Wall clock time and date at job start Tue Mar 31 2020 17:31:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35750 * 117.00214 * 2 1 4 4 C 1.39211 * 120.81177 * 359.97061 * 3 2 1 5 5 C 1.38314 * 119.28640 * 180.02562 * 4 3 2 6 6 N 1.31619 * 120.97095 * 359.73928 * 5 4 3 7 7 C 1.32798 * 121.77673 * 0.52974 * 6 5 4 8 8 C 1.48183 * 119.69675 * 179.75168 * 7 6 5 9 9 O 1.21510 * 120.00635 * 202.54122 * 8 7 6 10 10 N 1.34779 * 119.99757 * 22.53651 * 8 7 6 11 11 C 1.46926 * 120.63261 * 359.69550 * 10 8 7 12 12 C 1.53199 * 108.77134 * 126.41063 * 11 10 8 13 13 C 1.53041 * 109.33458 * 54.62565 * 12 11 10 14 14 H 1.09003 * 109.46322 * 58.67310 * 13 12 11 15 15 C 1.53002 * 109.45674 * 178.62625 * 13 12 11 16 16 N 1.46504 * 109.47300 * 295.00024 * 15 13 12 17 17 C 1.36936 * 120.00214 * 179.97438 * 16 15 13 18 18 H 1.08004 * 119.99727 * 0.02562 * 17 16 15 19 19 C 1.38812 * 120.00025 * 179.97438 * 17 16 15 20 20 N 1.31617 * 120.00083 * 0.02562 * 19 17 16 21 21 Si 1.86797 * 119.99937 * 180.02562 * 19 17 16 22 22 H 1.48502 * 109.47327 * 89.99959 * 21 19 17 23 23 H 1.48500 * 109.47305 * 210.00365 * 21 19 17 24 24 H 1.48499 * 109.47178 * 330.00259 * 21 19 17 25 25 C 1.53034 * 109.54148 * 298.67542 * 13 12 11 26 26 H 1.08994 * 109.52884 * 181.30314 * 25 13 12 27 27 C 1.53001 * 109.47308 * 301.37226 * 25 13 12 28 28 C 1.46932 * 120.63162 * 179.72152 * 10 8 7 29 29 C 1.39098 * 120.60830 * 359.47368 * 7 6 5 30 30 H 1.09010 * 109.46798 * 60.00738 * 1 2 3 31 31 H 1.08999 * 109.47325 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.47395 * 300.01102 * 1 2 3 33 33 H 1.08000 * 120.35463 * 0.04581 * 4 3 2 34 34 H 1.07991 * 119.51246 * 179.97438 * 5 4 3 35 35 H 1.08999 * 109.58342 * 6.63440 * 11 10 8 36 36 H 1.08992 * 109.58972 * 246.20165 * 11 10 8 37 37 H 1.09006 * 109.49136 * 174.58946 * 12 11 10 38 38 H 1.08993 * 109.50088 * 294.65319 * 12 11 10 39 39 H 1.09000 * 109.47192 * 54.99978 * 15 13 12 40 40 H 1.09003 * 109.47215 * 175.00137 * 15 13 12 41 41 H 0.96998 * 119.99791 * 359.97438 * 16 15 13 42 42 H 0.97000 * 120.00160 * 180.02562 * 20 19 17 43 43 H 1.08996 * 109.46998 * 179.85078 * 27 25 13 44 44 H 1.09002 * 109.46621 * 299.84950 * 27 25 13 45 45 H 1.09002 * 109.46912 * 59.84973 * 27 25 13 46 46 H 1.09003 * 109.58561 * 353.37681 * 28 10 8 47 47 H 1.09002 * 109.58831 * 113.65301 * 28 10 8 48 48 H 1.08000 * 120.51095 * 180.23198 * 29 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0453 1.2095 0.0000 4 6 1.3038 2.3877 -0.0006 5 6 1.9643 3.6029 -0.0011 6 7 3.2793 3.6590 0.0041 7 6 4.0262 2.5610 -0.0004 8 6 5.5034 2.6779 0.0002 9 8 6.1859 1.7587 -0.4069 10 7 6.0900 3.8039 0.4523 11 6 5.2781 4.9266 0.9415 12 6 5.7526 5.3016 2.3490 13 6 7.2571 5.5801 2.3191 14 1 7.4631 6.3877 1.6166 15 6 7.7277 5.9883 3.7166 16 7 7.1051 7.2610 4.0893 17 6 7.3788 7.8269 5.3059 18 1 8.0540 7.3351 5.9905 19 6 6.7892 9.0330 5.6587 20 7 5.9668 9.6326 4.8241 21 14 7.1631 9.8053 7.3180 22 1 8.3401 10.7020 7.1927 23 1 5.9885 10.5909 7.7743 24 1 7.4580 8.7367 8.3061 25 6 8.0026 4.3186 1.8777 26 1 9.0756 4.5103 1.8788 27 6 7.6871 3.1753 2.8442 28 6 7.5537 3.9324 0.4649 29 6 3.4346 1.3021 0.0001 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3634 0.5140 0.8898 33 1 0.2243 2.3532 -0.0004 34 1 1.3927 4.5191 -0.0020 35 1 4.2295 4.6313 0.9760 36 1 5.3976 5.7812 0.2757 37 1 5.2240 6.1936 2.6854 38 1 5.5485 4.4781 3.0332 39 1 7.4420 5.2200 4.4350 40 1 8.8120 6.1005 3.7166 41 1 6.4990 7.7028 3.4742 42 1 5.5551 10.4756 5.0705 43 1 8.2160 2.2761 2.5283 44 1 8.0068 3.4506 3.8493 45 1 6.6139 2.9847 2.8436 46 1 8.0064 2.9812 0.1849 47 1 7.8588 4.7043 -0.2416 48 1 4.0435 0.4101 0.0002 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001184913003.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:31:13 Heat of formation + Delta-G solvation = -30.380965 kcal Electronic energy + Delta-G solvation = -29090.296767 eV Core-core repulsion = 25145.670188 eV Total energy + Delta-G solvation = -3944.626579 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.18451 -41.05904 -39.51768 -38.91593 -36.57285 -34.89526 -33.34639 -32.75662 -32.29815 -31.92662 -28.71472 -28.43199 -27.95210 -25.75912 -24.78967 -24.58546 -23.94616 -22.82819 -21.52325 -19.88109 -19.33909 -18.79506 -18.47539 -17.40058 -17.06305 -16.93241 -16.83351 -16.75677 -16.47726 -15.84328 -15.60249 -15.49054 -15.29387 -15.03397 -14.86311 -14.78704 -14.56858 -14.27675 -13.89081 -13.60980 -13.50649 -13.37894 -12.96521 -12.81516 -12.68041 -12.60440 -12.39834 -12.27848 -12.16166 -12.02334 -11.89444 -11.58170 -11.46166 -11.36101 -11.21842 -10.89513 -10.39633 -10.21857 -9.85333 -9.62722 -8.94662 -7.92443 -5.20142 -0.45565 0.16193 1.48060 1.49492 1.57182 1.57821 1.75751 2.21574 2.57703 2.67765 3.00964 3.40690 3.56171 3.65404 3.74445 3.81680 3.87544 3.95031 4.03040 4.16635 4.27319 4.32778 4.35993 4.38469 4.45693 4.51529 4.57331 4.65277 4.67850 4.74205 4.75962 4.80798 4.85877 4.92297 5.00452 5.03146 5.14198 5.20467 5.20776 5.23647 5.30502 5.46059 5.51884 5.57040 5.71626 6.12893 6.29326 6.30596 6.64907 7.01181 7.36805 8.13682 8.38050 9.31031 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.014492 B = 0.002718 C = 0.002435 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1931.673860 B =10298.692056 C =11496.995793 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.012 3.988 2 O -0.326 6.326 3 C 0.161 3.839 4 C -0.226 4.226 5 C 0.130 3.870 6 N -0.487 5.487 7 C 0.101 3.899 8 C 0.566 3.434 9 O -0.569 6.569 10 N -0.579 5.579 11 C 0.085 3.915 12 C -0.118 4.118 13 C -0.080 4.080 14 H 0.067 0.933 15 C 0.160 3.840 16 N -0.742 5.742 17 C -0.244 4.244 18 H 0.071 0.929 19 C -0.074 4.074 20 N -0.967 5.967 21 Si 0.971 3.029 22 H -0.288 1.288 23 H -0.294 1.294 24 H -0.272 1.272 25 C -0.089 4.089 26 H 0.096 0.904 27 C -0.140 4.140 28 C 0.115 3.885 29 C -0.161 4.161 30 H 0.076 0.924 31 H 0.121 0.879 32 H 0.074 0.926 33 H 0.182 0.818 34 H 0.201 0.799 35 H 0.147 0.853 36 H 0.071 0.929 37 H 0.061 0.939 38 H 0.055 0.945 39 H 0.018 0.982 40 H 0.016 0.984 41 H 0.375 0.625 42 H 0.251 0.749 43 H 0.059 0.941 44 H 0.055 0.945 45 H 0.043 0.957 46 H 0.090 0.910 47 H 0.083 0.917 48 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.452 -18.372 -13.183 25.814 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 O -0.237 6.237 3 C 0.108 3.892 4 C -0.247 4.247 5 C -0.027 4.027 6 N -0.203 5.203 7 C -0.034 4.034 8 C 0.354 3.646 9 O -0.449 6.449 10 N -0.308 5.308 11 C -0.037 4.037 12 C -0.157 4.157 13 C -0.098 4.098 14 H 0.085 0.915 15 C 0.033 3.967 16 N -0.385 5.385 17 C -0.376 4.376 18 H 0.089 0.911 19 C -0.266 4.266 20 N -0.618 5.618 21 Si 0.800 3.200 22 H -0.215 1.215 23 H -0.220 1.220 24 H -0.197 1.197 25 C -0.108 4.108 26 H 0.114 0.886 27 C -0.197 4.197 28 C -0.007 4.007 29 C -0.183 4.183 30 H 0.094 0.906 31 H 0.140 0.860 32 H 0.092 0.908 33 H 0.199 0.801 34 H 0.218 0.782 35 H 0.163 0.837 36 H 0.089 0.911 37 H 0.080 0.920 38 H 0.074 0.926 39 H 0.036 0.964 40 H 0.034 0.966 41 H 0.208 0.792 42 H 0.060 0.940 43 H 0.078 0.922 44 H 0.074 0.926 45 H 0.062 0.938 46 H 0.108 0.892 47 H 0.101 0.899 48 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -11.498 -18.299 -13.220 25.334 hybrid contribution -0.437 0.199 0.847 0.974 sum -11.935 -18.099 -12.372 24.962 Atomic orbital electron populations 1.23546 0.75065 1.06339 1.03193 1.86087 1.24568 1.25627 1.87428 1.19259 0.91522 0.86076 0.92391 1.22763 1.03584 0.91764 1.06543 1.23389 0.89070 0.99245 0.91019 1.67582 1.08409 1.29457 1.14884 1.20708 0.93524 0.89566 0.99634 1.18114 0.86650 0.81985 0.77867 1.90737 1.64652 1.39732 1.49780 1.48000 1.07612 1.15233 1.59986 1.22900 0.99293 0.88168 0.93350 1.21866 0.95684 1.01027 0.97079 1.21208 0.95448 0.97033 0.96160 0.91473 1.20834 0.94832 0.86837 0.94172 1.42563 1.55012 1.22968 1.17926 1.19606 1.21220 1.02414 0.94394 0.91098 1.25510 1.00419 0.98770 1.01917 1.69802 1.35525 1.18823 1.37613 0.85180 0.76686 0.78228 0.79905 1.21479 1.22030 1.19728 1.21402 1.00708 0.94430 0.94303 0.88613 1.21805 1.01033 0.97670 0.99195 1.21800 0.78968 1.03050 0.96879 1.21302 0.93337 0.98718 1.04949 0.90575 0.86037 0.90784 0.80094 0.78208 0.83718 0.91069 0.92003 0.92601 0.96408 0.96608 0.79203 0.93989 0.92180 0.92594 0.93815 0.89188 0.89930 0.84062 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.07 9.84 113.37 1.12 1.19 16 2 O -0.33 -5.13 10.51 -90.75 -0.95 -6.08 16 3 C 0.16 2.89 6.73 22.74 0.15 3.04 16 4 C -0.23 -2.81 9.12 22.52 0.21 -2.60 16 5 C 0.13 1.93 11.17 84.74 0.95 2.88 16 6 N -0.49 -10.79 6.39 -185.15 -1.18 -11.98 16 7 C 0.10 2.60 6.44 41.85 0.27 2.87 16 8 C 0.57 16.88 7.61 86.89 0.66 17.54 16 9 O -0.57 -19.59 15.96 -3.75 -0.06 -19.65 16 10 N -0.58 -16.01 2.41 -821.91 -1.98 -17.99 16 11 C 0.08 2.30 5.99 86.36 0.52 2.82 16 12 C -0.12 -3.77 4.90 30.67 0.15 -3.61 16 13 C -0.08 -2.57 1.96 -10.77 -0.02 -2.59 16 14 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 15 C 0.16 6.47 5.18 86.38 0.45 6.92 16 16 N -0.74 -37.91 5.32 -343.43 -1.83 -39.74 16 17 C -0.24 -13.82 9.99 84.03 0.84 -12.98 16 18 H 0.07 3.89 7.83 -2.91 -0.02 3.87 16 19 C -0.07 -4.26 5.50 84.86 0.47 -3.79 16 20 N -0.97 -58.93 13.06 21.65 0.28 -58.65 16 21 Si 0.97 46.39 29.55 68.60 2.03 48.42 16 22 H -0.29 -13.52 7.11 99.48 0.71 -12.82 16 23 H -0.29 -14.03 7.11 99.48 0.71 -13.32 16 24 H -0.27 -12.40 7.11 99.48 0.71 -11.69 16 25 C -0.09 -2.38 2.72 -10.72 -0.03 -2.41 16 26 H 0.10 2.33 8.14 -2.39 -0.02 2.31 16 27 C -0.14 -3.82 8.38 71.98 0.60 -3.21 16 28 C 0.11 2.95 5.83 86.36 0.50 3.46 16 29 C -0.16 -3.77 9.59 22.72 0.22 -3.56 16 30 H 0.08 0.21 7.71 -2.38 -0.02 0.19 16 31 H 0.12 0.30 8.14 -2.39 -0.02 0.28 16 32 H 0.07 0.25 7.71 -2.39 -0.02 0.23 16 33 H 0.18 0.82 6.45 -2.91 -0.02 0.80 16 34 H 0.20 1.57 8.06 -2.92 -0.02 1.54 16 35 H 0.15 3.80 4.00 -52.89 -0.21 3.58 16 36 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 37 H 0.06 2.27 7.15 -2.38 -0.02 2.26 16 38 H 0.06 1.84 6.33 -2.39 -0.02 1.83 16 39 H 0.02 0.74 6.74 -2.39 -0.02 0.73 16 40 H 0.02 0.65 8.14 -2.39 -0.02 0.63 16 41 H 0.38 20.17 6.85 -92.71 -0.63 19.54 16 42 H 0.25 14.82 8.31 -92.71 -0.77 14.05 16 43 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 44 H 0.06 1.58 6.59 -2.39 -0.02 1.56 16 45 H 0.04 1.28 5.97 -2.39 -0.01 1.27 16 46 H 0.09 2.37 7.01 -2.39 -0.02 2.36 16 47 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 48 H 0.14 3.50 7.81 -2.91 -0.02 3.47 16 Total: -1.00 -73.07 376.98 3.50 -69.57 By element: Atomic # 1 Polarization: 30.01 SS G_CDS: 0.15 Total: 30.15 kcal Atomic # 6 Polarization: -1.10 SS G_CDS: 7.05 Total: 5.95 kcal Atomic # 7 Polarization: -123.65 SS G_CDS: -4.71 Total: -128.36 kcal Atomic # 8 Polarization: -24.71 SS G_CDS: -1.01 Total: -25.73 kcal Atomic # 14 Polarization: 46.39 SS G_CDS: 2.03 Total: 48.42 kcal Total: -73.07 3.50 -69.57 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001184913003.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.187 kcal (2) G-P(sol) polarization free energy of solvation -73.067 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.880 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.499 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.567 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.381 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds