0.42 0.45 16 38 H 0.14 0.89 8.06 -52.49 -0.42 0.47 16 39 H 0.40 1.43 9.06 45.56 0.41 1.84 16 40 H 0.16 1.40 8.06 -52.48 -0.42 0.98 16 41 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 42 H 0.08 0.62 5.93 -51.93 -0.31 0.31 16 43 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 44 H 0.09 1.37 7.15 -51.93 -0.37 1.00 16 45 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 46 H 0.02 0.46 6.15 -51.92 -0.32 0.14 16 47 H 0.38 9.54 6.84 -40.82 -0.28 9.26 16 48 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 LS Contribution 387.01 15.07 5.83 5.83 Total: -1.00 -35.24 387.01 -8.43 -43.67 By element: Atomic # 1 Polarization: 14.01 SS G_CDS: -6.56 Total: 7.45 kcal Atomic # 6 Polarization: -0.65 SS G_CDS: -2.27 Total: -2.92 kcal Atomic # 7 Polarization: -57.88 SS G_CDS: -0.24 Total: -58.13 kcal Atomic # 8 Polarization: -12.76 SS G_CDS: -0.17 Total: -12.93 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.02 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -35.24 -8.43 -43.67 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001184822304.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.571 kcal (2) G-P(sol) polarization free energy of solvation -35.239 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.667 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.431 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.670 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.099 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds