Wall clock time and date at job start Tue Mar 31 2020 17:31:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35750 * 117.00214 * 2 1 4 4 C 1.39211 * 120.81177 * 359.97061 * 3 2 1 5 5 C 1.38314 * 119.28640 * 180.02562 * 4 3 2 6 6 N 1.31619 * 120.97095 * 359.73928 * 5 4 3 7 7 C 1.32798 * 121.77673 * 0.52974 * 6 5 4 8 8 C 1.48183 * 119.69675 * 179.75168 * 7 6 5 9 9 O 1.21510 * 120.00635 * 202.54122 * 8 7 6 10 10 N 1.34779 * 119.99757 * 22.53651 * 8 7 6 11 11 C 1.46926 * 120.63261 * 359.69550 * 10 8 7 12 12 C 1.53199 * 108.77134 * 126.41063 * 11 10 8 13 13 C 1.53041 * 109.33458 * 54.62565 * 12 11 10 14 14 H 1.09003 * 109.46322 * 58.67310 * 13 12 11 15 15 C 1.53002 * 109.45674 * 178.62625 * 13 12 11 16 16 N 1.46504 * 109.47300 * 295.00024 * 15 13 12 17 17 C 1.36936 * 120.00214 * 179.97438 * 16 15 13 18 18 H 1.08004 * 119.99727 * 0.02562 * 17 16 15 19 19 C 1.38812 * 120.00025 * 179.97438 * 17 16 15 20 20 N 1.31617 * 120.00083 * 0.02562 * 19 17 16 21 21 Si 1.86797 * 119.99937 * 180.02562 * 19 17 16 22 22 H 1.48502 * 109.47327 * 89.99959 * 21 19 17 23 23 H 1.48500 * 109.47305 * 210.00365 * 21 19 17 24 24 H 1.48499 * 109.47178 * 330.00259 * 21 19 17 25 25 C 1.53034 * 109.54148 * 298.67542 * 13 12 11 26 26 H 1.08994 * 109.52884 * 181.30314 * 25 13 12 27 27 C 1.53001 * 109.47308 * 301.37226 * 25 13 12 28 28 C 1.46932 * 120.63162 * 179.72152 * 10 8 7 29 29 C 1.39098 * 120.60830 * 359.47368 * 7 6 5 30 30 H 1.09010 * 109.46798 * 60.00738 * 1 2 3 31 31 H 1.08999 * 109.47325 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.47395 * 300.01102 * 1 2 3 33 33 H 1.08000 * 120.35463 * 0.04581 * 4 3 2 34 34 H 1.07991 * 119.51246 * 179.97438 * 5 4 3 35 35 H 1.08999 * 109.58342 * 6.63440 * 11 10 8 36 36 H 1.08992 * 109.58972 * 246.20165 * 11 10 8 37 37 H 1.09006 * 109.49136 * 174.58946 * 12 11 10 38 38 H 1.08993 * 109.50088 * 294.65319 * 12 11 10 39 39 H 1.09000 * 109.47192 * 54.99978 * 15 13 12 40 40 H 1.09003 * 109.47215 * 175.00137 * 15 13 12 41 41 H 0.96998 * 119.99791 * 359.97438 * 16 15 13 42 42 H 0.97000 * 120.00160 * 180.02562 * 20 19 17 43 43 H 1.08996 * 109.46998 * 179.85078 * 27 25 13 44 44 H 1.09002 * 109.46621 * 299.84950 * 27 25 13 45 45 H 1.09002 * 109.46912 * 59.84973 * 27 25 13 46 46 H 1.09003 * 109.58561 * 353.37681 * 28 10 8 47 47 H 1.09002 * 109.58831 * 113.65301 * 28 10 8 48 48 H 1.08000 * 120.51095 * 180.23198 * 29 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0453 1.2095 0.0000 4 6 1.3038 2.3877 -0.0006 5 6 1.9643 3.6029 -0.0011 6 7 3.2793 3.6590 0.0041 7 6 4.0262 2.5610 -0.0004 8 6 5.5034 2.6779 0.0002 9 8 6.1859 1.7587 -0.4069 10 7 6.0900 3.8039 0.4523 11 6 5.2781 4.9266 0.9415 12 6 5.7526 5.3016 2.3490 13 6 7.2571 5.5801 2.3191 14 1 7.4631 6.3877 1.6166 15 6 7.7277 5.9883 3.7166 16 7 7.1051 7.2610 4.0893 17 6 7.3788 7.8269 5.3059 18 1 8.0540 7.3351 5.9905 19 6 6.7892 9.0330 5.6587 20 7 5.9668 9.6326 4.8241 21 14 7.1631 9.8053 7.3180 22 1 8.3401 10.7020 7.1927 23 1 5.9885 10.5909 7.7743 24 1 7.4580 8.7367 8.3061 25 6 8.0026 4.3186 1.8777 26 1 9.0756 4.5103 1.8788 27 6 7.6871 3.1753 2.8442 28 6 7.5537 3.9324 0.4649 29 6 3.4346 1.3021 0.0001 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3634 0.5140 0.8898 33 1 0.2243 2.3532 -0.0004 34 1 1.3927 4.5191 -0.0020 35 1 4.2295 4.6313 0.9760 36 1 5.3976 5.7812 0.2757 37 1 5.2240 6.1936 2.6854 38 1 5.5485 4.4781 3.0332 39 1 7.4420 5.2200 4.4350 40 1 8.8120 6.1005 3.7166 41 1 6.4990 7.7028 3.4742 42 1 5.5551 10.4756 5.0705 43 1 8.2160 2.2761 2.5283 44 1 8.0068 3.4506 3.8493 45 1 6.6139 2.9847 2.8436 46 1 8.0064 2.9812 0.1849 47 1 7.8588 4.7043 -0.2416 48 1 4.0435 0.4101 0.0002 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001184913003.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:31:14 Heat of formation + Delta-G solvation = -9.231720 kcal Electronic energy + Delta-G solvation = -29089.379667 eV Core-core repulsion = 25145.670188 eV Total energy + Delta-G solvation = -3943.709478 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.32355 -40.10458 -38.62999 -37.83840 -34.92264 -33.42964 -32.00612 -31.96342 -31.32525 -30.23825 -28.16824 -26.99932 -26.81014 -24.37865 -23.84961 -23.29621 -22.76681 -21.42342 -20.46687 -18.80396 -18.04509 -17.75114 -16.98336 -16.59033 -16.36401 -16.01186 -15.91385 -15.51920 -15.04884 -14.86413 -14.30587 -14.21392 -14.08673 -13.90899 -13.66631 -13.52633 -13.34212 -12.88876 -12.81352 -12.47709 -12.35565 -12.12399 -12.00566 -11.74928 -11.48584 -11.25547 -10.99107 -10.87827 -10.71604 -10.39377 -10.29365 -10.22074 -10.08370 -9.94646 -9.63317 -9.58089 -9.41130 -9.00093 -8.80847 -8.47757 -6.85979 -5.73093 -3.00541 0.35695 0.89382 2.47732 2.60424 3.04166 3.45405 3.50534 3.50690 3.52084 3.90612 4.18697 4.40029 4.58137 4.62099 4.62869 4.70308 4.73273 4.96008 5.00907 5.06845 5.11084 5.24388 5.38616 5.38985 5.48247 5.60614 5.60989 5.70090 5.78371 5.80041 5.89130 5.94462 5.98534 6.11772 6.18869 6.29485 6.33456 6.43627 6.48179 6.58535 6.64889 6.71658 6.77321 6.91723 7.02987 7.35380 7.49950 7.73653 8.08872 8.46557 9.57513 10.17030 10.51785 11.49981 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.014492 B = 0.002718 C = 0.002435 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1931.673860 B =10298.692056 C =11496.995793 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.308 6.308 3 C 0.164 3.836 4 C -0.244 4.244 5 C 0.133 3.867 6 N -0.469 5.469 7 C 0.122 3.878 8 C 0.570 3.430 9 O -0.540 6.540 10 N -0.579 5.579 11 C 0.075 3.925 12 C -0.128 4.128 13 C -0.090 4.090 14 H 0.071 0.929 15 C 0.158 3.842 16 N -0.732 5.732 17 C -0.236 4.236 18 H 0.069 0.931 19 C -0.015 4.015 20 N -0.934 5.934 21 Si 0.905 3.095 22 H -0.290 1.290 23 H -0.292 1.292 24 H -0.283 1.283 25 C -0.097 4.097 26 H 0.082 0.918 27 C -0.145 4.145 28 C 0.114 3.886 29 C -0.146 4.146 30 H 0.060 0.940 31 H 0.105 0.895 32 H 0.061 0.939 33 H 0.144 0.856 34 H 0.169 0.831 35 H 0.138 0.862 36 H 0.067 0.933 37 H 0.085 0.915 38 H 0.062 0.938 39 H 0.020 0.980 40 H 0.016 0.984 41 H 0.383 0.617 42 H 0.254 0.746 43 H 0.048 0.952 44 H 0.062 0.938 45 H 0.054 0.946 46 H 0.090 0.910 47 H 0.070 0.930 48 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.071 -17.910 -13.045 24.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.219 6.219 3 C 0.111 3.889 4 C -0.265 4.265 5 C -0.025 4.025 6 N -0.185 5.185 7 C -0.015 4.015 8 C 0.356 3.644 9 O -0.418 6.418 10 N -0.309 5.309 11 C -0.047 4.047 12 C -0.166 4.166 13 C -0.109 4.109 14 H 0.089 0.911 15 C 0.031 3.969 16 N -0.376 5.376 17 C -0.367 4.367 18 H 0.087 0.913 19 C -0.211 4.211 20 N -0.583 5.583 21 Si 0.737 3.263 22 H -0.218 1.218 23 H -0.218 1.218 24 H -0.209 1.209 25 C -0.117 4.117 26 H 0.100 0.900 27 C -0.202 4.202 28 C -0.008 4.008 29 C -0.168 4.168 30 H 0.078 0.922 31 H 0.123 0.877 32 H 0.079 0.921 33 H 0.162 0.838 34 H 0.186 0.814 35 H 0.154 0.846 36 H 0.086 0.914 37 H 0.104 0.896 38 H 0.081 0.919 39 H 0.038 0.962 40 H 0.034 0.966 41 H 0.217 0.783 42 H 0.064 0.936 43 H 0.067 0.933 44 H 0.081 0.919 45 H 0.073 0.927 46 H 0.108 0.892 47 H 0.088 0.912 48 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -10.130 -17.804 -13.084 24.307 hybrid contribution -0.765 0.154 0.826 1.136 sum -10.895 -17.650 -12.258 24.093 Atomic orbital electron populations 1.23189 0.77429 1.04637 1.01834 1.86096 1.22129 1.25967 1.87704 1.19201 0.92083 0.84888 0.92770 1.22400 1.01869 0.93123 1.09136 1.22794 0.89960 0.97466 0.92244 1.67735 1.06894 1.29860 1.13969 1.20995 0.94457 0.88681 0.97321 1.17773 0.85637 0.82464 0.78561 1.90771 1.63671 1.38895 1.48435 1.47962 1.07350 1.15338 1.60243 1.22958 0.98744 0.88122 0.94862 1.22005 0.96261 1.02491 0.95810 1.21324 0.94875 0.95967 0.98705 0.91094 1.20716 0.95256 0.88968 0.91970 1.42386 1.54898 1.21548 1.18752 1.19235 1.21774 1.02269 0.93414 0.91340 1.24714 1.00032 0.98008 0.98361 1.69654 1.34292 1.18550 1.35845 0.86209 0.77167 0.79134 0.83814 1.21799 1.21829 1.20853 1.21458 1.00278 0.95944 0.94008 0.90011 1.21863 1.01661 0.97156 0.99525 1.21770 0.79160 1.02657 0.97194 1.21323 0.92008 0.99482 1.03970 0.92169 0.87658 0.92069 0.83821 0.81389 0.84611 0.91421 0.89628 0.91904 0.96178 0.96612 0.78275 0.93605 0.93321 0.91950 0.92710 0.89162 0.91224 0.82892 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.10 9.84 101.05 0.99 1.10 16 2 O -0.31 -2.66 10.51 -18.96 -0.20 -2.86 16 3 C 0.16 1.58 6.73 -38.85 -0.26 1.32 16 4 C -0.24 -1.87 9.12 -39.19 -0.36 -2.23 16 5 C 0.13 1.15 11.17 -17.61 -0.20 0.96 16 6 N -0.47 -5.42 6.39 -9.87 -0.06 -5.49 16 7 C 0.12 1.56 6.44 -83.05 -0.53 1.03 16 8 C 0.57 8.37 7.61 -12.17 -0.09 8.28 16 9 O -0.54 -9.07 15.96 5.36 0.09 -8.99 16 10 N -0.58 -8.04 2.41 -173.75 -0.42 -8.46 16 11 C 0.07 1.03 5.99 -3.71 -0.02 1.00 16 12 C -0.13 -2.01 4.90 -26.61 -0.13 -2.14 16 13 C -0.09 -1.46 1.96 -90.58 -0.18 -1.63 16 14 H 0.07 1.20 8.14 -51.93 -0.42 0.77 16 15 C 0.16 3.20 5.18 -4.04 -0.02 3.18 16 16 N -0.73 -18.48 5.32 -59.90 -0.32 -18.80 16 17 C -0.24 -6.64 9.99 -15.06 -0.15 -6.79 16 18 H 0.07 1.89 7.83 -52.48 -0.41 1.48 16 19 C -0.02 -0.45 5.50 -17.43 -0.10 -0.54 16 20 N -0.93 -28.19 13.06 55.49 0.72 -27.46 16 21 Si 0.91 22.56 29.55 -169.99 -5.02 17.53 16 22 H -0.29 -7.22 7.11 56.52 0.40 -6.81 16 23 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 24 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 25 C -0.10 -1.34 2.72 -90.50 -0.25 -1.58 16 26 H 0.08 1.06 8.14 -51.93 -0.42 0.63 16 27 C -0.14 -2.01 8.38 37.16 0.31 -1.69 16 28 C 0.11 1.51 5.83 -3.71 -0.02 1.49 16 29 C -0.15 -1.70 9.59 -38.89 -0.37 -2.07 16 30 H 0.06 0.19 7.71 -51.92 -0.40 -0.21 16 31 H 0.11 0.27 8.14 -51.93 -0.42 -0.15 16 32 H 0.06 0.21 7.71 -51.93 -0.40 -0.19 16 33 H 0.14 0.66 6.45 -52.49 -0.34 0.32 16 34 H 0.17 0.96 8.06 -52.49 -0.42 0.53 16 35 H 0.14 1.81 4.00 -77.51 -0.31 1.50 16 36 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 37 H 0.09 1.53 7.15 -51.93 -0.37 1.16 16 38 H 0.06 1.02 6.33 -51.93 -0.33 0.69 16 39 H 0.02 0.42 6.74 -51.93 -0.35 0.07 16 40 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 41 H 0.38 10.08 6.85 -40.82 -0.28 9.80 16 42 H 0.25 7.42 8.31 -40.82 -0.34 7.08 16 43 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 44 H 0.06 0.89 6.59 -51.93 -0.34 0.55 16 45 H 0.05 0.80 5.97 -51.93 -0.31 0.49 16 46 H 0.09 1.22 7.01 -51.93 -0.36 0.85 16 47 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 48 H 0.15 1.78 7.81 -52.49 -0.41 1.37 16 LS Contribution 376.98 15.07 5.68 5.68 Total: -1.00 -33.55 376.98 -8.04 -41.59 By element: Atomic # 1 Polarization: 14.72 SS G_CDS: -7.13 Total: 7.59 kcal Atomic # 6 Polarization: 1.04 SS G_CDS: -1.38 Total: -0.34 kcal Atomic # 7 Polarization: -60.13 SS G_CDS: -0.08 Total: -60.21 kcal Atomic # 8 Polarization: -11.74 SS G_CDS: -0.11 Total: -11.85 kcal Atomic # 14 Polarization: 22.56 SS G_CDS: -5.02 Total: 17.53 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -33.55 -8.04 -41.59 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001184913003.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.363 kcal (2) G-P(sol) polarization free energy of solvation -33.554 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.191 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.041 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.595 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.232 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds