Wall clock time and date at job start Tue Mar 31 2020 17:33:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.08999 * 109.51878 * 2 1 4 4 C 1.53194 * 109.49539 * 239.91722 * 2 1 3 5 5 N 1.46925 * 108.77184 * 185.41187 * 4 2 1 6 6 C 1.34782 * 120.63079 * 233.62939 * 5 4 2 7 7 O 1.21496 * 119.99711 * 355.05976 * 6 5 4 8 8 C 1.48323 * 120.00089 * 175.05379 * 6 5 4 9 9 C 1.42276 * 126.94025 * 186.24556 * 8 6 5 10 10 C 1.35315 * 103.92095 * 179.91046 * 9 8 6 11 11 C 1.50705 * 126.66051 * 180.08608 * 10 9 8 12 12 C 1.53001 * 117.49439 * 189.03614 * 11 10 9 13 13 C 1.53003 * 117.49230 * 120.37878 * 11 10 9 14 14 O 1.34011 * 106.66903 * 0.35380 * 10 9 8 15 15 N 1.20898 * 111.85129 * 359.75694 * 14 10 9 16 16 C 1.46923 * 118.74073 * 53.60592 * 5 4 2 17 17 C 1.53194 * 108.78022 * 306.39234 * 16 5 4 18 18 C 1.53035 * 109.49925 * 120.07773 * 2 1 3 19 19 H 1.08998 * 109.45197 * 61.30142 * 18 2 1 20 20 C 1.53005 * 109.45952 * 301.33971 * 18 2 1 21 21 N 1.46500 * 109.47000 * 174.93475 * 20 18 2 22 22 C 1.36937 * 119.99983 * 179.97438 * 21 20 18 23 23 H 1.08005 * 119.99795 * 359.97438 * 22 21 20 24 24 C 1.38810 * 120.00164 * 179.97438 * 22 21 20 25 25 N 1.31621 * 120.00294 * 180.02562 * 24 22 21 26 26 Si 1.86796 * 119.99874 * 0.02562 * 24 22 21 27 27 H 1.48496 * 109.47422 * 269.99793 * 26 24 22 28 28 H 1.48500 * 109.47253 * 29.99810 * 26 24 22 29 29 H 1.48505 * 109.47008 * 150.00088 * 26 24 22 30 30 H 1.09006 * 109.46537 * 299.92101 * 1 2 3 31 31 H 1.08992 * 109.47293 * 59.92242 * 1 2 3 32 32 H 1.08999 * 109.46564 * 179.97438 * 1 2 3 33 33 H 1.08995 * 109.58478 * 65.62497 * 4 2 1 34 34 H 1.08998 * 109.58544 * 305.19833 * 4 2 1 35 35 H 1.07995 * 128.03458 * 0.03807 * 9 8 6 36 36 H 1.08993 * 115.55429 * 334.71102 * 11 10 9 37 37 H 1.08992 * 117.50308 * 359.97438 * 12 11 10 38 38 H 1.08995 * 117.49539 * 145.02929 * 12 11 10 39 39 H 1.08999 * 117.49601 * 214.97817 * 13 11 10 40 40 H 1.08996 * 117.50345 * 0.02562 * 13 11 10 41 41 H 1.09004 * 109.59095 * 186.60362 * 16 5 4 42 42 H 1.09003 * 109.70096 * 66.24598 * 16 5 4 43 43 H 1.08998 * 109.49540 * 294.68419 * 17 16 5 44 44 H 1.08993 * 109.52504 * 174.59854 * 17 16 5 45 45 H 1.09001 * 109.47378 * 54.92821 * 20 18 2 46 46 H 1.09004 * 109.46882 * 294.92579 * 20 18 2 47 47 H 0.96994 * 120.00162 * 359.97438 * 21 20 18 48 48 H 0.96997 * 120.00101 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8943 1.0274 0.0000 4 6 2.0413 -0.7239 -1.2496 5 7 3.5046 -0.8291 -1.1696 6 6 4.2812 -0.3856 -2.1780 7 8 3.7717 0.0240 -3.2020 8 6 5.7577 -0.3975 -2.0374 9 6 6.7077 0.1445 -2.9473 10 6 7.9014 -0.1191 -2.3672 11 6 9.2624 0.2401 -2.9056 12 6 10.4820 -0.3415 -2.1879 13 6 10.1461 1.1451 -2.0449 14 8 7.6384 -0.7669 -1.2239 15 7 6.4507 -0.9144 -1.0532 16 6 4.1054 -1.4265 0.0308 17 6 3.5710 -0.6949 1.2661 18 6 2.0409 -0.7230 1.2483 19 1 1.6968 -1.7572 1.2352 20 6 1.5038 -0.0231 2.4984 21 7 1.8919 -0.7837 3.6888 22 6 1.5210 -0.3459 4.9321 23 1 0.9428 0.5605 5.0352 24 6 1.8883 -1.0669 6.0600 25 7 1.5315 -0.6463 7.2550 26 14 2.8890 -2.6341 5.8817 27 1 1.9721 -3.7939 5.7435 28 1 3.7499 -2.5372 4.6756 29 1 3.7407 -2.8170 7.0844 30 1 -0.3632 0.5126 0.8908 31 1 -0.3633 0.5150 -0.8892 32 1 -0.3632 -1.0277 -0.0005 33 1 1.7638 -0.1580 -2.1388 34 1 1.6053 -1.7217 -1.2979 35 1 6.5195 0.6508 -3.8826 36 1 9.3239 0.3581 -3.9874 37 1 10.3000 -0.9835 -1.3261 38 1 11.3460 -0.6057 -2.7974 39 1 10.7893 1.8582 -2.5605 40 1 9.7434 1.4804 -1.0891 41 1 5.1897 -1.3244 -0.0137 42 1 3.8398 -2.4822 0.0881 43 1 3.9160 0.3390 1.2540 44 1 3.9335 -1.1890 2.1674 45 1 0.4167 0.0358 2.4431 46 1 1.9195 0.9828 2.5585 47 1 2.4115 -1.5975 3.5962 48 1 1.7884 -1.1499 8.0432 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001184882124.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:33:28 Heat of formation + Delta-G solvation = 76.320509 kcal Electronic energy + Delta-G solvation = -28914.283484 eV Core-core repulsion = 24974.283829 eV Total energy + Delta-G solvation = -3939.999655 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -45.41804 -40.38529 -38.18721 -37.89175 -35.25639 -34.46345 -33.54557 -32.10235 -31.77158 -30.69776 -27.42874 -27.12415 -25.10680 -24.04532 -23.56155 -22.89839 -22.62191 -22.18008 -21.12231 -19.99072 -19.10246 -18.11396 -17.77796 -17.59553 -17.14543 -16.28093 -15.99935 -15.37092 -14.98530 -14.80895 -14.53365 -14.18247 -14.10627 -13.91166 -13.42823 -13.38948 -13.17877 -12.94926 -12.86533 -12.52498 -12.12143 -12.06293 -11.93854 -11.88443 -11.73722 -11.40039 -11.32564 -11.02591 -10.95231 -10.88109 -10.76810 -10.51638 -10.48862 -10.17730 -10.14034 -9.92472 -9.59159 -9.57184 -8.88655 -8.75704 -7.20623 -5.76004 -3.10986 0.77044 1.29436 2.41051 2.65511 2.91960 3.27334 3.36764 3.39442 3.45096 3.60794 3.83781 4.20063 4.35825 4.42186 4.59246 4.59458 4.76462 4.81114 4.87838 4.91997 4.98149 5.05541 5.12198 5.26389 5.28375 5.40241 5.46364 5.51587 5.54099 5.55388 5.56807 5.62638 5.69262 5.73789 5.77996 5.89056 5.97884 6.12373 6.17681 6.24557 6.35070 6.38806 6.47144 6.74052 6.82367 7.11373 7.64624 7.88246 8.00734 8.43251 9.22536 9.94976 10.15178 11.42650 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.011566 B = 0.003052 C = 0.002535 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2420.268717 B = 9172.672244 C =11043.410508 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.096 4.096 3 H 0.075 0.925 4 C 0.118 3.882 5 N -0.590 5.590 6 C 0.596 3.404 7 O -0.530 6.530 8 C -0.014 4.014 9 C -0.177 4.177 10 C 0.003 3.997 11 C -0.089 4.089 12 C -0.165 4.165 13 C -0.161 4.161 14 O 0.113 5.887 15 N -0.324 5.324 16 C 0.073 3.927 17 C -0.124 4.124 18 C -0.095 4.095 19 H 0.072 0.928 20 C 0.161 3.839 21 N -0.755 5.755 22 C -0.242 4.242 23 H 0.089 0.911 24 C 0.003 3.997 25 N -0.935 5.935 26 Si 0.884 3.116 27 H -0.284 1.284 28 H -0.277 1.277 29 H -0.291 1.291 30 H 0.071 0.929 31 H 0.053 0.947 32 H 0.057 0.943 33 H 0.093 0.907 34 H 0.072 0.928 35 H 0.181 0.819 36 H 0.141 0.859 37 H 0.106 0.894 38 H 0.107 0.893 39 H 0.108 0.892 40 H 0.102 0.898 41 H 0.125 0.875 42 H 0.070 0.930 43 H 0.065 0.935 44 H 0.083 0.917 45 H 0.033 0.967 46 H 0.024 0.976 47 H 0.360 0.640 48 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.131 0.720 -24.777 29.041 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.116 4.116 3 H 0.093 0.907 4 C -0.004 4.004 5 N -0.322 5.322 6 C 0.382 3.618 7 O -0.405 6.405 8 C -0.173 4.173 9 C -0.200 4.200 10 C -0.060 4.060 11 C -0.108 4.108 12 C -0.202 4.202 13 C -0.198 4.198 14 O 0.043 5.957 15 N -0.028 5.028 16 C -0.049 4.049 17 C -0.162 4.162 18 C -0.114 4.114 19 H 0.090 0.910 20 C 0.034 3.966 21 N -0.401 5.401 22 C -0.372 4.372 23 H 0.107 0.893 24 C -0.193 4.193 25 N -0.584 5.584 26 Si 0.714 3.286 27 H -0.211 1.211 28 H -0.203 1.203 29 H -0.217 1.217 30 H 0.090 0.910 31 H 0.072 0.928 32 H 0.076 0.924 33 H 0.111 0.889 34 H 0.090 0.910 35 H 0.199 0.801 36 H 0.159 0.841 37 H 0.124 0.876 38 H 0.126 0.874 39 H 0.127 0.873 40 H 0.121 0.879 41 H 0.141 0.859 42 H 0.088 0.912 43 H 0.084 0.916 44 H 0.102 0.898 45 H 0.051 0.949 46 H 0.042 0.958 47 H 0.193 0.807 48 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 14.358 0.435 -24.024 27.991 hybrid contribution 0.616 -0.799 -0.506 1.129 sum 14.974 -0.364 -24.531 28.742 Atomic orbital electron populations 1.21839 0.93981 1.02319 1.02350 1.21455 0.96376 0.99972 0.93811 0.90667 1.21822 0.77745 1.01338 0.99498 1.48005 1.07230 1.58915 1.18036 1.16966 0.83184 0.78132 0.83533 1.90776 1.73480 1.48019 1.28266 1.23492 0.96830 1.03238 0.93703 1.22295 0.89118 1.05595 1.02970 1.23429 0.96876 0.98144 0.87556 1.20479 0.83990 1.07483 0.98893 1.23119 0.97335 0.96780 1.03013 1.23160 1.01303 0.93847 1.01491 1.84790 1.19892 1.55686 1.35343 1.73937 0.89281 1.18776 1.20835 1.22720 1.01464 0.97072 0.83636 1.21917 0.95879 1.01302 0.97113 1.21428 0.94805 1.00245 0.94888 0.90961 1.20733 0.97204 0.94076 0.84559 1.42731 1.66149 1.28605 1.02619 1.19063 1.28319 1.07848 0.81933 0.89296 1.24671 1.00751 0.98723 0.95120 1.69702 1.51023 1.40592 0.97039 0.86555 0.80443 0.84705 0.76860 1.21118 1.20341 1.21729 0.91047 0.92790 0.92425 0.88896 0.91020 0.80142 0.84130 0.87600 0.87442 0.87322 0.87935 0.85851 0.91171 0.91594 0.89820 0.94893 0.95767 0.80736 0.93091 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.72 8.82 37.16 0.33 -1.40 16 2 C -0.10 -1.25 2.41 -90.50 -0.22 -1.47 16 3 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 4 C 0.12 1.46 5.70 -3.71 -0.02 1.44 16 5 N -0.59 -7.99 2.97 -173.70 -0.52 -8.51 16 6 C 0.60 8.56 7.72 -12.11 -0.09 8.47 16 7 O -0.53 -8.60 16.39 5.37 0.09 -8.51 16 8 C -0.01 -0.18 6.95 -82.52 -0.57 -0.75 16 9 C -0.18 -1.77 10.93 -39.07 -0.43 -2.20 16 10 C 0.00 0.03 6.93 -35.35 -0.24 -0.22 16 11 C -0.09 -0.47 6.26 -91.77 -0.57 -1.05 16 12 C -0.17 -0.74 10.18 -26.69 -0.27 -1.01 16 13 C -0.16 -0.73 10.24 -26.69 -0.27 -1.01 16 14 O 0.11 1.20 10.96 17.26 0.19 1.39 16 15 N -0.32 -4.03 8.51 33.29 0.28 -3.75 16 16 C 0.07 0.98 6.33 -3.71 -0.02 0.96 16 17 C -0.12 -1.87 5.25 -26.61 -0.14 -2.01 16 18 C -0.09 -1.44 1.73 -90.58 -0.16 -1.60 16 19 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 20 C 0.16 3.10 5.41 -4.04 -0.02 3.08 16 21 N -0.76 -17.95 5.12 -59.90 -0.31 -18.25 16 22 C -0.24 -6.90 10.47 -15.06 -0.16 -7.06 16 23 H 0.09 2.72 8.06 -52.48 -0.42 2.30 16 24 C 0.00 0.09 5.50 -17.43 -0.10 -0.01 16 25 N -0.94 -29.65 13.97 55.49 0.78 -28.88 16 26 Si 0.88 22.22 27.73 -169.99 -4.71 17.51 16 27 H -0.28 -7.10 7.11 56.52 0.40 -6.70 16 28 H -0.28 -6.49 6.52 56.52 0.37 -6.13 16 29 H -0.29 -7.41 7.11 56.52 0.40 -7.01 16 30 H 0.07 0.91 6.29 -51.93 -0.33 0.58 16 31 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 32 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.09 1.17 7.03 -51.93 -0.37 0.81 16 34 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 35 H 0.18 1.47 8.06 -52.49 -0.42 1.05 16 36 H 0.14 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.11 0.55 8.01 -51.93 -0.42 0.13 16 38 H 0.11 0.30 8.14 -51.93 -0.42 -0.12 16 39 H 0.11 0.32 8.14 -51.93 -0.42 -0.10 16 40 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 41 H 0.12 1.67 3.76 -74.17 -0.28 1.39 16 42 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 43 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 44 H 0.08 1.40 7.15 -51.93 -0.37 1.03 16 45 H 0.03 0.64 6.14 -51.93 -0.32 0.32 16 46 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 47 H 0.36 8.31 4.71 -40.82 -0.19 8.12 16 48 H 0.26 7.81 8.31 -40.82 -0.34 7.47 16 LS Contribution 382.46 15.07 5.76 5.76 Total: -1.00 -33.78 382.46 -8.76 -42.54 By element: Atomic # 1 Polarization: 13.87 SS G_CDS: -7.36 Total: 6.52 kcal Atomic # 6 Polarization: -2.86 SS G_CDS: -2.97 Total: -5.83 kcal Atomic # 7 Polarization: -59.62 SS G_CDS: 0.24 Total: -59.39 kcal Atomic # 8 Polarization: -7.39 SS G_CDS: 0.28 Total: -7.11 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -4.71 Total: 17.51 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -33.78 -8.76 -42.54 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001184882124.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.863 kcal (2) G-P(sol) polarization free energy of solvation -33.782 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.761 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.543 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds