Wall clock time and date at job start Tue Mar 31 2020 17:34:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.50052 * 2 1 4 4 C 1.53628 * 109.65687 * 239.92090 * 2 1 3 5 5 N 1.46929 * 108.54361 * 294.84567 * 4 2 1 6 6 C 1.34774 * 120.62625 * 126.37168 * 5 4 2 7 7 O 1.21280 * 120.00288 * 359.72138 * 6 5 4 8 8 C 1.50708 * 119.99524 * 179.72572 * 6 5 4 9 9 C 1.50701 * 109.46869 * 179.97438 * 8 6 5 10 10 C 1.38823 * 120.35526 * 89.99800 * 9 8 6 11 11 C 1.38377 * 118.48573 * 179.97438 * 10 9 8 12 12 C 1.38917 * 119.11069 * 0.02562 * 11 10 9 13 13 O 1.35677 * 119.68499 * 179.97438 * 12 11 10 14 14 N 1.32245 * 120.63266 * 0.25373 * 12 11 10 15 15 C 1.31970 * 121.64340 * 359.47963 * 14 12 11 16 16 C 1.46926 * 118.73924 * 306.09778 * 5 4 2 17 17 C 1.53195 * 108.77340 * 53.85721 * 16 5 4 18 18 C 1.53037 * 109.31375 * 305.36210 * 17 16 5 19 19 H 1.09000 * 109.46679 * 301.36242 * 18 17 16 20 20 C 1.53005 * 109.45816 * 181.38587 * 18 17 16 21 21 N 1.46493 * 109.47140 * 65.00632 * 20 18 17 22 22 C 1.36935 * 120.00263 * 180.02562 * 21 20 18 23 23 H 1.08003 * 119.99843 * 359.97438 * 22 21 20 24 24 C 1.38815 * 120.00485 * 179.97438 * 22 21 20 25 25 N 1.31621 * 119.99335 * 359.97438 * 24 22 21 26 26 Si 1.86798 * 120.00218 * 179.97438 * 24 22 21 27 27 H 1.48495 * 109.47233 * 359.97438 * 26 24 22 28 28 H 1.48498 * 109.47369 * 120.00114 * 26 24 22 29 29 H 1.48503 * 109.46901 * 240.00191 * 26 24 22 30 30 H 1.09004 * 109.46875 * 299.93119 * 1 2 3 31 31 H 1.09000 * 109.46805 * 59.93094 * 1 2 3 32 32 H 1.08998 * 109.47284 * 179.97438 * 1 2 3 33 33 H 1.09009 * 109.73886 * 175.10933 * 4 2 1 34 34 H 1.08995 * 109.66788 * 54.54114 * 4 2 1 35 35 H 1.08997 * 109.47386 * 59.99349 * 8 6 5 36 36 H 1.08998 * 109.46554 * 299.99404 * 8 6 5 37 37 H 1.08005 * 120.75826 * 359.95176 * 10 9 8 38 38 H 1.07997 * 120.44495 * 180.02562 * 11 10 9 39 39 H 0.96700 * 114.00259 * 89.99879 * 13 12 11 40 40 H 1.08004 * 119.58234 * 180.27137 * 15 14 12 41 41 H 1.08990 * 109.58805 * 173.64383 * 16 5 4 42 42 H 1.09003 * 109.58583 * 294.07118 * 16 5 4 43 43 H 1.08998 * 109.50125 * 65.31791 * 17 16 5 44 44 H 1.08998 * 109.49483 * 185.38172 * 17 16 5 45 45 H 1.09001 * 109.46796 * 185.00510 * 20 18 17 46 46 H 1.09003 * 109.47359 * 304.99932 * 20 18 17 47 47 H 0.97004 * 120.00304 * 359.97438 * 21 20 18 48 48 H 0.97003 * 119.99434 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0275 0.0000 4 6 2.0468 -0.7251 -1.2519 5 7 1.6528 -2.1382 -1.1695 6 6 0.9766 -2.7223 -2.1784 7 8 0.6832 -2.0795 -3.1641 8 6 0.5849 -4.1744 -2.0816 9 6 -0.1562 -4.5791 -3.3299 10 6 0.5347 -5.0810 -4.4243 11 6 -0.1845 -5.4411 -5.5503 12 6 -1.5653 -5.2884 -5.5477 13 8 -2.2819 -5.6373 -6.6457 14 7 -2.1874 -4.8013 -4.4873 15 6 -1.5293 -4.4540 -3.3974 16 6 2.0153 -2.9038 0.0309 17 6 1.5037 -2.1557 1.2660 18 6 2.0409 -0.7228 1.2484 19 1 3.1306 -0.7436 1.2354 20 6 1.5601 0.0171 2.4984 21 7 2.1475 -0.6025 3.6888 22 6 1.8583 -0.1068 4.9321 23 1 1.1974 0.7413 5.0350 24 6 2.4144 -0.6942 6.0602 25 7 3.2193 -1.7279 5.9348 26 14 2.0204 -0.0175 7.7562 27 1 1.0983 1.1391 7.6256 28 1 1.3750 -1.0758 8.5738 29 1 3.2752 0.4227 8.4172 30 1 -0.3633 0.5128 0.8906 31 1 -0.3633 0.5149 -0.8894 32 1 -0.3634 -1.0276 -0.0005 33 1 3.1334 -0.6508 -1.2982 34 1 1.6095 -0.2752 -2.1432 35 1 -0.0586 -4.3201 -1.2140 36 1 1.4809 -4.7861 -1.9762 37 1 1.6091 -5.1878 -4.3977 38 1 0.3208 -5.8354 -6.4195 39 1 -2.5796 -6.5573 -6.6452 40 1 -2.0715 -4.0637 -2.5488 41 1 1.5572 -3.8918 -0.0136 42 1 3.0993 -3.0036 0.0871 43 1 0.4139 -2.1359 1.2539 44 1 1.8483 -2.6629 2.1671 45 1 1.8675 1.0614 2.4431 46 1 0.4732 -0.0389 2.5583 47 1 2.7407 -1.3644 3.5965 48 1 3.6077 -2.1387 6.7231 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001184822305.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:34:54 Heat of formation + Delta-G solvation = -59.365290 kcal Electronic energy + Delta-G solvation = -28569.455179 eV Core-core repulsion = 24623.571746 eV Total energy + Delta-G solvation = -3945.883433 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.76398 -41.10435 -39.27911 -38.04703 -36.51796 -34.90119 -34.19891 -33.21400 -32.56042 -31.89761 -29.05824 -28.44904 -27.15964 -25.43546 -24.72539 -24.09304 -23.64673 -22.70187 -20.83958 -19.80108 -19.58134 -18.91094 -18.13478 -17.96047 -17.22512 -16.79143 -16.72523 -16.46898 -15.97850 -15.66924 -15.48402 -15.33920 -15.19520 -14.92168 -14.76202 -14.36886 -14.15882 -13.94392 -13.75993 -13.64020 -13.55117 -13.23569 -12.96352 -12.85156 -12.77641 -12.65540 -12.59886 -12.33101 -12.12922 -11.99868 -11.89371 -11.52230 -11.34207 -11.19173 -10.97126 -10.88327 -10.70118 -10.43028 -9.74528 -9.56563 -8.94118 -7.93392 -5.20158 -0.02468 0.26846 1.48275 1.48973 1.58447 1.66088 2.04909 2.57368 2.58871 2.81354 3.40373 3.58556 3.63186 3.75071 3.77188 3.84627 3.92640 3.95192 4.03947 4.13055 4.27456 4.34228 4.37019 4.46798 4.52970 4.55057 4.68556 4.70419 4.76064 4.78938 4.81214 4.86799 4.92134 4.99820 5.02515 5.12313 5.22032 5.22903 5.23973 5.26189 5.38193 5.51955 5.58364 5.59515 5.68098 6.30340 6.47034 6.63039 6.94091 7.20856 7.37172 8.14114 8.38355 9.29999 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.024309 B = 0.002119 C = 0.002071 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1151.573770 B =13212.652251 C =13516.488352 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.090 4.090 3 H 0.084 0.916 4 C 0.120 3.880 5 N -0.602 5.602 6 C 0.516 3.484 7 O -0.583 6.583 8 C -0.093 4.093 9 C -0.128 4.128 10 C -0.049 4.049 11 C -0.184 4.184 12 C 0.288 3.712 13 O -0.496 6.496 14 N -0.537 5.537 15 C 0.121 3.879 16 C 0.110 3.890 17 C -0.123 4.123 18 C -0.078 4.078 19 H 0.067 0.933 20 C 0.158 3.842 21 N -0.740 5.740 22 C -0.242 4.242 23 H 0.070 0.930 24 C -0.073 4.073 25 N -0.965 5.965 26 Si 0.968 3.032 27 H -0.270 1.270 28 H -0.292 1.292 29 H -0.294 1.294 30 H 0.051 0.949 31 H 0.051 0.949 32 H 0.054 0.946 33 H 0.078 0.922 34 H 0.080 0.920 35 H 0.130 0.870 36 H 0.139 0.861 37 H 0.164 0.836 38 H 0.163 0.837 39 H 0.418 0.582 40 H 0.166 0.834 41 H 0.115 0.885 42 H 0.082 0.918 43 H 0.065 0.935 44 H 0.065 0.935 45 H 0.010 0.990 46 H 0.019 0.981 47 H 0.377 0.623 48 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.639 -10.463 -21.913 24.554 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.110 4.110 3 H 0.102 0.898 4 C -0.002 4.002 5 N -0.335 5.335 6 C 0.305 3.695 7 O -0.463 6.463 8 C -0.133 4.133 9 C -0.130 4.130 10 C -0.075 4.075 11 C -0.205 4.205 12 C 0.109 3.891 13 O -0.306 6.306 14 N -0.256 5.256 15 C -0.035 4.035 16 C -0.012 4.012 17 C -0.162 4.162 18 C -0.097 4.097 19 H 0.085 0.915 20 C 0.031 3.969 21 N -0.383 5.383 22 C -0.374 4.374 23 H 0.088 0.912 24 C -0.265 4.265 25 N -0.616 5.616 26 Si 0.798 3.202 27 H -0.195 1.195 28 H -0.220 1.220 29 H -0.221 1.221 30 H 0.070 0.930 31 H 0.070 0.930 32 H 0.073 0.927 33 H 0.096 0.904 34 H 0.098 0.902 35 H 0.148 0.852 36 H 0.157 0.843 37 H 0.182 0.818 38 H 0.181 0.819 39 H 0.279 0.721 40 H 0.183 0.817 41 H 0.133 0.867 42 H 0.101 0.899 43 H 0.084 0.916 44 H 0.084 0.916 45 H 0.028 0.972 46 H 0.037 0.963 47 H 0.209 0.791 48 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -4.706 -9.362 -22.586 24.898 hybrid contribution 0.690 -0.134 1.344 1.517 sum -4.017 -9.496 -21.242 23.612 Atomic orbital electron populations 1.21787 0.95017 1.01711 1.01095 1.21463 0.96361 0.99608 0.93536 0.89784 1.21678 0.99849 0.80772 0.97926 1.48159 1.55458 1.11519 1.18330 1.20957 0.76642 0.90072 0.81799 1.90709 1.56216 1.66569 1.32786 1.20710 1.03537 0.92073 0.96955 1.20494 0.94674 1.00633 0.97239 1.21741 1.01719 0.93021 0.90975 1.22311 0.93500 1.03740 1.00920 1.19491 0.88512 0.95393 0.85656 1.84740 1.73702 1.36270 1.35907 1.67124 1.43619 1.13755 1.01091 1.22611 0.91829 0.94564 0.94529 1.21955 1.01517 0.95519 0.82165 1.21872 1.01146 0.95166 0.97978 1.21174 0.99930 0.95445 0.93153 0.91450 1.20848 0.95458 0.94574 0.85983 1.42543 1.56766 1.37570 1.01466 1.19620 1.22076 1.10433 0.85319 0.91236 1.25468 1.00705 0.99153 1.01208 1.69791 1.37048 1.25761 1.28995 0.85153 0.77061 0.77549 0.80485 1.19493 1.21953 1.22141 0.92995 0.93011 0.92737 0.90392 0.90178 0.85248 0.84325 0.81842 0.81913 0.72094 0.81733 0.86654 0.89942 0.91611 0.91631 0.97177 0.96286 0.79053 0.94014 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.37 8.39 71.98 0.60 -2.77 16 2 C -0.09 -2.11 2.72 -10.57 -0.03 -2.14 16 3 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 4 C 0.12 2.56 5.87 86.51 0.51 3.07 16 5 N -0.60 -11.55 2.40 -818.04 -1.97 -13.51 16 6 C 0.52 10.51 7.69 87.66 0.67 11.18 16 7 O -0.58 -17.01 15.45 -3.03 -0.05 -17.05 16 8 C -0.09 -1.15 4.20 29.10 0.12 -1.03 16 9 C -0.13 -2.14 4.39 -19.77 -0.09 -2.23 16 10 C -0.05 -0.72 9.85 22.44 0.22 -0.50 16 11 C -0.18 -2.90 10.04 22.47 0.23 -2.67 16 12 C 0.29 5.94 7.74 84.79 0.66 6.60 16 13 O -0.50 -8.71 13.56 -89.95 -1.22 -9.93 16 14 N -0.54 -13.01 10.39 -308.95 -3.21 -16.22 16 15 C 0.12 2.48 10.85 84.63 0.92 3.40 16 16 C 0.11 1.83 6.34 86.36 0.55 2.38 16 17 C -0.12 -3.04 4.91 30.67 0.15 -2.89 16 18 C -0.08 -2.18 1.96 -10.77 -0.02 -2.20 16 19 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 20 C 0.16 5.94 5.18 86.38 0.45 6.39 16 21 N -0.74 -35.75 5.32 -343.45 -1.83 -37.58 16 22 C -0.24 -13.24 9.99 84.03 0.84 -12.40 16 23 H 0.07 3.72 7.83 -2.91 -0.02 3.70 16 24 C -0.07 -4.09 5.50 84.86 0.47 -3.62 16 25 N -0.96 -56.97 13.06 21.65 0.28 -56.68 16 26 Si 0.97 45.35 29.55 68.60 2.03 47.37 16 27 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 28 H -0.29 -13.64 7.11 99.48 0.71 -12.93 16 29 H -0.29 -13.80 7.11 99.48 0.71 -13.09 16 30 H 0.05 1.35 6.58 -2.38 -0.02 1.34 16 31 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 32 H 0.05 1.32 5.97 -2.39 -0.01 1.31 16 33 H 0.08 1.50 8.14 -2.38 -0.02 1.48 16 34 H 0.08 1.92 7.00 -2.39 -0.02 1.91 16 35 H 0.13 1.13 7.64 -2.39 -0.02 1.11 16 36 H 0.14 0.87 7.90 -2.39 -0.02 0.85 16 37 H 0.16 1.46 8.06 -2.91 -0.02 1.44 16 38 H 0.16 1.67 8.06 -2.91 -0.02 1.65 16 39 H 0.42 2.74 9.06 -74.06 -0.67 2.07 16 40 H 0.17 2.85 8.06 -2.91 -0.02 2.82 16 41 H 0.12 1.20 5.93 -2.39 -0.01 1.19 16 42 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 43 H 0.07 1.66 6.34 -2.39 -0.02 1.64 16 44 H 0.07 1.95 7.15 -2.39 -0.02 1.94 16 45 H 0.01 0.40 8.14 -2.39 -0.02 0.38 16 46 H 0.02 0.74 6.74 -2.39 -0.02 0.72 16 47 H 0.38 18.94 6.85 -92.71 -0.63 18.31 16 48 H 0.25 14.36 8.31 -92.71 -0.77 13.59 16 Total: -1.00 -76.63 383.01 -0.02 -76.65 By element: Atomic # 1 Polarization: 26.69 SS G_CDS: -0.31 Total: 26.38 kcal Atomic # 6 Polarization: -5.68 SS G_CDS: 6.25 Total: 0.57 kcal Atomic # 7 Polarization: -117.27 SS G_CDS: -6.72 Total: -123.99 kcal Atomic # 8 Polarization: -25.72 SS G_CDS: -1.27 Total: -26.98 kcal Atomic # 14 Polarization: 45.35 SS G_CDS: 2.03 Total: 47.37 kcal Total: -76.63 -0.02 -76.65 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001184822305.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.284 kcal (2) G-P(sol) polarization free energy of solvation -76.626 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.341 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.650 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds