Wall clock time and date at job start Tue Mar 31 2020 17:34:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.49657 * 2 1 4 4 C 1.52758 * 109.59300 * 240.04212 * 2 1 3 5 5 N 1.46927 * 109.00447 * 185.53655 * 4 2 1 6 6 C 1.34781 * 120.62718 * 233.58085 * 5 4 2 7 7 O 1.21599 * 120.00032 * 5.60730 * 6 5 4 8 8 C 1.47400 * 119.99649 * 185.60546 * 6 5 4 9 9 C 1.37359 * 128.56916 * 34.90207 * 8 6 5 10 10 O 1.33484 * 106.34220 * 180.23705 * 9 8 6 11 11 N 1.20656 * 113.16048 * 359.74021 * 10 9 8 12 12 C 1.30014 * 112.29997 * 0.02562 * 11 10 9 13 13 C 1.50703 * 127.33889 * 179.97438 * 12 11 10 14 14 C 1.53005 * 117.49865 * 60.01696 * 13 12 11 15 15 C 1.53006 * 60.02990 * 252.50387 * 14 13 12 16 16 C 1.46923 * 118.74076 * 53.31240 * 5 4 2 17 17 C 1.53190 * 108.77433 * 306.64027 * 16 5 4 18 18 C 1.53043 * 109.49286 * 120.06072 * 2 1 3 19 19 H 1.08994 * 109.46451 * 61.32885 * 18 2 1 20 20 C 1.53005 * 109.45827 * 301.37000 * 18 2 1 21 21 N 1.46509 * 109.46629 * 174.93765 * 20 18 2 22 22 C 1.36935 * 119.99614 * 180.02562 * 21 20 18 23 23 H 1.08004 * 119.99958 * 359.97438 * 22 21 20 24 24 C 1.38818 * 119.99919 * 179.97438 * 22 21 20 25 25 N 1.31621 * 119.99596 * 359.97438 * 24 22 21 26 26 Si 1.86794 * 120.00078 * 179.97438 * 24 22 21 27 27 H 1.48505 * 109.47009 * 359.97438 * 26 24 22 28 28 H 1.48497 * 109.47214 * 120.00030 * 26 24 22 29 29 H 1.48494 * 109.47218 * 239.99933 * 26 24 22 30 30 H 1.08994 * 109.47391 * 299.94153 * 1 2 3 31 31 H 1.09005 * 109.47016 * 59.93818 * 1 2 3 32 32 H 1.08999 * 109.47323 * 179.97438 * 1 2 3 33 33 H 1.08999 * 109.50796 * 65.65858 * 4 2 1 34 34 H 1.08998 * 109.43278 * 305.37169 * 4 2 1 35 35 H 1.08004 * 126.82306 * 359.97438 * 9 8 6 36 36 H 1.09000 * 115.55055 * 205.69179 * 13 12 11 37 37 H 1.08997 * 117.49534 * 0.02562 * 14 13 12 38 38 H 1.08994 * 117.49934 * 145.00038 * 14 13 12 39 39 H 1.08994 * 117.49788 * 107.50532 * 15 14 13 40 40 H 1.09003 * 117.49503 * 252.51984 * 15 14 13 41 41 H 1.09005 * 109.58916 * 66.42753 * 16 5 4 42 42 H 1.09000 * 109.58949 * 186.70759 * 16 5 4 43 43 H 1.09005 * 109.49893 * 174.58499 * 17 16 5 44 44 H 1.08995 * 109.49925 * 294.65161 * 17 16 5 45 45 H 1.09001 * 109.47306 * 294.92726 * 20 18 2 46 46 H 1.08997 * 109.47124 * 54.93516 * 20 18 2 47 47 H 0.96993 * 119.99944 * 359.97438 * 21 20 18 48 48 H 0.96994 * 119.99419 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0423 -0.7186 -1.2469 5 7 3.5054 -0.8283 -1.1687 6 6 4.2820 -0.3846 -2.1770 7 8 3.7816 0.2035 -3.1163 8 6 5.7379 -0.6122 -2.1408 9 6 6.4237 -1.6920 -1.6404 10 8 7.7196 -1.4349 -1.8307 11 7 7.9187 -0.3743 -2.3704 12 6 6.8149 0.2599 -2.6342 13 6 6.6698 1.6047 -3.2988 14 6 7.2259 1.7560 -4.7161 15 6 7.9454 2.4163 -3.5382 16 6 4.1060 -1.4254 0.0319 17 6 3.5708 -0.6938 1.2668 18 6 2.0407 -0.7227 1.2487 19 1 1.6971 -1.7570 1.2357 20 6 1.5028 -0.0228 2.4984 21 7 1.8909 -0.7832 3.6890 22 6 1.5186 -0.3459 4.9321 23 1 0.9392 0.5598 5.0348 24 6 1.8859 -1.0667 6.0603 25 7 2.5915 -2.1706 5.9349 26 14 1.3786 -0.4697 7.7560 27 1 0.5975 0.7865 7.6254 28 1 0.5443 -1.5056 8.4164 29 1 2.5912 -0.2152 8.5744 30 1 -0.3634 0.5129 0.8904 31 1 -0.3633 0.5148 -0.8895 32 1 -0.3634 -1.0276 -0.0005 33 1 1.7654 -0.1498 -2.1344 34 1 1.6033 -1.7151 -1.2972 35 1 5.9989 -2.5719 -1.1802 36 1 5.7616 2.1550 -3.0530 37 1 7.6963 0.8827 -5.1680 38 1 6.6835 2.4058 -5.4028 39 1 8.8894 1.9776 -3.2152 40 1 7.8760 3.5005 -3.4499 41 1 3.8387 -2.4807 0.0879 42 1 5.1904 -1.3251 -0.0135 43 1 3.9333 -1.1882 2.1681 44 1 3.9158 0.3400 1.2551 45 1 1.9181 0.9832 2.5586 46 1 0.4158 0.0355 2.4428 47 1 2.4109 -1.5968 3.5967 48 1 2.8484 -2.6740 6.7232 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001185115138.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:34:44 Heat of formation + Delta-G solvation = 62.125760 kcal Electronic energy + Delta-G solvation = -29062.346727 eV Core-core repulsion = 25121.731541 eV Total energy + Delta-G solvation = -3940.615186 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -45.18532 -40.35606 -38.15813 -37.64545 -35.13515 -34.02045 -33.19095 -32.20554 -31.87179 -30.36948 -27.20757 -26.99483 -24.90537 -24.59614 -23.47519 -22.68669 -22.54641 -21.39704 -20.60185 -20.28354 -19.50525 -18.02771 -17.72444 -17.22293 -16.88549 -16.28557 -15.82223 -15.38169 -14.88608 -14.86374 -14.51563 -14.18309 -13.97058 -13.81286 -13.52073 -13.30673 -13.00762 -12.63694 -12.52588 -12.37988 -12.05310 -11.98117 -11.91109 -11.82439 -11.68887 -11.54832 -11.03658 -10.94420 -10.86029 -10.74163 -10.43627 -10.39398 -10.26156 -10.21813 -9.99492 -9.80095 -9.75976 -9.66901 -8.89888 -8.72220 -6.93600 -5.80189 -3.07896 0.86139 1.48555 2.47218 2.78228 2.99827 3.40930 3.47129 3.48909 3.54576 3.65917 3.96294 4.37919 4.55749 4.58730 4.61676 4.67605 4.72983 4.75703 4.87492 4.92987 5.02817 5.19052 5.23921 5.33053 5.33488 5.41534 5.45724 5.54459 5.61187 5.64087 5.72112 5.78765 5.79531 5.82458 5.84601 5.92129 6.02294 6.16838 6.23793 6.27903 6.38685 6.45259 6.56607 6.79137 6.88979 7.18897 7.68152 7.90490 7.96095 8.39424 9.50761 10.08587 10.43163 11.42915 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.014899 B = 0.002690 C = 0.002486 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1878.839983 B =10404.649594 C =11261.697844 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.098 4.098 3 H 0.073 0.927 4 C 0.120 3.880 5 N -0.600 5.600 6 C 0.596 3.404 7 O -0.531 6.531 8 C -0.241 4.241 9 C -0.010 4.010 10 O 0.100 5.900 11 N -0.356 5.356 12 C 0.098 3.902 13 C -0.085 4.085 14 C -0.155 4.155 15 C -0.165 4.165 16 C 0.093 3.907 17 C -0.125 4.125 18 C -0.089 4.089 19 H 0.073 0.927 20 C 0.156 3.844 21 N -0.732 5.732 22 C -0.237 4.237 23 H 0.070 0.930 24 C -0.015 4.015 25 N -0.934 5.934 26 Si 0.905 3.095 27 H -0.281 1.281 28 H -0.292 1.292 29 H -0.292 1.292 30 H 0.069 0.931 31 H 0.052 0.948 32 H 0.056 0.944 33 H 0.092 0.908 34 H 0.070 0.930 35 H 0.230 0.770 36 H 0.131 0.869 37 H 0.095 0.905 38 H 0.105 0.895 39 H 0.102 0.898 40 H 0.104 0.896 41 H 0.076 0.924 42 H 0.084 0.916 43 H 0.091 0.909 44 H 0.064 0.936 45 H 0.016 0.984 46 H 0.025 0.975 47 H 0.383 0.617 48 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.627 2.221 -20.342 21.510 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.118 4.118 3 H 0.091 0.909 4 C -0.002 4.002 5 N -0.332 5.332 6 C 0.383 3.617 7 O -0.409 6.409 8 C -0.248 4.248 9 C -0.091 4.091 10 O 0.040 5.960 11 N -0.062 5.062 12 C -0.064 4.064 13 C -0.104 4.104 14 C -0.193 4.193 15 C -0.202 4.202 16 C -0.029 4.029 17 C -0.163 4.163 18 C -0.108 4.108 19 H 0.091 0.909 20 C 0.029 3.971 21 N -0.376 5.376 22 C -0.368 4.368 23 H 0.088 0.912 24 C -0.210 4.210 25 N -0.583 5.583 26 Si 0.737 3.263 27 H -0.206 1.206 28 H -0.219 1.219 29 H -0.219 1.219 30 H 0.088 0.912 31 H 0.071 0.929 32 H 0.076 0.924 33 H 0.110 0.890 34 H 0.088 0.912 35 H 0.246 0.754 36 H 0.149 0.851 37 H 0.114 0.886 38 H 0.123 0.877 39 H 0.120 0.880 40 H 0.122 0.878 41 H 0.094 0.906 42 H 0.102 0.898 43 H 0.109 0.891 44 H 0.083 0.917 45 H 0.034 0.966 46 H 0.043 0.957 47 H 0.217 0.783 48 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 7.575 2.866 -20.882 22.398 hybrid contribution -0.988 -0.167 1.288 1.631 sum 6.587 2.699 -19.595 20.848 Atomic orbital electron populations 1.21828 0.94210 1.02244 1.02154 1.21389 0.96243 1.00046 0.94095 0.90856 1.21667 0.77811 1.01164 0.99521 1.47983 1.07193 1.60385 1.17656 1.16868 0.83774 0.78656 0.82396 1.90787 1.74310 1.41273 1.34485 1.22204 0.95707 0.97349 1.09548 1.26576 0.83375 1.00731 0.98456 1.84590 1.25494 1.28962 1.56999 1.73600 1.23215 0.95487 1.13919 1.23788 0.86487 0.97220 0.98931 1.20247 1.00007 0.90835 0.99298 1.23006 1.02850 1.03227 0.90224 1.23077 0.95629 0.99409 1.02114 1.22195 0.98378 0.97773 0.84543 1.21923 0.96179 1.01212 0.96993 1.21345 0.94564 1.00244 0.94606 0.90857 1.20757 0.96711 0.94060 0.85591 1.42377 1.65425 1.28944 1.00870 1.19269 1.27533 1.06170 0.83829 0.91244 1.24719 1.00966 0.97542 0.97809 1.69655 1.42913 1.17300 1.28443 0.86135 0.77673 0.77769 0.84743 1.20600 1.21881 1.21894 0.91241 0.92938 0.92449 0.88995 0.91155 0.75413 0.85118 0.88604 0.87658 0.87983 0.87783 0.90604 0.89834 0.89056 0.91720 0.96583 0.95737 0.78343 0.93598 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.67 8.82 37.16 0.33 -1.34 16 2 C -0.10 -1.21 2.40 -90.72 -0.22 -1.43 16 3 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 4 C 0.12 1.37 5.70 -3.93 -0.02 1.35 16 5 N -0.60 -6.98 2.98 -174.31 -0.52 -7.50 16 6 C 0.60 7.79 7.66 -12.53 -0.10 7.69 16 7 O -0.53 -8.40 16.50 5.28 0.09 -8.32 16 8 C -0.24 -2.79 5.69 -102.89 -0.59 -3.37 16 9 C -0.01 -0.08 9.98 30.41 0.30 0.22 16 10 O 0.10 1.04 11.06 18.67 0.21 1.25 16 11 N -0.36 -4.30 11.71 34.78 0.41 -3.89 16 12 C 0.10 1.19 7.08 -79.76 -0.56 0.62 16 13 C -0.08 -0.92 6.29 -91.73 -0.58 -1.50 16 14 C -0.15 -1.39 10.23 -26.73 -0.27 -1.67 16 15 C -0.16 -1.46 10.17 -26.69 -0.27 -1.73 16 16 C 0.09 0.98 5.49 -3.71 -0.02 0.96 16 17 C -0.12 -1.71 5.25 -26.61 -0.14 -1.85 16 18 C -0.09 -1.29 1.73 -90.57 -0.16 -1.44 16 19 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 20 C 0.16 2.96 5.41 -4.03 -0.02 2.94 16 21 N -0.73 -17.61 5.32 -59.90 -0.32 -17.93 16 22 C -0.24 -6.47 9.99 -15.06 -0.15 -6.62 16 23 H 0.07 1.87 7.83 -52.48 -0.41 1.45 16 24 C -0.01 -0.41 5.50 -17.43 -0.10 -0.51 16 25 N -0.93 -27.44 13.06 55.49 0.72 -26.72 16 26 Si 0.91 22.09 29.55 -169.99 -5.02 17.07 16 27 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 28 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 29 H -0.29 -7.17 7.11 56.52 0.40 -6.76 16 30 H 0.07 0.87 6.29 -51.93 -0.33 0.54 16 31 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.09 1.11 7.00 -51.93 -0.36 0.75 16 34 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 35 H 0.23 1.11 7.06 -52.48 -0.37 0.74 16 36 H 0.13 1.47 8.14 -51.93 -0.42 1.05 16 37 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 38 H 0.11 0.79 8.14 -51.93 -0.42 0.37 16 39 H 0.10 0.96 7.97 -51.93 -0.41 0.54 16 40 H 0.10 0.75 8.14 -51.93 -0.42 0.32 16 41 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 42 H 0.08 0.77 4.54 -51.93 -0.24 0.53 16 43 H 0.09 1.43 7.15 -51.93 -0.37 1.06 16 44 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 45 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 46 H 0.02 0.47 6.14 -51.93 -0.32 0.16 16 47 H 0.38 9.54 6.85 -40.82 -0.28 9.26 16 48 H 0.25 7.24 8.31 -40.82 -0.34 6.90 16 LS Contribution 385.72 15.07 5.81 5.81 Total: -1.00 -32.56 385.72 -8.48 -41.04 By element: Atomic # 1 Polarization: 14.16 SS G_CDS: -7.30 Total: 6.86 kcal Atomic # 6 Polarization: -5.12 SS G_CDS: -2.56 Total: -7.68 kcal Atomic # 7 Polarization: -56.33 SS G_CDS: 0.29 Total: -56.04 kcal Atomic # 8 Polarization: -7.36 SS G_CDS: 0.29 Total: -7.07 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.07 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -32.56 -8.48 -41.04 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001185115138.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.169 kcal (2) G-P(sol) polarization free energy of solvation -32.560 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.609 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.483 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.043 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.126 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds