Wall clock time and date at job start Tue Mar 31 2020 17:33:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09003 * 109.52776 * 2 1 4 4 C 1.53192 * 109.49680 * 120.08295 * 2 1 3 5 5 N 1.46927 * 108.77482 * 174.58274 * 4 2 1 6 6 C 1.34773 * 120.62871 * 126.36825 * 5 4 2 7 7 O 1.21490 * 120.00522 * 353.23369 * 6 5 4 8 8 C 1.48338 * 120.00263 * 173.23279 * 6 5 4 9 9 C 1.42268 * 126.94226 * 173.05220 * 8 6 5 10 10 C 1.35314 * 103.92129 * 180.02562 * 9 8 6 11 11 C 1.50707 * 126.66418 * 179.97438 * 10 9 8 12 12 C 1.52999 * 117.49790 * 188.61736 * 11 10 9 13 13 C 1.52995 * 117.49773 * 119.99458 * 11 10 9 14 14 O 1.34014 * 106.67207 * 359.97438 * 10 9 8 15 15 N 1.20913 * 111.83990 * 359.71474 * 14 10 9 16 16 C 1.46925 * 118.74429 * 306.39451 * 5 4 2 17 17 C 1.53198 * 108.77424 * 53.60221 * 16 5 4 18 18 C 1.53034 * 109.31395 * 305.37181 * 17 16 5 19 19 H 1.09004 * 109.46226 * 301.35722 * 18 17 16 20 20 C 1.53007 * 109.46012 * 181.38419 * 18 17 16 21 21 N 1.46500 * 109.46810 * 64.99864 * 20 18 17 22 22 C 1.36934 * 119.99431 * 180.27578 * 21 20 18 23 23 H 1.08005 * 120.00799 * 359.72795 * 22 21 20 24 24 C 1.38817 * 119.99939 * 179.71993 * 22 21 20 25 25 N 1.31617 * 120.00218 * 179.97438 * 24 22 21 26 26 Si 1.86799 * 119.99720 * 0.02562 * 24 22 21 27 27 H 1.48500 * 109.47295 * 89.99708 * 26 24 22 28 28 H 1.48507 * 109.47022 * 209.99624 * 26 24 22 29 29 H 1.48499 * 109.47185 * 329.99052 * 26 24 22 30 30 H 1.08997 * 109.46820 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.46732 * 300.08248 * 1 2 3 32 32 H 1.08996 * 109.46712 * 60.07800 * 1 2 3 33 33 H 1.09002 * 109.58588 * 54.79883 * 4 2 1 34 34 H 1.08993 * 109.70627 * 294.43985 * 4 2 1 35 35 H 1.08000 * 128.03636 * 359.97156 * 9 8 6 36 36 H 1.08996 * 115.54490 * 334.32401 * 11 10 9 37 37 H 1.08995 * 117.49844 * 359.97438 * 12 11 10 38 38 H 1.08993 * 117.49924 * 145.02054 * 12 11 10 39 39 H 1.09004 * 117.50040 * 214.98000 * 13 11 10 40 40 H 1.09001 * 117.50335 * 0.02562 * 13 11 10 41 41 H 1.08997 * 109.58474 * 293.82249 * 16 5 4 42 42 H 1.09001 * 109.70785 * 173.46399 * 16 5 4 43 43 H 1.08997 * 109.49775 * 185.41436 * 17 16 5 44 44 H 1.08999 * 109.52085 * 65.33979 * 17 16 5 45 45 H 1.09000 * 109.46523 * 304.99760 * 20 18 17 46 46 H 1.09000 * 109.47074 * 184.99990 * 20 18 17 47 47 H 0.96998 * 120.00064 * 0.02562 * 21 20 18 48 48 H 0.97000 * 120.00255 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8944 1.0273 0.0000 4 6 2.0413 -0.7238 1.2496 5 7 3.5046 -0.8292 1.1695 6 6 4.2811 -0.3858 2.1778 7 8 3.7835 0.2167 3.1081 8 6 5.7435 -0.6332 2.1518 9 6 6.7138 -0.1194 3.0566 10 6 7.8824 -0.6321 2.6064 11 6 9.2502 -0.4094 3.1984 12 6 10.4547 -0.9238 2.4075 13 6 10.0174 -1.6396 3.6871 14 8 7.5870 -1.3764 1.5318 15 7 6.4014 -1.3735 1.2947 16 6 4.1053 -1.4268 -0.0308 17 6 3.5708 -0.6950 -1.2661 18 6 2.0409 -0.7231 -1.2484 19 1 1.6967 -1.7573 -1.2351 20 6 1.5037 -0.0231 -2.4985 21 7 1.8917 -0.7839 -3.6888 22 6 1.5252 -0.3433 -4.9324 23 1 0.9464 0.5627 -5.0356 24 6 1.8978 -1.0610 -6.0607 25 7 1.5451 -0.6377 -7.2561 26 14 2.8985 -2.6282 -5.8824 27 1 1.9814 -3.7888 -5.7514 28 1 3.7555 -2.8074 -7.0819 29 1 3.7541 -2.5342 -4.6724 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5151 0.8893 32 1 -0.3632 0.5126 -0.8907 33 1 1.6052 -1.7217 1.2979 34 1 1.7638 -0.1602 2.1402 35 1 6.5548 0.5297 3.9050 36 1 9.3745 0.5169 3.7594 37 1 10.2577 -1.4237 1.4592 38 1 11.3716 -0.3360 2.4479 39 1 10.6467 -1.5227 4.5694 40 1 9.5330 -2.6102 3.5800 41 1 3.8375 -2.4818 -0.0869 42 1 5.1899 -1.3268 0.0123 43 1 3.9334 -1.1897 -2.1672 44 1 3.9159 0.3388 -1.2547 45 1 1.9194 0.9827 -2.5585 46 1 0.4167 0.0357 -2.4431 47 1 2.4113 -1.5978 -3.5962 48 1 1.8058 -1.1390 -8.0445 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001184882123.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:33:25 Heat of formation + Delta-G solvation = 74.241354 kcal Electronic energy + Delta-G solvation = -28837.976643 eV Core-core repulsion = 24897.886829 eV Total energy + Delta-G solvation = -3940.089814 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -45.42186 -40.38779 -38.18523 -37.90969 -35.25478 -34.45823 -33.54581 -32.09257 -31.78511 -30.70349 -27.43202 -27.12871 -25.09351 -24.04455 -23.56517 -22.91061 -22.62448 -22.18548 -21.13108 -20.00015 -19.08209 -18.14085 -17.76349 -17.58981 -17.11683 -16.27730 -16.01574 -15.41466 -14.95919 -14.80528 -14.49958 -14.18487 -14.12123 -13.91067 -13.47339 -13.36748 -13.13843 -12.95431 -12.87664 -12.51284 -12.13729 -12.04532 -11.97113 -11.89605 -11.76971 -11.44678 -11.32589 -11.04002 -10.97371 -10.88289 -10.77515 -10.51441 -10.49587 -10.18993 -10.14295 -9.97407 -9.57501 -9.56722 -8.88769 -8.75815 -7.20676 -5.75974 -3.10957 0.76567 1.28974 2.42145 2.65311 2.90304 3.26763 3.36670 3.39351 3.45062 3.61326 3.82463 4.18776 4.34509 4.42021 4.59402 4.61404 4.76097 4.80725 4.88430 4.89934 4.98370 5.05052 5.09681 5.25287 5.27520 5.39524 5.44634 5.50638 5.53981 5.54129 5.54944 5.61586 5.68191 5.73345 5.77841 5.88653 5.93915 6.11732 6.17734 6.23066 6.34363 6.38943 6.45684 6.74075 6.82272 7.10984 7.63166 7.87114 8.00737 8.43214 9.22506 9.94928 10.15136 11.42644 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.012332 B = 0.002934 C = 0.002453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2270.020168 B = 9541.864504 C =11409.633058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.096 4.096 3 H 0.076 0.924 4 C 0.117 3.883 5 N -0.591 5.591 6 C 0.597 3.403 7 O -0.529 6.529 8 C -0.017 4.017 9 C -0.177 4.177 10 C 0.001 3.999 11 C -0.089 4.089 12 C -0.165 4.165 13 C -0.161 4.161 14 O 0.115 5.885 15 N -0.324 5.324 16 C 0.086 3.914 17 C -0.126 4.126 18 C -0.094 4.094 19 H 0.072 0.928 20 C 0.161 3.839 21 N -0.755 5.755 22 C -0.242 4.242 23 H 0.089 0.911 24 C 0.003 3.997 25 N -0.935 5.935 26 Si 0.884 3.116 27 H -0.284 1.284 28 H -0.291 1.291 29 H -0.277 1.277 30 H 0.056 0.944 31 H 0.053 0.947 32 H 0.071 0.929 33 H 0.071 0.929 34 H 0.093 0.907 35 H 0.181 0.819 36 H 0.141 0.859 37 H 0.106 0.894 38 H 0.108 0.892 39 H 0.108 0.892 40 H 0.101 0.899 41 H 0.071 0.929 42 H 0.113 0.887 43 H 0.084 0.916 44 H 0.066 0.934 45 H 0.025 0.975 46 H 0.034 0.966 47 H 0.360 0.640 48 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.962 -1.286 25.740 29.800 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.116 4.116 3 H 0.094 0.906 4 C -0.004 4.004 5 N -0.323 5.323 6 C 0.382 3.618 7 O -0.404 6.404 8 C -0.175 4.175 9 C -0.199 4.199 10 C -0.062 4.062 11 C -0.108 4.108 12 C -0.202 4.202 13 C -0.198 4.198 14 O 0.043 5.957 15 N -0.028 5.028 16 C -0.037 4.037 17 C -0.164 4.164 18 C -0.113 4.113 19 H 0.091 0.909 20 C 0.034 3.966 21 N -0.401 5.401 22 C -0.372 4.372 23 H 0.107 0.893 24 C -0.193 4.193 25 N -0.583 5.583 26 Si 0.714 3.286 27 H -0.211 1.211 28 H -0.217 1.217 29 H -0.204 1.204 30 H 0.076 0.924 31 H 0.072 0.928 32 H 0.089 0.911 33 H 0.090 0.910 34 H 0.112 0.888 35 H 0.199 0.801 36 H 0.159 0.841 37 H 0.124 0.876 38 H 0.126 0.874 39 H 0.126 0.874 40 H 0.119 0.881 41 H 0.089 0.911 42 H 0.130 0.870 43 H 0.102 0.898 44 H 0.085 0.915 45 H 0.043 0.957 46 H 0.051 0.949 47 H 0.193 0.807 48 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 14.149 -1.550 24.997 28.765 hybrid contribution 0.682 -0.653 0.433 1.039 sum 14.831 -2.204 25.430 29.521 Atomic orbital electron populations 1.21838 0.94008 1.02291 1.02362 1.21447 0.96364 1.00033 0.93742 0.90589 1.21824 0.77667 1.01265 0.99663 1.47996 1.07244 1.59301 1.17777 1.16950 0.83024 0.79106 0.82675 1.90774 1.73428 1.40912 1.35331 1.23479 0.97120 1.00905 0.95997 1.22304 0.89256 1.05291 1.03074 1.23425 0.96935 0.96145 0.89675 1.20471 0.84820 1.00815 1.04681 1.23110 0.97136 1.03222 0.96732 1.23135 1.02105 0.95725 0.98883 1.84790 1.19781 1.52988 1.38132 1.74148 0.89762 1.18627 1.20223 1.22483 1.00423 0.97229 0.83540 1.21952 0.96036 1.01341 0.97086 1.21424 0.94705 1.00265 0.94930 0.90946 1.20735 0.97231 0.94079 0.84544 1.42734 1.66277 1.28496 1.02603 1.19063 1.28293 1.07922 0.81892 0.89290 1.24675 1.00753 0.98731 0.95118 1.69701 1.51004 1.40627 0.96999 0.86555 0.80436 0.84710 0.76849 1.21113 1.21739 1.20353 0.92448 0.92783 0.91053 0.91038 0.88831 0.80146 0.84115 0.87580 0.87395 0.87353 0.88071 0.91108 0.86969 0.89759 0.91525 0.95744 0.94869 0.80738 0.93093 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.72 8.82 37.16 0.33 -1.40 16 2 C -0.10 -1.24 2.41 -90.50 -0.22 -1.46 16 3 H 0.08 1.05 8.14 -51.93 -0.42 0.62 16 4 C 0.12 1.45 5.73 -3.71 -0.02 1.43 16 5 N -0.59 -7.98 2.97 -173.70 -0.52 -8.49 16 6 C 0.60 8.56 7.71 -12.11 -0.09 8.47 16 7 O -0.53 -8.60 16.38 5.37 0.09 -8.51 16 8 C -0.02 -0.21 6.87 -82.53 -0.57 -0.78 16 9 C -0.18 -1.77 10.93 -39.08 -0.43 -2.19 16 10 C 0.00 0.01 6.93 -35.35 -0.24 -0.24 16 11 C -0.09 -0.46 6.27 -91.77 -0.58 -1.04 16 12 C -0.17 -0.73 10.18 -26.73 -0.27 -1.00 16 13 C -0.16 -0.67 10.23 -26.73 -0.27 -0.95 16 14 O 0.12 1.21 10.96 17.25 0.19 1.40 16 15 N -0.32 -4.00 8.66 33.30 0.29 -3.71 16 16 C 0.09 1.14 6.12 -3.71 -0.02 1.12 16 17 C -0.13 -1.90 5.25 -26.61 -0.14 -2.04 16 18 C -0.09 -1.43 1.73 -90.58 -0.16 -1.59 16 19 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 20 C 0.16 3.09 5.41 -4.04 -0.02 3.07 16 21 N -0.76 -17.92 5.12 -59.90 -0.31 -18.23 16 22 C -0.24 -6.90 10.47 -15.06 -0.16 -7.06 16 23 H 0.09 2.73 8.06 -52.48 -0.42 2.30 16 24 C 0.00 0.08 5.50 -17.43 -0.10 -0.01 16 25 N -0.94 -29.63 13.97 55.49 0.78 -28.86 16 26 Si 0.88 22.21 27.74 -169.99 -4.71 17.49 16 27 H -0.28 -7.10 7.11 56.52 0.40 -6.69 16 28 H -0.29 -7.41 7.11 56.52 0.40 -7.01 16 29 H -0.28 -6.49 6.52 56.52 0.37 -6.12 16 30 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.07 0.91 6.29 -51.93 -0.33 0.58 16 33 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 34 H 0.09 1.18 7.00 -51.93 -0.36 0.81 16 35 H 0.18 1.48 8.06 -52.49 -0.42 1.05 16 36 H 0.14 0.47 8.14 -51.93 -0.42 0.05 16 37 H 0.11 0.55 8.01 -51.93 -0.42 0.13 16 38 H 0.11 0.32 8.14 -51.93 -0.42 -0.11 16 39 H 0.11 0.28 8.14 -51.93 -0.42 -0.15 16 40 H 0.10 0.49 8.14 -51.93 -0.42 0.06 16 41 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 42 H 0.11 1.51 4.22 -55.99 -0.24 1.28 16 43 H 0.08 1.40 7.15 -51.93 -0.37 1.03 16 44 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 45 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 46 H 0.03 0.64 6.14 -51.93 -0.32 0.32 16 47 H 0.36 8.30 4.71 -40.82 -0.19 8.11 16 48 H 0.26 7.81 8.31 -40.82 -0.34 7.47 16 LS Contribution 382.76 15.07 5.77 5.77 Total: -1.00 -33.77 382.76 -8.70 -42.47 By element: Atomic # 1 Polarization: 13.64 SS G_CDS: -7.31 Total: 6.33 kcal Atomic # 6 Polarization: -2.69 SS G_CDS: -2.96 Total: -5.65 kcal Atomic # 7 Polarization: -59.53 SS G_CDS: 0.24 Total: -59.29 kcal Atomic # 8 Polarization: -7.39 SS G_CDS: 0.28 Total: -7.11 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -4.71 Total: 17.49 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -33.77 -8.70 -42.47 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001184882123.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.710 kcal (2) G-P(sol) polarization free energy of solvation -33.768 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.942 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.701 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.469 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.241 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds