Wall clock time and date at job start Tue Mar 31 2020 17:32:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35431 * 116.99920 * 2 1 4 4 N 1.32231 * 119.79861 * 359.97438 * 3 2 1 5 5 C 1.31887 * 121.79819 * 180.02562 * 4 3 2 6 6 C 1.38356 * 121.18499 * 0.02562 * 5 4 3 7 7 C 1.38336 * 119.45629 * 359.74068 * 6 5 4 8 8 C 1.39990 * 118.35022 * 0.49954 * 7 6 5 9 9 C 1.47522 * 120.59461 * 179.78497 * 8 7 6 10 10 O 1.21592 * 119.99689 * 233.98079 * 9 8 7 11 11 N 1.34779 * 120.00625 * 53.98015 * 9 8 7 12 12 C 1.46920 * 120.62562 * 355.78953 * 11 9 8 13 13 C 1.53195 * 108.77623 * 126.36763 * 12 11 9 14 14 C 1.53046 * 109.33719 * 54.61779 * 13 12 11 15 15 H 1.08994 * 109.45941 * 58.67160 * 14 13 12 16 16 C 1.52998 * 109.45701 * 178.63200 * 14 13 12 17 17 N 1.46501 * 109.47301 * 294.99904 * 16 14 13 18 18 C 1.36938 * 120.00002 * 180.02562 * 17 16 14 19 19 H 1.07995 * 120.00256 * 0.02562 * 18 17 16 20 20 C 1.38817 * 119.99784 * 179.97438 * 18 17 16 21 21 N 1.31611 * 119.99857 * 180.02562 * 20 18 17 22 22 Si 1.86795 * 120.00081 * 359.97438 * 20 18 17 23 23 H 1.48500 * 109.47060 * 89.99670 * 22 20 18 24 24 H 1.48500 * 109.47480 * 209.99898 * 22 20 18 25 25 H 1.48506 * 109.47067 * 329.99930 * 22 20 18 26 26 C 1.53036 * 109.53359 * 298.68146 * 14 13 12 27 27 H 1.08993 * 109.50245 * 301.34740 * 26 14 13 28 28 C 1.53005 * 109.49360 * 181.29022 * 26 14 13 29 29 C 1.46920 * 120.63272 * 175.76193 * 11 9 8 30 30 H 1.08995 * 109.47585 * 59.99079 * 1 2 3 31 31 H 1.08999 * 109.47212 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.46512 * 299.99179 * 1 2 3 33 33 H 1.08000 * 119.40422 * 179.97438 * 5 4 3 34 34 H 1.08001 * 120.26843 * 179.97438 * 6 5 4 35 35 H 1.07998 * 120.82270 * 180.25746 * 7 6 5 36 36 H 1.09000 * 109.59331 * 6.57502 * 12 11 9 37 37 H 1.09002 * 109.70180 * 246.22238 * 12 11 9 38 38 H 1.09003 * 109.49850 * 174.57897 * 13 12 11 39 39 H 1.08994 * 109.49699 * 294.64936 * 13 12 11 40 40 H 1.09004 * 109.47534 * 54.99816 * 16 14 13 41 41 H 1.09005 * 109.47447 * 174.99484 * 16 14 13 42 42 H 0.97001 * 120.00074 * 359.97438 * 17 16 14 43 43 H 0.96998 * 120.00060 * 180.02562 * 21 20 18 44 44 H 1.09006 * 109.46785 * 300.12618 * 28 26 14 45 45 H 1.08994 * 109.47423 * 60.12870 * 28 26 14 46 46 H 1.08998 * 109.47109 * 180.13582 * 28 26 14 47 47 H 1.09005 * 109.58784 * 353.42290 * 29 11 9 48 48 H 1.09003 * 109.58697 * 113.84322 * 29 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0439 1.2067 0.0000 4 7 1.3198 2.3131 -0.0005 5 6 1.8771 3.5084 -0.0010 6 6 3.2526 3.6575 -0.0016 7 6 4.0588 2.5333 0.0038 8 6 3.4449 1.2752 -0.0010 9 6 4.2570 0.0436 -0.0003 10 8 4.0779 -0.8032 -0.8544 11 7 5.1974 -0.1432 0.9469 12 6 5.4891 0.9092 1.9298 13 6 5.3742 0.3151 3.3371 14 6 6.2805 -0.9136 3.4441 15 1 7.3099 -0.6250 3.2320 16 6 6.1939 -1.4891 4.8590 17 7 6.7388 -0.5211 5.8142 18 6 6.7668 -0.8191 7.1505 19 1 6.3876 -1.7679 7.5002 20 6 7.2836 0.0979 8.0554 21 7 7.3109 -0.1887 9.3397 22 14 7.9414 1.7381 7.4503 23 1 6.8443 2.7389 7.4423 24 1 9.0262 2.2000 8.3533 25 1 8.4768 1.5795 6.0743 26 6 5.8298 -1.9714 2.4342 27 1 4.7927 -2.2433 2.6305 28 6 6.7162 -3.2117 2.5640 29 6 5.9498 -1.4032 1.0167 30 1 -0.3634 0.5139 -0.8898 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3632 0.5137 0.8901 33 1 1.2485 4.3866 -0.0019 34 1 3.6934 4.6435 -0.0024 35 1 5.1349 2.6240 0.0077 36 1 4.7730 1.7232 1.8171 37 1 6.4995 1.2874 1.7742 38 1 5.6816 1.0589 4.0723 39 1 4.3413 0.0227 3.5254 40 1 5.1520 -1.6947 5.1046 41 1 6.7687 -2.4138 4.9110 42 1 7.0804 0.3307 5.5000 43 1 7.6717 0.4522 9.9721 44 1 7.7534 -2.9391 2.3687 45 1 6.6304 -3.6156 3.5728 46 1 6.3964 -3.9639 1.8430 47 1 5.5376 -2.1151 0.3015 48 1 6.9985 -1.2158 0.7856 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001185071647.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:32:13 Heat of formation + Delta-G solvation = -18.090806 kcal Electronic energy + Delta-G solvation = -29487.108658 eV Core-core repulsion = 25543.015021 eV Total energy + Delta-G solvation = -3944.093637 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.33755 -39.94445 -38.21049 -37.98963 -35.17000 -33.93932 -32.76680 -32.02611 -31.19700 -30.69508 -27.70434 -27.24940 -26.85817 -24.80753 -23.39141 -23.32517 -22.47778 -21.27732 -20.37009 -19.52279 -18.62838 -17.73880 -17.43294 -17.31601 -16.47962 -16.04597 -15.59832 -15.15307 -14.87390 -14.59461 -14.42223 -14.37863 -14.19830 -13.75018 -13.73107 -13.41518 -13.26325 -13.09361 -12.87205 -12.69914 -12.46516 -12.06127 -12.00582 -11.92258 -11.74020 -11.52201 -11.34262 -10.99486 -10.89997 -10.53651 -10.49004 -10.45794 -10.20186 -10.11650 -10.05391 -9.70761 -9.59091 -8.90457 -8.89076 -8.66157 -7.22464 -5.77720 -3.12735 0.46924 0.86537 2.47164 2.75126 2.84186 3.33845 3.35419 3.37745 3.42425 3.86917 4.27040 4.40352 4.57096 4.60679 4.70768 4.76008 4.81487 4.88947 4.98208 5.01824 5.05103 5.06292 5.20238 5.32175 5.36114 5.40733 5.48597 5.52674 5.61141 5.64181 5.70493 5.72326 5.77831 5.80827 5.90344 5.94108 6.13140 6.18409 6.22011 6.34617 6.38710 6.46753 6.73692 6.81902 6.87339 7.23108 7.41247 7.99326 8.01974 8.41513 9.20827 9.93077 10.13251 11.41012 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.012607 B = 0.003306 C = 0.002964 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2220.426398 B = 8467.520017 C = 9443.974124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.290 6.290 3 C 0.364 3.636 4 N -0.541 5.541 5 C 0.160 3.840 6 C -0.216 4.216 7 C -0.012 4.012 8 C -0.198 4.198 9 C 0.574 3.426 10 O -0.528 6.528 11 N -0.602 5.602 12 C 0.098 3.902 13 C -0.127 4.127 14 C -0.093 4.093 15 H 0.072 0.928 16 C 0.161 3.839 17 N -0.755 5.755 18 C -0.242 4.242 19 H 0.089 0.911 20 C 0.003 3.997 21 N -0.935 5.935 22 Si 0.883 3.117 23 H -0.284 1.284 24 H -0.291 1.291 25 H -0.277 1.277 26 C -0.097 4.097 27 H 0.075 0.925 28 C -0.147 4.147 29 C 0.120 3.880 30 H 0.060 0.940 31 H 0.099 0.901 32 H 0.061 0.939 33 H 0.165 0.835 34 H 0.145 0.855 35 H 0.147 0.853 36 H 0.084 0.916 37 H 0.072 0.928 38 H 0.081 0.919 39 H 0.068 0.932 40 H 0.025 0.975 41 H 0.033 0.967 42 H 0.359 0.641 43 H 0.259 0.741 44 H 0.056 0.944 45 H 0.070 0.930 46 H 0.053 0.947 47 H 0.092 0.908 48 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.021 6.085 -22.784 25.249 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.195 6.195 3 C 0.185 3.815 4 N -0.265 5.265 5 C 0.003 3.997 6 C -0.236 4.236 7 C -0.038 4.038 8 C -0.204 4.204 9 C 0.361 3.639 10 O -0.404 6.404 11 N -0.334 5.334 12 C -0.024 4.024 13 C -0.165 4.165 14 C -0.112 4.112 15 H 0.090 0.910 16 C 0.034 3.966 17 N -0.401 5.401 18 C -0.372 4.372 19 H 0.107 0.893 20 C -0.193 4.193 21 N -0.583 5.583 22 Si 0.714 3.286 23 H -0.211 1.211 24 H -0.217 1.217 25 H -0.204 1.204 26 C -0.117 4.117 27 H 0.093 0.907 28 C -0.205 4.205 29 C -0.002 4.002 30 H 0.079 0.921 31 H 0.117 0.883 32 H 0.080 0.920 33 H 0.182 0.818 34 H 0.163 0.837 35 H 0.165 0.835 36 H 0.102 0.898 37 H 0.091 0.909 38 H 0.100 0.900 39 H 0.086 0.914 40 H 0.043 0.957 41 H 0.051 0.949 42 H 0.192 0.808 43 H 0.069 0.931 44 H 0.075 0.925 45 H 0.088 0.912 46 H 0.072 0.928 47 H 0.110 0.890 48 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -9.956 5.107 -23.027 25.602 hybrid contribution 1.148 1.585 -0.077 1.958 sum -8.808 6.692 -23.105 25.616 Atomic orbital electron populations 1.22946 0.76806 1.03415 1.02479 1.86343 1.23129 1.23712 1.86319 1.19698 0.87804 0.85137 0.88892 1.67438 1.40275 0.98672 1.20080 1.22644 0.93098 0.93691 0.90261 1.21941 0.94751 0.99903 1.07010 1.21631 1.00972 0.90134 0.91054 1.19839 0.91724 0.95358 1.13518 1.17789 0.79166 0.85627 0.81363 1.90787 1.67920 1.44610 1.37091 1.48020 1.37724 1.17254 1.30441 1.22059 1.01480 0.90111 0.88784 1.21946 1.01022 0.98555 0.95019 1.21395 0.99236 0.94513 0.96034 0.90963 1.20737 0.96932 0.92671 0.86289 1.42729 1.75425 1.17699 1.04249 1.19072 1.34270 1.02658 0.81207 0.89286 1.24672 1.01281 0.98151 0.95147 1.69697 1.51909 1.36062 1.00667 0.86561 0.78818 0.85425 0.77824 1.21095 1.21736 1.20351 1.21451 1.00878 0.95591 0.93735 0.90656 1.21836 0.99379 0.96591 1.02690 1.21732 0.95676 0.85022 0.97803 0.92117 0.88300 0.92023 0.81795 0.83686 0.83505 0.89764 0.90932 0.90001 0.91357 0.95687 0.94928 0.80781 0.93084 0.92493 0.91151 0.92822 0.88997 0.91336 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.36 10.38 101.05 1.05 1.41 16 2 O -0.29 -3.90 9.70 -20.55 -0.20 -4.10 16 3 C 0.36 4.67 7.50 -16.61 -0.12 4.54 16 4 N -0.54 -5.94 9.21 -12.98 -0.12 -6.06 16 5 C 0.16 1.27 11.17 -17.48 -0.20 1.07 16 6 C -0.22 -1.52 10.09 -39.50 -0.40 -1.92 16 7 C -0.01 -0.11 7.56 -38.89 -0.29 -0.40 16 8 C -0.20 -2.42 4.91 -104.69 -0.51 -2.94 16 9 C 0.57 8.10 6.88 -12.47 -0.09 8.02 16 10 O -0.53 -9.14 16.21 2.72 0.04 -9.09 16 11 N -0.60 -7.49 2.97 -174.01 -0.52 -8.01 16 12 C 0.10 1.09 5.56 -3.71 -0.02 1.06 16 13 C -0.13 -1.74 5.25 -26.61 -0.14 -1.88 16 14 C -0.09 -1.34 1.73 -90.58 -0.16 -1.50 16 15 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 16 C 0.16 3.01 5.41 -4.04 -0.02 2.98 16 17 N -0.76 -17.47 5.12 -59.91 -0.31 -17.78 16 18 C -0.24 -6.81 10.47 -15.06 -0.16 -6.96 16 19 H 0.09 2.70 8.06 -52.49 -0.42 2.27 16 20 C 0.00 0.09 5.50 -17.43 -0.10 -0.01 16 21 N -0.94 -29.30 13.97 55.49 0.78 -28.53 16 22 Si 0.88 21.65 27.73 -169.99 -4.71 16.94 16 23 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 24 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 25 H -0.28 -6.31 6.52 56.52 0.37 -5.94 16 26 C -0.10 -1.22 2.41 -90.50 -0.22 -1.44 16 27 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 28 C -0.15 -1.71 8.82 37.16 0.33 -1.38 16 29 C 0.12 1.44 5.71 -3.72 -0.02 1.42 16 30 H 0.06 0.52 8.10 -51.93 -0.42 0.10 16 31 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.06 0.55 8.10 -51.93 -0.42 0.13 16 33 H 0.16 0.75 8.06 -52.49 -0.42 0.32 16 34 H 0.15 0.59 8.06 -52.49 -0.42 0.16 16 35 H 0.15 0.99 7.41 -52.49 -0.39 0.60 16 36 H 0.08 0.84 4.72 -51.93 -0.24 0.59 16 37 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 38 H 0.08 1.21 7.15 -51.93 -0.37 0.84 16 39 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16 40 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 41 H 0.03 0.62 6.14 -51.93 -0.32 0.30 16 42 H 0.36 8.01 4.71 -40.82 -0.19 7.82 16 43 H 0.26 7.72 8.31 -40.82 -0.34 7.38 16 44 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 45 H 0.07 0.89 6.30 -51.93 -0.33 0.56 16 46 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 47 H 0.09 1.19 7.03 -51.93 -0.36 0.82 16 48 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 LS Contribution 380.41 15.07 5.73 5.73 Total: -1.00 -35.41 380.41 -7.66 -43.08 By element: Atomic # 1 Polarization: 13.03 SS G_CDS: -7.29 Total: 5.73 kcal Atomic # 6 Polarization: 3.16 SS G_CDS: -1.07 Total: 2.09 kcal Atomic # 7 Polarization: -60.21 SS G_CDS: -0.17 Total: -60.38 kcal Atomic # 8 Polarization: -13.04 SS G_CDS: -0.16 Total: -13.20 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -4.71 Total: 16.94 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -35.41 -7.66 -43.08 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001185071647.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.986 kcal (2) G-P(sol) polarization free energy of solvation -35.412 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.426 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.077 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.091 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds