Wall clock time and date at job start Tue Mar 31 2020 17:34:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 109.52622 * 2 1 4 4 C 1.53191 * 109.49716 * 239.91847 * 2 1 3 5 5 N 1.46929 * 108.77750 * 294.68940 * 4 2 1 6 6 C 1.34774 * 120.62948 * 126.41296 * 5 4 2 7 7 O 1.21606 * 120.00426 * 354.34157 * 6 5 4 8 8 C 1.47404 * 119.99547 * 174.34561 * 6 5 4 9 9 C 1.37358 * 128.56391 * 321.80500 * 8 6 5 10 10 O 1.33490 * 106.33921 * 179.91510 * 9 8 6 11 11 N 1.20653 * 113.15811 * 0.38789 * 10 9 8 12 12 C 1.30014 * 112.30255 * 359.75870 * 11 10 9 13 13 C 1.50697 * 127.33450 * 180.02562 * 12 11 10 14 14 C 1.52999 * 117.50087 * 8.74481 * 13 12 11 15 15 C 1.52992 * 117.49890 * 300.08243 * 13 12 11 16 16 C 1.46927 * 118.73219 * 306.38648 * 5 4 2 17 17 C 1.53194 * 108.77712 * 53.61520 * 16 5 4 18 18 C 1.53040 * 109.49552 * 120.08359 * 2 1 3 19 19 H 1.09002 * 109.45083 * 178.59803 * 18 2 1 20 20 C 1.52994 * 109.46142 * 298.56440 * 18 2 1 21 21 N 1.46498 * 109.47280 * 185.06989 * 20 18 2 22 22 C 1.36942 * 119.99905 * 180.02562 * 21 20 18 23 23 H 1.07993 * 120.00256 * 359.97438 * 22 21 20 24 24 C 1.38820 * 119.99754 * 179.97438 * 22 21 20 25 25 N 1.31615 * 119.99976 * 359.97438 * 24 22 21 26 26 Si 1.86796 * 119.99716 * 179.97438 * 24 22 21 27 27 H 1.48509 * 109.47036 * 180.02562 * 26 24 22 28 28 H 1.48504 * 109.47243 * 299.99820 * 26 24 22 29 29 H 1.48497 * 109.47155 * 60.00122 * 26 24 22 30 30 H 1.09002 * 109.46917 * 299.91876 * 1 2 3 31 31 H 1.08997 * 109.46999 * 59.91554 * 1 2 3 32 32 H 1.08994 * 109.47352 * 179.91685 * 1 2 3 33 33 H 1.09002 * 109.58669 * 174.89690 * 4 2 1 34 34 H 1.09003 * 109.70338 * 54.54152 * 4 2 1 35 35 H 1.08002 * 126.82900 * 359.97438 * 9 8 6 36 36 H 1.09002 * 115.54733 * 154.41988 * 13 12 11 37 37 H 1.08997 * 117.49968 * 359.97438 * 14 13 12 38 38 H 1.09002 * 117.49475 * 145.02194 * 14 13 12 39 39 H 1.09002 * 117.50090 * 214.98163 * 15 13 12 40 40 H 1.09001 * 117.49829 * 359.97438 * 15 13 12 41 41 H 1.08996 * 109.59179 * 293.82309 * 16 5 4 42 42 H 1.09010 * 109.69715 * 173.46731 * 16 5 4 43 43 H 1.09001 * 109.49432 * 185.40827 * 17 16 5 44 44 H 1.08999 * 109.52581 * 65.32547 * 17 16 5 45 45 H 1.08998 * 109.47465 * 65.06761 * 20 18 2 46 46 H 1.09001 * 109.47151 * 305.06763 * 20 18 2 47 47 H 0.97002 * 120.00393 * 0.02562 * 21 20 18 48 48 H 0.97001 * 120.00257 * 0.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0413 -0.7238 -1.2496 5 7 1.6514 -2.1382 -1.1697 6 6 0.9747 -2.7219 -2.1784 7 8 0.5911 -2.0545 -3.1198 8 6 0.6993 -4.1695 -2.1405 9 6 1.5100 -5.1839 -1.6926 10 8 0.8221 -6.3157 -1.8594 11 7 -0.2693 -6.1408 -2.3431 12 6 -0.5088 -4.8850 -2.5791 13 6 -1.7584 -4.2891 -3.1746 14 6 -2.9621 -5.2146 -3.3627 15 6 -2.1590 -4.7459 -4.5787 16 6 2.0139 -2.9040 0.0307 17 6 1.5029 -2.1558 1.2660 18 6 2.0408 -0.7232 1.2483 19 1 3.1305 -0.7445 1.2351 20 6 1.5607 0.0169 2.4984 21 7 2.1480 -0.6031 3.6887 22 6 1.8592 -0.1073 4.9321 23 1 1.1989 0.7410 5.0352 24 6 2.4154 -0.6951 6.0600 25 7 3.2198 -1.7293 5.9344 26 14 2.0221 -0.0183 7.7561 27 1 2.7362 -0.8160 8.7852 28 1 2.4594 1.3985 7.8373 29 1 0.5585 -0.0991 7.9941 30 1 -0.3633 0.5126 0.8907 31 1 -0.3633 0.5151 -0.8892 32 1 -0.3634 -1.0276 -0.0015 33 1 3.1275 -0.6463 -1.2980 34 1 1.6028 -0.2737 -2.1402 35 1 2.5055 -5.0852 -1.2855 36 1 -1.9582 -3.2516 -2.9067 37 1 -2.8501 -6.2546 -3.0563 38 1 -3.9539 -4.7859 -3.2190 39 1 -2.6229 -4.0090 -5.2344 40 1 -1.5186 -5.4770 -5.0720 41 1 3.0978 -3.0043 0.0867 42 1 1.5572 -3.8929 -0.0125 43 1 1.8480 -2.6630 2.1670 44 1 0.4132 -2.1355 1.2546 45 1 0.4738 -0.0387 2.5586 46 1 1.8686 1.0610 2.4432 47 1 2.7414 -1.3648 3.5961 48 1 3.4243 -2.0805 5.0536 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001185115134.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:34:38 Heat of formation + Delta-G solvation = 44.858720 kcal Electronic energy + Delta-G solvation = -29383.899186 eV Core-core repulsion = 25442.535245 eV Total energy + Delta-G solvation = -3941.363941 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -46.04360 -41.51971 -39.35202 -38.47452 -36.84099 -35.30099 -34.22782 -33.38510 -32.67161 -31.90437 -28.39059 -28.23603 -25.97771 -25.57912 -25.01278 -24.24670 -23.41730 -23.01798 -21.43536 -21.35214 -19.85664 -19.31741 -18.84909 -18.66133 -17.99435 -17.19348 -16.80011 -16.64356 -16.38028 -16.09309 -15.73468 -15.61749 -15.37133 -14.96779 -14.94442 -14.53314 -14.39059 -14.17942 -13.71759 -13.61850 -13.18971 -12.83894 -12.83187 -12.69333 -12.65559 -12.61114 -12.49480 -12.38921 -12.15079 -11.91046 -11.79438 -11.55610 -11.47139 -11.45768 -11.21320 -11.14093 -10.90514 -10.66707 -10.60787 -9.73269 -9.07410 -8.38254 -5.31427 0.07950 0.61262 1.54261 1.58879 1.67895 1.84611 1.88040 2.17526 2.71266 2.76581 2.84574 3.16515 3.40284 3.47338 3.61381 3.68472 3.76561 3.80860 3.82315 3.96572 3.97123 3.98967 4.12120 4.18972 4.31187 4.37332 4.51632 4.57630 4.60810 4.62993 4.64468 4.72121 4.75880 4.76823 4.86715 4.90103 4.99606 5.00588 5.07532 5.10493 5.10762 5.16346 5.24680 5.43060 5.53574 5.59731 6.21674 6.53101 6.94977 7.12487 7.12823 8.03190 8.13560 9.14315 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.016107 B = 0.002712 C = 0.002576 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1737.913437 B =10323.503747 C =10867.849269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.090 4.090 3 H 0.094 0.906 4 C 0.122 3.878 5 N -0.592 5.592 6 C 0.599 3.401 7 O -0.563 6.563 8 C -0.270 4.270 9 C 0.019 3.981 10 O 0.100 5.900 11 N -0.374 5.374 12 C 0.083 3.917 13 C -0.108 4.108 14 C -0.154 4.154 15 C -0.148 4.148 16 C 0.102 3.898 17 C -0.122 4.122 18 C -0.078 4.078 19 H 0.076 0.924 20 C 0.164 3.836 21 N -0.753 5.753 22 C -0.336 4.336 23 H 0.060 0.940 24 C -0.101 4.101 25 N -0.973 5.973 26 Si 1.124 2.876 27 H -0.291 1.291 28 H -0.279 1.279 29 H -0.281 1.281 30 H 0.049 0.951 31 H 0.058 0.942 32 H 0.044 0.956 33 H 0.092 0.908 34 H 0.089 0.911 35 H 0.270 0.730 36 H 0.120 0.880 37 H 0.096 0.904 38 H 0.121 0.879 39 H 0.120 0.880 40 H 0.092 0.908 41 H 0.102 0.898 42 H 0.098 0.902 43 H 0.064 0.936 44 H 0.055 0.945 45 H 0.014 0.986 46 H 0.013 0.987 47 H 0.364 0.636 48 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.724 -5.676 -20.997 22.258 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.110 4.110 3 H 0.112 0.888 4 C 0.000 4.000 5 N -0.324 5.324 6 C 0.388 3.612 7 O -0.443 6.443 8 C -0.277 4.277 9 C -0.062 4.062 10 O 0.041 5.959 11 N -0.080 5.080 12 C -0.078 4.078 13 C -0.127 4.127 14 C -0.191 4.191 15 C -0.186 4.186 16 C -0.020 4.020 17 C -0.160 4.160 18 C -0.097 4.097 19 H 0.094 0.906 20 C 0.038 3.962 21 N -0.398 5.398 22 C -0.467 4.467 23 H 0.078 0.922 24 C -0.292 4.292 25 N -0.621 5.621 26 Si 0.949 3.051 27 H -0.217 1.217 28 H -0.205 1.205 29 H -0.207 1.207 30 H 0.068 0.932 31 H 0.077 0.923 32 H 0.063 0.937 33 H 0.110 0.890 34 H 0.107 0.893 35 H 0.286 0.714 36 H 0.138 0.862 37 H 0.114 0.886 38 H 0.139 0.861 39 H 0.138 0.862 40 H 0.110 0.890 41 H 0.120 0.880 42 H 0.116 0.884 43 H 0.083 0.917 44 H 0.074 0.926 45 H 0.032 0.968 46 H 0.031 0.969 47 H 0.197 0.803 48 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -5.469 -6.434 -20.011 21.720 hybrid contribution 0.174 0.920 -1.236 1.551 sum -5.295 -5.514 -21.248 22.581 Atomic orbital electron populations 1.21797 0.95348 1.01208 1.01378 1.21414 0.96173 1.00052 0.93346 0.88792 1.21749 1.00687 0.79193 0.98341 1.47937 1.55066 1.12006 1.17368 1.16982 0.77185 0.85000 0.82080 1.90771 1.52899 1.64927 1.35693 1.22175 0.97172 0.95693 1.12674 1.27211 1.00269 0.82817 0.95935 1.84567 1.19919 1.32800 1.58644 1.73598 0.99567 1.18834 1.16030 1.24072 0.96526 0.87995 0.99216 1.20288 0.90958 0.99495 1.01986 1.23121 0.95356 0.99387 1.01246 1.23082 1.02487 1.03313 0.89670 1.22159 1.02155 0.95294 0.82368 1.21840 1.00730 0.95685 0.97741 1.21204 1.00295 0.94839 0.93341 0.90610 1.20768 0.95155 0.94658 0.85664 1.42541 1.57333 1.37630 1.02264 1.20353 1.26251 1.13277 0.86855 0.92200 1.27087 0.98158 0.97990 1.05989 1.70990 1.39715 1.26686 1.24708 0.82665 0.75939 0.75005 0.71460 1.21726 1.20536 1.20691 0.93160 0.92286 0.93722 0.89018 0.89278 0.71441 0.86181 0.88587 0.86060 0.86175 0.88978 0.87966 0.88398 0.91705 0.92618 0.96834 0.96892 0.80348 0.94303 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.49 8.38 71.98 0.60 -2.88 16 2 C -0.09 -2.06 2.72 -10.72 -0.03 -2.09 16 3 H 0.09 2.00 8.14 -2.39 -0.02 1.98 16 4 C 0.12 2.44 5.84 86.36 0.50 2.95 16 5 N -0.59 -12.11 2.41 -822.78 -1.98 -14.10 16 6 C 0.60 14.49 7.66 86.66 0.66 15.16 16 7 O -0.56 -17.20 16.52 -4.05 -0.07 -17.27 16 8 C -0.27 -5.76 5.59 -18.74 -0.10 -5.87 16 9 C 0.02 0.28 10.00 67.61 0.68 0.96 16 10 O 0.10 1.89 11.06 77.02 0.85 2.74 16 11 N -0.37 -8.64 11.71 -44.79 -0.52 -9.17 16 12 C 0.08 1.97 7.08 45.15 0.32 2.29 16 13 C -0.11 -2.32 6.31 -11.54 -0.07 -2.40 16 14 C -0.15 -2.61 10.17 30.62 0.31 -2.30 16 15 C -0.15 -2.55 10.24 30.62 0.31 -2.23 16 16 C 0.10 1.84 5.56 86.36 0.48 2.32 16 17 C -0.12 -3.18 4.90 30.67 0.15 -3.03 16 18 C -0.08 -2.16 1.96 -10.77 -0.02 -2.18 16 19 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 20 C 0.16 6.28 5.18 86.38 0.45 6.73 16 21 N -0.75 -36.66 5.32 -343.46 -1.83 -38.49 16 22 C -0.34 -18.75 9.99 84.03 0.84 -17.91 16 23 H 0.06 3.31 7.83 -2.91 -0.02 3.29 16 24 C -0.10 -5.75 5.50 84.86 0.47 -5.29 16 25 N -0.97 -59.27 13.70 21.65 0.30 -58.97 16 26 Si 1.12 51.40 29.92 68.60 2.05 53.45 16 27 H -0.29 -13.55 7.11 99.48 0.71 -12.84 16 28 H -0.28 -11.91 7.11 99.48 0.71 -11.20 16 29 H -0.28 -12.03 7.11 99.48 0.71 -11.32 16 30 H 0.05 1.35 6.58 -2.39 -0.02 1.34 16 31 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 32 H 0.04 1.19 5.97 -2.39 -0.01 1.18 16 33 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 34 H 0.09 1.95 6.99 -2.39 -0.02 1.93 16 35 H 0.27 1.28 7.31 -2.91 -0.02 1.26 16 36 H 0.12 2.75 8.14 -2.39 -0.02 2.73 16 37 H 0.10 1.75 7.97 -2.39 -0.02 1.73 16 38 H 0.12 1.59 8.14 -2.39 -0.02 1.57 16 39 H 0.12 1.67 8.14 -2.39 -0.02 1.65 16 40 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 41 H 0.10 1.38 8.14 -2.39 -0.02 1.36 16 42 H 0.10 1.50 4.73 -2.38 -0.01 1.49 16 43 H 0.06 1.98 7.15 -2.39 -0.02 1.96 16 44 H 0.06 1.61 6.34 -2.39 -0.02 1.59 16 45 H 0.01 0.55 6.74 -2.39 -0.02 0.54 16 46 H 0.01 0.52 8.14 -2.39 -0.02 0.50 16 47 H 0.36 17.87 5.68 -92.71 -0.53 17.34 16 48 H 0.25 14.73 6.77 -92.71 -0.63 14.10 16 Total: -1.00 -73.84 380.53 4.95 -68.89 By element: Atomic # 1 Polarization: 28.08 SS G_CDS: 0.60 Total: 28.68 kcal Atomic # 6 Polarization: -21.32 SS G_CDS: 5.55 Total: -15.78 kcal Atomic # 7 Polarization: -116.68 SS G_CDS: -4.04 Total: -120.72 kcal Atomic # 8 Polarization: -15.31 SS G_CDS: 0.78 Total: -14.53 kcal Atomic # 14 Polarization: 51.40 SS G_CDS: 2.05 Total: 53.45 kcal Total: -73.84 4.95 -68.89 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001185115134.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.750 kcal (2) G-P(sol) polarization free energy of solvation -73.844 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.953 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.891 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.859 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds