Wall clock time and date at job start Tue Mar 31 2020 17:32:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35431 * 116.99920 * 2 1 4 4 N 1.32231 * 119.79861 * 359.97438 * 3 2 1 5 5 C 1.31887 * 121.79819 * 180.02562 * 4 3 2 6 6 C 1.38356 * 121.18499 * 0.02562 * 5 4 3 7 7 C 1.38336 * 119.45629 * 359.74068 * 6 5 4 8 8 C 1.39990 * 118.35022 * 0.49954 * 7 6 5 9 9 C 1.47522 * 120.59461 * 179.78497 * 8 7 6 10 10 O 1.21592 * 119.99689 * 233.98079 * 9 8 7 11 11 N 1.34779 * 120.00625 * 53.98015 * 9 8 7 12 12 C 1.46920 * 120.62562 * 355.78953 * 11 9 8 13 13 C 1.53195 * 108.77623 * 126.36763 * 12 11 9 14 14 C 1.53046 * 109.33719 * 54.61779 * 13 12 11 15 15 H 1.08994 * 109.45941 * 58.67160 * 14 13 12 16 16 C 1.52998 * 109.45701 * 178.63200 * 14 13 12 17 17 N 1.46501 * 109.47301 * 294.99904 * 16 14 13 18 18 C 1.36938 * 120.00002 * 180.02562 * 17 16 14 19 19 H 1.07995 * 120.00256 * 0.02562 * 18 17 16 20 20 C 1.38817 * 119.99784 * 179.97438 * 18 17 16 21 21 N 1.31611 * 119.99857 * 180.02562 * 20 18 17 22 22 Si 1.86795 * 120.00081 * 359.97438 * 20 18 17 23 23 H 1.48500 * 109.47060 * 89.99670 * 22 20 18 24 24 H 1.48500 * 109.47480 * 209.99898 * 22 20 18 25 25 H 1.48506 * 109.47067 * 329.99930 * 22 20 18 26 26 C 1.53036 * 109.53359 * 298.68146 * 14 13 12 27 27 H 1.08993 * 109.50245 * 301.34740 * 26 14 13 28 28 C 1.53005 * 109.49360 * 181.29022 * 26 14 13 29 29 C 1.46920 * 120.63272 * 175.76193 * 11 9 8 30 30 H 1.08995 * 109.47585 * 59.99079 * 1 2 3 31 31 H 1.08999 * 109.47212 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.46512 * 299.99179 * 1 2 3 33 33 H 1.08000 * 119.40422 * 179.97438 * 5 4 3 34 34 H 1.08001 * 120.26843 * 179.97438 * 6 5 4 35 35 H 1.07998 * 120.82270 * 180.25746 * 7 6 5 36 36 H 1.09000 * 109.59331 * 6.57502 * 12 11 9 37 37 H 1.09002 * 109.70180 * 246.22238 * 12 11 9 38 38 H 1.09003 * 109.49850 * 174.57897 * 13 12 11 39 39 H 1.08994 * 109.49699 * 294.64936 * 13 12 11 40 40 H 1.09004 * 109.47534 * 54.99816 * 16 14 13 41 41 H 1.09005 * 109.47447 * 174.99484 * 16 14 13 42 42 H 0.97001 * 120.00074 * 359.97438 * 17 16 14 43 43 H 0.96998 * 120.00060 * 180.02562 * 21 20 18 44 44 H 1.09006 * 109.46785 * 300.12618 * 28 26 14 45 45 H 1.08994 * 109.47423 * 60.12870 * 28 26 14 46 46 H 1.08998 * 109.47109 * 180.13582 * 28 26 14 47 47 H 1.09005 * 109.58784 * 353.42290 * 29 11 9 48 48 H 1.09003 * 109.58697 * 113.84322 * 29 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0439 1.2067 0.0000 4 7 1.3198 2.3131 -0.0005 5 6 1.8771 3.5084 -0.0010 6 6 3.2526 3.6575 -0.0016 7 6 4.0588 2.5333 0.0038 8 6 3.4449 1.2752 -0.0010 9 6 4.2570 0.0436 -0.0003 10 8 4.0779 -0.8032 -0.8544 11 7 5.1974 -0.1432 0.9469 12 6 5.4891 0.9092 1.9298 13 6 5.3742 0.3151 3.3371 14 6 6.2805 -0.9136 3.4441 15 1 7.3099 -0.6250 3.2320 16 6 6.1939 -1.4891 4.8590 17 7 6.7388 -0.5211 5.8142 18 6 6.7668 -0.8191 7.1505 19 1 6.3876 -1.7679 7.5002 20 6 7.2836 0.0979 8.0554 21 7 7.3109 -0.1887 9.3397 22 14 7.9414 1.7381 7.4503 23 1 6.8443 2.7389 7.4423 24 1 9.0262 2.2000 8.3533 25 1 8.4768 1.5795 6.0743 26 6 5.8298 -1.9714 2.4342 27 1 4.7927 -2.2433 2.6305 28 6 6.7162 -3.2117 2.5640 29 6 5.9498 -1.4032 1.0167 30 1 -0.3634 0.5139 -0.8898 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3632 0.5137 0.8901 33 1 1.2485 4.3866 -0.0019 34 1 3.6934 4.6435 -0.0024 35 1 5.1349 2.6240 0.0077 36 1 4.7730 1.7232 1.8171 37 1 6.4995 1.2874 1.7742 38 1 5.6816 1.0589 4.0723 39 1 4.3413 0.0227 3.5254 40 1 5.1520 -1.6947 5.1046 41 1 6.7687 -2.4138 4.9110 42 1 7.0804 0.3307 5.5000 43 1 7.6717 0.4522 9.9721 44 1 7.7534 -2.9391 2.3687 45 1 6.6304 -3.6156 3.5728 46 1 6.3964 -3.9639 1.8430 47 1 5.5376 -2.1151 0.3015 48 1 6.9985 -1.2158 0.7856 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001185071647.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:32:11 Heat of formation + Delta-G solvation = -43.663971 kcal Electronic energy + Delta-G solvation = -29488.217594 eV Core-core repulsion = 25543.015021 eV Total energy + Delta-G solvation = -3945.202573 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 1.80 seconds Orbital eigenvalues (eV) -42.15568 -40.90090 -39.17703 -38.95958 -36.70051 -35.20940 -33.87334 -33.31324 -32.35659 -31.89445 -28.72954 -28.43977 -27.75163 -25.88693 -24.82211 -24.06247 -23.63898 -22.70861 -21.46473 -20.58387 -19.61927 -19.39025 -18.38860 -18.18823 -17.38429 -16.96099 -16.65134 -16.27082 -16.22074 -15.83623 -15.60454 -15.45236 -15.18770 -14.96147 -14.65757 -14.53040 -14.41655 -14.32481 -14.00714 -13.93472 -13.45921 -13.25119 -13.14937 -12.94975 -12.84796 -12.77504 -12.70306 -12.26884 -12.16429 -12.01265 -11.84647 -11.66656 -11.54264 -11.34048 -11.25890 -10.96312 -10.86080 -10.58162 -9.76128 -9.55313 -9.26753 -8.01240 -5.35082 -0.23894 0.19417 1.38453 1.44172 1.49006 1.51738 1.92555 2.02744 2.50788 2.66913 3.16600 3.30023 3.45651 3.52763 3.69790 3.80379 3.84034 3.93683 3.97125 4.03990 4.20201 4.25997 4.34389 4.35040 4.35292 4.44609 4.49838 4.59407 4.65798 4.66547 4.71422 4.77891 4.80877 4.88701 4.97307 5.05654 5.05836 5.07636 5.18281 5.23207 5.34195 5.39246 5.46561 5.56868 5.76942 6.11241 6.22345 6.27400 6.71281 7.01791 7.09750 7.84931 8.06632 9.20690 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.012607 B = 0.003306 C = 0.002964 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2220.426398 B = 8467.520017 C = 9443.974124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.322 6.322 3 C 0.338 3.662 4 N -0.556 5.556 5 C 0.155 3.845 6 C -0.199 4.199 7 C -0.011 4.011 8 C -0.225 4.225 9 C 0.572 3.428 10 O -0.571 6.571 11 N -0.599 5.599 12 C 0.104 3.896 13 C -0.126 4.126 14 C -0.082 4.082 15 H 0.085 0.915 16 C 0.159 3.841 17 N -0.753 5.753 18 C -0.237 4.237 19 H 0.049 0.951 20 C -0.067 4.067 21 N -0.987 5.987 22 Si 0.958 3.042 23 H -0.274 1.274 24 H -0.297 1.297 25 H -0.243 1.243 26 C -0.088 4.088 27 H 0.058 0.942 28 C -0.145 4.145 29 C 0.122 3.878 30 H 0.064 0.936 31 H 0.113 0.887 32 H 0.062 0.938 33 H 0.200 0.800 34 H 0.186 0.814 35 H 0.171 0.829 36 H 0.099 0.901 37 H 0.101 0.899 38 H 0.076 0.924 39 H 0.050 0.950 40 H 0.010 0.990 41 H 0.031 0.969 42 H 0.368 0.632 43 H 0.258 0.742 44 H 0.068 0.932 45 H 0.054 0.946 46 H 0.066 0.934 47 H 0.081 0.919 48 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.902 9.389 -25.003 27.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.228 6.228 3 C 0.159 3.841 4 N -0.280 5.280 5 C -0.001 4.001 6 C -0.219 4.219 7 C -0.037 4.037 8 C -0.231 4.231 9 C 0.360 3.640 10 O -0.451 6.451 11 N -0.331 5.331 12 C -0.018 4.018 13 C -0.164 4.164 14 C -0.101 4.101 15 H 0.103 0.897 16 C 0.033 3.967 17 N -0.399 5.399 18 C -0.368 4.368 19 H 0.067 0.933 20 C -0.258 4.258 21 N -0.638 5.638 22 Si 0.784 3.216 23 H -0.200 1.200 24 H -0.224 1.224 25 H -0.168 1.168 26 C -0.108 4.108 27 H 0.076 0.924 28 C -0.202 4.202 29 C 0.000 4.000 30 H 0.083 0.917 31 H 0.131 0.869 32 H 0.081 0.919 33 H 0.217 0.783 34 H 0.203 0.797 35 H 0.189 0.811 36 H 0.117 0.883 37 H 0.119 0.881 38 H 0.095 0.905 39 H 0.069 0.931 40 H 0.028 0.972 41 H 0.049 0.951 42 H 0.202 0.798 43 H 0.067 0.933 44 H 0.087 0.913 45 H 0.073 0.927 46 H 0.085 0.915 47 H 0.099 0.901 48 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -8.844 8.408 -25.283 28.074 hybrid contribution 0.703 0.512 0.658 1.090 sum -8.142 8.920 -24.625 27.427 Atomic orbital electron populations 1.23078 0.75508 1.04476 1.02647 1.86290 1.24719 1.25003 1.86800 1.19943 0.88338 0.85426 0.90403 1.67476 1.40680 0.99239 1.20655 1.23397 0.94468 0.93608 0.88654 1.22393 0.94135 1.01034 1.04300 1.21989 1.02383 0.89181 0.90115 1.19888 0.91439 0.95833 1.15942 1.18153 0.79005 0.85899 0.80914 1.90750 1.69111 1.46322 1.38930 1.48093 1.37237 1.17586 1.30161 1.22149 1.03546 0.89719 0.86369 1.21900 0.99658 0.97996 0.96854 1.21290 1.00296 0.95206 0.93265 0.89677 1.20859 0.95530 0.92163 0.88125 1.42655 1.75525 1.18835 1.02922 1.19024 1.33067 1.01103 0.83631 0.93251 1.25591 1.02224 1.02868 0.95132 1.69904 1.53650 1.37807 1.02424 0.85365 0.77982 0.79550 0.78685 1.20041 1.22430 1.16754 1.21344 1.00064 0.95587 0.93804 0.92377 1.21806 0.99854 0.96406 1.02153 1.21716 0.96739 0.84924 0.96576 0.91747 0.86879 0.91940 0.78346 0.79704 0.81114 0.88336 0.88079 0.90541 0.93121 0.97216 0.95124 0.79800 0.93346 0.91317 0.92705 0.91483 0.90100 0.89130 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.72 10.38 113.37 1.18 1.90 16 2 O -0.32 -9.01 9.70 -84.81 -0.82 -9.83 16 3 C 0.34 8.59 7.50 85.13 0.64 9.23 16 4 N -0.56 -11.52 9.21 -308.00 -2.84 -14.35 16 5 C 0.16 1.96 11.17 84.71 0.95 2.90 16 6 C -0.20 -1.93 10.09 22.32 0.23 -1.70 16 7 C -0.01 -0.16 7.56 22.72 0.17 0.01 16 8 C -0.22 -5.23 4.91 -19.91 -0.10 -5.33 16 9 C 0.57 15.84 6.88 86.69 0.60 16.43 16 10 O -0.57 -20.18 16.21 -1.55 -0.03 -20.21 16 11 N -0.60 -13.89 2.97 -822.69 -2.44 -16.33 16 12 C 0.10 1.97 5.56 86.36 0.48 2.45 16 13 C -0.13 -3.19 5.25 30.67 0.16 -3.03 16 14 C -0.08 -2.22 1.73 -10.77 -0.02 -2.24 16 15 H 0.08 2.16 8.14 -2.39 -0.02 2.14 16 16 C 0.16 5.94 5.41 86.38 0.47 6.40 16 17 N -0.75 -34.23 5.12 -343.44 -1.76 -35.99 16 18 C -0.24 -13.56 10.47 84.03 0.88 -12.68 16 19 H 0.05 3.14 8.06 -2.91 -0.02 3.12 16 20 C -0.07 -3.93 5.50 84.86 0.47 -3.46 16 21 N -0.99 -63.39 13.97 21.65 0.30 -63.09 16 22 Si 0.96 43.80 27.73 68.60 1.90 45.70 16 23 H -0.27 -12.08 7.11 99.48 0.71 -11.38 16 24 H -0.30 -13.89 7.11 99.48 0.71 -13.18 16 25 H -0.24 -9.68 6.52 99.48 0.65 -9.03 16 26 C -0.09 -2.14 2.41 -10.72 -0.03 -2.17 16 27 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 28 C -0.14 -3.19 8.82 71.98 0.63 -2.55 16 29 C 0.12 2.75 5.71 86.36 0.49 3.24 16 30 H 0.06 1.14 8.10 -2.39 -0.02 1.12 16 31 H 0.11 1.72 8.14 -2.39 -0.02 1.70 16 32 H 0.06 1.14 8.10 -2.39 -0.02 1.12 16 33 H 0.20 0.96 8.06 -2.91 -0.02 0.93 16 34 H 0.19 0.33 8.06 -2.91 -0.02 0.30 16 35 H 0.17 1.51 7.41 -2.91 -0.02 1.49 16 36 H 0.10 1.63 4.72 -2.39 -0.01 1.61 16 37 H 0.10 1.42 8.14 -2.39 -0.02 1.40 16 38 H 0.08 2.05 7.15 -2.39 -0.02 2.03 16 39 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 40 H 0.01 0.40 8.14 -2.39 -0.02 0.38 16 41 H 0.03 1.17 6.14 -2.38 -0.01 1.16 16 42 H 0.37 15.41 4.71 -92.71 -0.44 14.98 16 43 H 0.26 15.70 8.31 -92.71 -0.77 14.93 16 44 H 0.07 1.36 8.14 -2.38 -0.02 1.34 16 45 H 0.05 1.38 6.30 -2.39 -0.02 1.36 16 46 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 47 H 0.08 2.05 7.03 -2.38 -0.02 2.03 16 48 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 Total: -1.00 -81.13 380.41 1.99 -79.14 By element: Atomic # 1 Polarization: 25.06 SS G_CDS: 0.47 Total: 25.54 kcal Atomic # 6 Polarization: 2.21 SS G_CDS: 7.19 Total: 9.41 kcal Atomic # 7 Polarization: -123.02 SS G_CDS: -6.74 Total: -129.76 kcal Atomic # 8 Polarization: -29.19 SS G_CDS: -0.85 Total: -30.03 kcal Atomic # 14 Polarization: 43.80 SS G_CDS: 1.90 Total: 45.70 kcal Total: -81.13 1.99 -79.14 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001185071647.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.478 kcal (2) G-P(sol) polarization free energy of solvation -81.130 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.652 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.988 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.142 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.80 seconds