Wall clock time and date at job start Tue Mar 31 2020 17:34:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 109.52622 * 2 1 4 4 C 1.53191 * 109.49716 * 239.91847 * 2 1 3 5 5 N 1.46929 * 108.77750 * 294.68940 * 4 2 1 6 6 C 1.34774 * 120.62948 * 126.41296 * 5 4 2 7 7 O 1.21606 * 120.00426 * 354.34157 * 6 5 4 8 8 C 1.47404 * 119.99547 * 174.34561 * 6 5 4 9 9 C 1.37358 * 128.56391 * 321.80500 * 8 6 5 10 10 O 1.33490 * 106.33921 * 179.91510 * 9 8 6 11 11 N 1.20653 * 113.15811 * 0.38789 * 10 9 8 12 12 C 1.30014 * 112.30255 * 359.75870 * 11 10 9 13 13 C 1.50697 * 127.33450 * 180.02562 * 12 11 10 14 14 C 1.52999 * 117.50087 * 8.74481 * 13 12 11 15 15 C 1.52992 * 117.49890 * 300.08243 * 13 12 11 16 16 C 1.46927 * 118.73219 * 306.38648 * 5 4 2 17 17 C 1.53194 * 108.77712 * 53.61520 * 16 5 4 18 18 C 1.53040 * 109.49552 * 120.08359 * 2 1 3 19 19 H 1.09002 * 109.45083 * 178.59803 * 18 2 1 20 20 C 1.52994 * 109.46142 * 298.56440 * 18 2 1 21 21 N 1.46498 * 109.47280 * 185.06989 * 20 18 2 22 22 C 1.36942 * 119.99905 * 180.02562 * 21 20 18 23 23 H 1.07993 * 120.00256 * 359.97438 * 22 21 20 24 24 C 1.38820 * 119.99754 * 179.97438 * 22 21 20 25 25 N 1.31615 * 119.99976 * 359.97438 * 24 22 21 26 26 Si 1.86796 * 119.99716 * 179.97438 * 24 22 21 27 27 H 1.48509 * 109.47036 * 180.02562 * 26 24 22 28 28 H 1.48504 * 109.47243 * 299.99820 * 26 24 22 29 29 H 1.48497 * 109.47155 * 60.00122 * 26 24 22 30 30 H 1.09002 * 109.46917 * 299.91876 * 1 2 3 31 31 H 1.08997 * 109.46999 * 59.91554 * 1 2 3 32 32 H 1.08994 * 109.47352 * 179.91685 * 1 2 3 33 33 H 1.09002 * 109.58669 * 174.89690 * 4 2 1 34 34 H 1.09003 * 109.70338 * 54.54152 * 4 2 1 35 35 H 1.08002 * 126.82900 * 359.97438 * 9 8 6 36 36 H 1.09002 * 115.54733 * 154.41988 * 13 12 11 37 37 H 1.08997 * 117.49968 * 359.97438 * 14 13 12 38 38 H 1.09002 * 117.49475 * 145.02194 * 14 13 12 39 39 H 1.09002 * 117.50090 * 214.98163 * 15 13 12 40 40 H 1.09001 * 117.49829 * 359.97438 * 15 13 12 41 41 H 1.08996 * 109.59179 * 293.82309 * 16 5 4 42 42 H 1.09010 * 109.69715 * 173.46731 * 16 5 4 43 43 H 1.09001 * 109.49432 * 185.40827 * 17 16 5 44 44 H 1.08999 * 109.52581 * 65.32547 * 17 16 5 45 45 H 1.08998 * 109.47465 * 65.06761 * 20 18 2 46 46 H 1.09001 * 109.47151 * 305.06763 * 20 18 2 47 47 H 0.97002 * 120.00393 * 0.02562 * 21 20 18 48 48 H 0.97001 * 120.00257 * 0.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0413 -0.7238 -1.2496 5 7 1.6514 -2.1382 -1.1697 6 6 0.9747 -2.7219 -2.1784 7 8 0.5911 -2.0545 -3.1198 8 6 0.6993 -4.1695 -2.1405 9 6 1.5100 -5.1839 -1.6926 10 8 0.8221 -6.3157 -1.8594 11 7 -0.2693 -6.1408 -2.3431 12 6 -0.5088 -4.8850 -2.5791 13 6 -1.7584 -4.2891 -3.1746 14 6 -2.9621 -5.2146 -3.3627 15 6 -2.1590 -4.7459 -4.5787 16 6 2.0139 -2.9040 0.0307 17 6 1.5029 -2.1558 1.2660 18 6 2.0408 -0.7232 1.2483 19 1 3.1305 -0.7445 1.2351 20 6 1.5607 0.0169 2.4984 21 7 2.1480 -0.6031 3.6887 22 6 1.8592 -0.1073 4.9321 23 1 1.1989 0.7410 5.0352 24 6 2.4154 -0.6951 6.0600 25 7 3.2198 -1.7293 5.9344 26 14 2.0221 -0.0183 7.7561 27 1 2.7362 -0.8160 8.7852 28 1 2.4594 1.3985 7.8373 29 1 0.5585 -0.0991 7.9941 30 1 -0.3633 0.5126 0.8907 31 1 -0.3633 0.5151 -0.8892 32 1 -0.3634 -1.0276 -0.0015 33 1 3.1275 -0.6463 -1.2980 34 1 1.6028 -0.2737 -2.1402 35 1 2.5055 -5.0852 -1.2855 36 1 -1.9582 -3.2516 -2.9067 37 1 -2.8501 -6.2546 -3.0563 38 1 -3.9539 -4.7859 -3.2190 39 1 -2.6229 -4.0090 -5.2344 40 1 -1.5186 -5.4770 -5.0720 41 1 3.0978 -3.0043 0.0867 42 1 1.5572 -3.8929 -0.0125 43 1 1.8480 -2.6630 2.1670 44 1 0.4132 -2.1355 1.2546 45 1 0.4738 -0.0387 2.5586 46 1 1.8686 1.0610 2.4432 47 1 2.7414 -1.3648 3.5961 48 1 3.4243 -2.0805 5.0536 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001185115134.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:34:39 Heat of formation + Delta-G solvation = 64.612146 kcal Electronic energy + Delta-G solvation = -29383.042613 eV Core-core repulsion = 25442.535245 eV Total energy + Delta-G solvation = -3940.507368 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -45.21706 -40.52135 -38.26036 -37.68901 -35.24764 -34.08066 -33.21425 -32.26386 -31.66005 -30.29218 -27.26390 -26.93362 -24.98222 -24.49637 -23.36810 -23.20636 -22.70619 -21.67595 -20.62052 -20.41476 -18.73047 -18.04754 -17.82242 -17.32837 -17.02239 -16.23459 -15.86328 -15.54460 -15.05611 -14.88382 -14.66555 -14.22718 -14.05965 -13.82143 -13.64474 -13.54727 -13.01953 -12.96212 -12.54521 -12.45393 -12.32303 -11.99258 -11.92310 -11.72169 -11.61525 -11.50803 -11.08248 -10.77698 -10.75387 -10.74274 -10.47002 -10.38765 -10.26113 -10.21978 -9.97704 -9.82945 -9.79797 -9.19955 -8.89380 -8.76576 -7.01935 -6.13025 -3.12262 0.84072 1.45827 2.42966 2.72625 2.95759 3.50110 3.51851 3.53323 3.62683 3.70762 3.93586 4.33332 4.55750 4.58939 4.61851 4.64121 4.68868 4.72143 4.83344 4.88769 4.97079 5.10133 5.17808 5.27646 5.30929 5.38942 5.42890 5.57249 5.57963 5.62131 5.66510 5.69954 5.74222 5.76149 5.79658 5.87475 5.92074 6.07286 6.15903 6.26153 6.31055 6.34124 6.50487 6.68131 6.81402 7.14578 7.78863 7.87258 7.92616 8.73339 9.20837 10.07025 10.22020 11.35623 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.016107 B = 0.002712 C = 0.002576 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1737.913437 B =10323.503747 C =10867.849269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.098 4.098 3 H 0.084 0.916 4 C 0.119 3.881 5 N -0.597 5.597 6 C 0.596 3.404 7 O -0.529 6.529 8 C -0.240 4.240 9 C -0.010 4.010 10 O 0.100 5.900 11 N -0.356 5.356 12 C 0.097 3.903 13 C -0.085 4.085 14 C -0.165 4.165 15 C -0.155 4.155 16 C 0.095 3.905 17 C -0.126 4.126 18 C -0.090 4.090 19 H 0.071 0.929 20 C 0.164 3.836 21 N -0.743 5.743 22 C -0.330 4.330 23 H 0.063 0.937 24 C -0.046 4.046 25 N -0.945 5.945 26 Si 1.079 2.921 27 H -0.285 1.285 28 H -0.295 1.295 29 H -0.295 1.295 30 H 0.062 0.938 31 H 0.050 0.950 32 H 0.054 0.946 33 H 0.070 0.930 34 H 0.093 0.907 35 H 0.228 0.772 36 H 0.130 0.870 37 H 0.102 0.898 38 H 0.104 0.896 39 H 0.105 0.895 40 H 0.096 0.904 41 H 0.075 0.925 42 H 0.083 0.917 43 H 0.085 0.915 44 H 0.070 0.930 45 H 0.022 0.978 46 H 0.018 0.982 47 H 0.366 0.634 48 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.236 -5.588 -20.389 21.780 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.118 4.118 3 H 0.102 0.898 4 C -0.003 4.003 5 N -0.330 5.330 6 C 0.383 3.617 7 O -0.406 6.406 8 C -0.248 4.248 9 C -0.092 4.092 10 O 0.040 5.960 11 N -0.061 5.061 12 C -0.065 4.065 13 C -0.104 4.104 14 C -0.202 4.202 15 C -0.193 4.193 16 C -0.027 4.027 17 C -0.164 4.164 18 C -0.109 4.109 19 H 0.089 0.911 20 C 0.037 3.963 21 N -0.389 5.389 22 C -0.461 4.461 23 H 0.081 0.919 24 C -0.243 4.243 25 N -0.590 5.590 26 Si 0.910 3.090 27 H -0.210 1.210 28 H -0.223 1.223 29 H -0.223 1.223 30 H 0.081 0.919 31 H 0.069 0.931 32 H 0.073 0.927 33 H 0.088 0.912 34 H 0.112 0.888 35 H 0.245 0.755 36 H 0.148 0.852 37 H 0.120 0.880 38 H 0.122 0.878 39 H 0.124 0.876 40 H 0.114 0.886 41 H 0.093 0.907 42 H 0.101 0.899 43 H 0.103 0.897 44 H 0.088 0.912 45 H 0.040 0.960 46 H 0.036 0.964 47 H 0.199 0.801 48 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -5.969 -6.357 -19.375 21.247 hybrid contribution 0.362 0.859 -1.407 1.688 sum -5.606 -5.497 -20.783 22.216 Atomic orbital electron populations 1.21857 0.94781 1.01959 1.01609 1.21467 0.96785 0.99544 0.93957 0.89809 1.21742 0.99512 0.79487 0.99538 1.47931 1.55601 1.11886 1.17540 1.16859 0.77808 0.84601 0.82402 1.90793 1.51525 1.64024 1.34305 1.22208 0.96338 0.95843 1.10377 1.26510 0.99792 0.84343 0.98578 1.84590 1.20196 1.32246 1.58994 1.73599 0.98730 1.18743 1.15077 1.23787 0.95819 0.87726 0.99136 1.20227 0.90194 0.99590 1.00416 1.23077 0.95192 1.00075 1.01849 1.23018 1.02861 1.03343 0.90069 1.22120 1.00548 0.95473 0.84553 1.21950 1.01637 0.96042 0.96798 1.21331 1.00165 0.94608 0.94763 0.91076 1.20643 0.95935 0.94617 0.85143 1.42382 1.57189 1.37530 1.01790 1.20029 1.27107 1.13734 0.85229 0.91887 1.25752 0.98206 0.97961 1.02372 1.70898 1.37931 1.25221 1.24990 0.83253 0.75408 0.74930 0.75431 1.21017 1.22291 1.22293 0.91929 0.93128 0.92702 0.91185 0.88841 0.75543 0.85198 0.87968 0.87762 0.87643 0.88585 0.90720 0.89864 0.89688 0.91181 0.95982 0.96378 0.80083 0.93527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.84 8.38 37.16 0.31 -1.53 16 2 C -0.10 -1.19 2.72 -90.50 -0.25 -1.44 16 3 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 4 C 0.12 1.32 5.84 -3.71 -0.02 1.30 16 5 N -0.60 -6.73 2.41 -174.04 -0.42 -7.14 16 6 C 0.60 7.59 7.66 -12.53 -0.10 7.49 16 7 O -0.53 -8.21 16.52 5.27 0.09 -8.12 16 8 C -0.24 -2.73 5.59 -102.89 -0.58 -3.31 16 9 C -0.01 -0.09 10.00 30.41 0.30 0.22 16 10 O 0.10 1.03 11.06 18.66 0.21 1.24 16 11 N -0.36 -4.25 11.71 34.78 0.41 -3.84 16 12 C 0.10 1.17 7.08 -79.77 -0.56 0.60 16 13 C -0.09 -0.92 6.31 -91.78 -0.58 -1.50 16 14 C -0.16 -1.44 10.17 -26.69 -0.27 -1.72 16 15 C -0.15 -1.38 10.24 -26.70 -0.27 -1.65 16 16 C 0.10 0.98 5.56 -3.71 -0.02 0.96 16 17 C -0.13 -1.71 4.90 -26.61 -0.13 -1.84 16 18 C -0.09 -1.30 1.96 -90.58 -0.18 -1.47 16 19 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 20 C 0.16 3.15 5.18 -4.05 -0.02 3.13 16 21 N -0.74 -18.02 5.32 -59.91 -0.32 -18.34 16 22 C -0.33 -9.20 9.99 -15.05 -0.15 -9.35 16 23 H 0.06 1.75 7.83 -52.49 -0.41 1.33 16 24 C -0.05 -1.31 5.50 -17.43 -0.10 -1.40 16 25 N -0.94 -28.62 13.70 55.49 0.76 -27.86 16 26 Si 1.08 25.69 29.92 -169.99 -5.09 20.60 16 27 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 28 H -0.30 -6.74 7.11 56.52 0.40 -6.33 16 29 H -0.30 -6.74 7.11 56.52 0.40 -6.34 16 30 H 0.06 0.84 6.58 -51.93 -0.34 0.50 16 31 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.05 0.74 5.97 -51.93 -0.31 0.43 16 33 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.09 1.10 6.99 -51.93 -0.36 0.74 16 35 H 0.23 1.05 7.31 -52.49 -0.38 0.66 16 36 H 0.13 1.44 8.14 -51.93 -0.42 1.02 16 37 H 0.10 0.95 7.97 -51.93 -0.41 0.54 16 38 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.11 0.79 8.14 -51.93 -0.42 0.36 16 40 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 41 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 42 H 0.08 0.76 4.73 -51.92 -0.25 0.51 16 43 H 0.08 1.31 7.15 -51.93 -0.37 0.94 16 44 H 0.07 1.02 6.34 -51.93 -0.33 0.69 16 45 H 0.02 0.45 6.74 -51.93 -0.35 0.10 16 46 H 0.02 0.37 8.14 -51.93 -0.42 -0.06 16 47 H 0.37 8.91 5.68 -40.82 -0.23 8.68 16 48 H 0.25 7.48 6.77 -40.82 -0.28 7.20 16 LS Contribution 380.53 15.07 5.73 5.73 Total: -1.00 -33.81 380.53 -8.29 -42.09 By element: Atomic # 1 Polarization: 14.18 SS G_CDS: -7.05 Total: 7.13 kcal Atomic # 6 Polarization: -8.88 SS G_CDS: -2.61 Total: -11.49 kcal Atomic # 7 Polarization: -57.61 SS G_CDS: 0.43 Total: -57.18 kcal Atomic # 8 Polarization: -7.18 SS G_CDS: 0.29 Total: -6.88 kcal Atomic # 14 Polarization: 25.69 SS G_CDS: -5.09 Total: 20.60 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -33.81 -8.29 -42.09 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001185115134.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.706 kcal (2) G-P(sol) polarization free energy of solvation -33.806 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.899 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.287 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.093 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.612 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds