Wall clock time and date at job start Tue Mar 31 2020 17:34:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.49657 * 2 1 4 4 C 1.52758 * 109.59300 * 240.04212 * 2 1 3 5 5 N 1.46927 * 109.00447 * 185.53655 * 4 2 1 6 6 C 1.34781 * 120.62718 * 233.58085 * 5 4 2 7 7 O 1.21599 * 120.00032 * 5.60730 * 6 5 4 8 8 C 1.47400 * 119.99649 * 185.60546 * 6 5 4 9 9 C 1.37359 * 128.56916 * 34.90207 * 8 6 5 10 10 O 1.33484 * 106.34220 * 180.23705 * 9 8 6 11 11 N 1.20656 * 113.16048 * 359.74021 * 10 9 8 12 12 C 1.30014 * 112.29997 * 0.02562 * 11 10 9 13 13 C 1.50703 * 127.33889 * 179.97438 * 12 11 10 14 14 C 1.53005 * 117.49865 * 60.01696 * 13 12 11 15 15 C 1.53006 * 60.02990 * 252.50387 * 14 13 12 16 16 C 1.46923 * 118.74076 * 53.31240 * 5 4 2 17 17 C 1.53190 * 108.77433 * 306.64027 * 16 5 4 18 18 C 1.53043 * 109.49286 * 120.06072 * 2 1 3 19 19 H 1.08994 * 109.46451 * 61.32885 * 18 2 1 20 20 C 1.53005 * 109.45827 * 301.37000 * 18 2 1 21 21 N 1.46509 * 109.46629 * 174.93765 * 20 18 2 22 22 C 1.36935 * 119.99614 * 180.02562 * 21 20 18 23 23 H 1.08004 * 119.99958 * 359.97438 * 22 21 20 24 24 C 1.38818 * 119.99919 * 179.97438 * 22 21 20 25 25 N 1.31621 * 119.99596 * 359.97438 * 24 22 21 26 26 Si 1.86794 * 120.00078 * 179.97438 * 24 22 21 27 27 H 1.48505 * 109.47009 * 359.97438 * 26 24 22 28 28 H 1.48497 * 109.47214 * 120.00030 * 26 24 22 29 29 H 1.48494 * 109.47218 * 239.99933 * 26 24 22 30 30 H 1.08994 * 109.47391 * 299.94153 * 1 2 3 31 31 H 1.09005 * 109.47016 * 59.93818 * 1 2 3 32 32 H 1.08999 * 109.47323 * 179.97438 * 1 2 3 33 33 H 1.08999 * 109.50796 * 65.65858 * 4 2 1 34 34 H 1.08998 * 109.43278 * 305.37169 * 4 2 1 35 35 H 1.08004 * 126.82306 * 359.97438 * 9 8 6 36 36 H 1.09000 * 115.55055 * 205.69179 * 13 12 11 37 37 H 1.08997 * 117.49534 * 0.02562 * 14 13 12 38 38 H 1.08994 * 117.49934 * 145.00038 * 14 13 12 39 39 H 1.08994 * 117.49788 * 107.50532 * 15 14 13 40 40 H 1.09003 * 117.49503 * 252.51984 * 15 14 13 41 41 H 1.09005 * 109.58916 * 66.42753 * 16 5 4 42 42 H 1.09000 * 109.58949 * 186.70759 * 16 5 4 43 43 H 1.09005 * 109.49893 * 174.58499 * 17 16 5 44 44 H 1.08995 * 109.49925 * 294.65161 * 17 16 5 45 45 H 1.09001 * 109.47306 * 294.92726 * 20 18 2 46 46 H 1.08997 * 109.47124 * 54.93516 * 20 18 2 47 47 H 0.96993 * 119.99944 * 359.97438 * 21 20 18 48 48 H 0.96994 * 119.99419 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0423 -0.7186 -1.2469 5 7 3.5054 -0.8283 -1.1687 6 6 4.2820 -0.3846 -2.1770 7 8 3.7816 0.2035 -3.1163 8 6 5.7379 -0.6122 -2.1408 9 6 6.4237 -1.6920 -1.6404 10 8 7.7196 -1.4349 -1.8307 11 7 7.9187 -0.3743 -2.3704 12 6 6.8149 0.2599 -2.6342 13 6 6.6698 1.6047 -3.2988 14 6 7.2259 1.7560 -4.7161 15 6 7.9454 2.4163 -3.5382 16 6 4.1060 -1.4254 0.0319 17 6 3.5708 -0.6938 1.2668 18 6 2.0407 -0.7227 1.2487 19 1 1.6971 -1.7570 1.2357 20 6 1.5028 -0.0228 2.4984 21 7 1.8909 -0.7832 3.6890 22 6 1.5186 -0.3459 4.9321 23 1 0.9392 0.5598 5.0348 24 6 1.8859 -1.0667 6.0603 25 7 2.5915 -2.1706 5.9349 26 14 1.3786 -0.4697 7.7560 27 1 0.5975 0.7865 7.6254 28 1 0.5443 -1.5056 8.4164 29 1 2.5912 -0.2152 8.5744 30 1 -0.3634 0.5129 0.8904 31 1 -0.3633 0.5148 -0.8895 32 1 -0.3634 -1.0276 -0.0005 33 1 1.7654 -0.1498 -2.1344 34 1 1.6033 -1.7151 -1.2972 35 1 5.9989 -2.5719 -1.1802 36 1 5.7616 2.1550 -3.0530 37 1 7.6963 0.8827 -5.1680 38 1 6.6835 2.4058 -5.4028 39 1 8.8894 1.9776 -3.2152 40 1 7.8760 3.5005 -3.4499 41 1 3.8387 -2.4807 0.0879 42 1 5.1904 -1.3251 -0.0135 43 1 3.9333 -1.1882 2.1681 44 1 3.9158 0.3400 1.2551 45 1 1.9181 0.9832 2.5586 46 1 0.4158 0.0355 2.4428 47 1 2.4109 -1.5968 3.5967 48 1 2.8484 -2.6740 6.7232 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001185115138.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:34:43 Heat of formation + Delta-G solvation = 43.115918 kcal Electronic energy + Delta-G solvation = -29063.171056 eV Core-core repulsion = 25121.731541 eV Total energy + Delta-G solvation = -3941.439514 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -46.02685 -41.36662 -39.25247 -38.44768 -36.59295 -35.29671 -34.18435 -33.48221 -32.81898 -32.01890 -28.50450 -28.06298 -26.02877 -25.58690 -24.94085 -23.67809 -23.36778 -22.71734 -21.41423 -21.31566 -20.56117 -19.15719 -18.85469 -18.58960 -17.87722 -17.26823 -16.73492 -16.57900 -16.29419 -15.78181 -15.71684 -15.53003 -15.24712 -15.09659 -14.63681 -14.45737 -14.24251 -13.95564 -13.83719 -13.18500 -13.15410 -12.95012 -12.94058 -12.87393 -12.73908 -12.66575 -12.58004 -12.36728 -12.13855 -11.96915 -11.89246 -11.62984 -11.55625 -11.45569 -11.23472 -11.17103 -10.90794 -10.65245 -10.58540 -9.71811 -8.94540 -7.93949 -5.20714 0.07847 0.62595 1.47804 1.48511 1.56833 1.57896 1.91061 2.19306 2.56882 2.78274 2.86449 3.17883 3.39881 3.50992 3.70204 3.73836 3.81522 3.83349 3.87927 3.98872 3.99333 4.01008 4.23464 4.30832 4.38907 4.52441 4.53826 4.62441 4.64487 4.64772 4.70041 4.74529 4.80239 4.85710 4.88564 4.99989 5.02571 5.11117 5.12395 5.13655 5.21725 5.29091 5.36934 5.48281 5.52852 5.60485 6.23444 6.29804 6.95806 7.14417 7.36725 8.13075 8.37659 9.29478 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.014899 B = 0.002690 C = 0.002486 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1878.839983 B =10404.649594 C =11261.697844 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.088 4.088 3 H 0.060 0.940 4 C 0.123 3.877 5 N -0.596 5.596 6 C 0.598 3.402 7 O -0.565 6.565 8 C -0.270 4.270 9 C 0.021 3.979 10 O 0.100 5.900 11 N -0.373 5.373 12 C 0.084 3.916 13 C -0.109 4.109 14 C -0.147 4.147 15 C -0.154 4.154 16 C 0.100 3.900 17 C -0.121 4.121 18 C -0.078 4.078 19 H 0.077 0.923 20 C 0.156 3.844 21 N -0.740 5.740 22 C -0.242 4.242 23 H 0.069 0.931 24 C -0.072 4.072 25 N -0.965 5.965 26 Si 0.967 3.033 27 H -0.270 1.270 28 H -0.292 1.292 29 H -0.294 1.294 30 H 0.054 0.946 31 H 0.068 0.932 32 H 0.065 0.935 33 H 0.087 0.913 34 H 0.090 0.910 35 H 0.271 0.729 36 H 0.120 0.880 37 H 0.092 0.908 38 H 0.120 0.880 39 H 0.096 0.904 40 H 0.121 0.879 41 H 0.103 0.897 42 H 0.100 0.900 43 H 0.071 0.929 44 H 0.049 0.951 45 H 0.006 0.994 46 H 0.027 0.973 47 H 0.377 0.623 48 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.551 1.676 -20.996 22.059 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.108 4.108 3 H 0.079 0.921 4 C 0.001 3.999 5 N -0.327 5.327 6 C 0.386 3.614 7 O -0.445 6.445 8 C -0.278 4.278 9 C -0.061 4.061 10 O 0.041 5.959 11 N -0.080 5.080 12 C -0.077 4.077 13 C -0.128 4.128 14 C -0.185 4.185 15 C -0.191 4.191 16 C -0.022 4.022 17 C -0.159 4.159 18 C -0.097 4.097 19 H 0.095 0.905 20 C 0.029 3.971 21 N -0.384 5.384 22 C -0.375 4.375 23 H 0.087 0.913 24 C -0.264 4.264 25 N -0.616 5.616 26 Si 0.797 3.203 27 H -0.195 1.195 28 H -0.220 1.220 29 H -0.221 1.221 30 H 0.073 0.927 31 H 0.087 0.913 32 H 0.084 0.916 33 H 0.105 0.895 34 H 0.109 0.891 35 H 0.286 0.714 36 H 0.138 0.862 37 H 0.110 0.890 38 H 0.138 0.862 39 H 0.114 0.886 40 H 0.140 0.860 41 H 0.121 0.879 42 H 0.118 0.882 43 H 0.089 0.911 44 H 0.068 0.932 45 H 0.024 0.976 46 H 0.045 0.955 47 H 0.210 0.790 48 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 7.490 2.339 -21.547 22.931 hybrid contribution -0.988 0.040 1.480 1.780 sum 6.502 2.379 -20.067 21.228 Atomic orbital electron populations 1.21797 0.93272 1.02816 1.02267 1.21281 0.96971 0.99120 0.93454 0.92149 1.21666 0.77803 1.01996 0.98400 1.48008 1.07255 1.59947 1.17537 1.17019 0.84310 0.77969 0.82079 1.90763 1.75023 1.42872 1.35880 1.22160 0.95042 0.98756 1.11825 1.27259 0.82279 1.00587 0.95978 1.84568 1.26263 1.28437 1.56629 1.73599 1.23451 0.96137 1.14833 1.24075 0.86824 0.97813 0.99031 1.20307 1.00571 0.91026 1.00874 1.23073 1.02399 1.03279 0.89789 1.23123 0.94404 1.00153 1.01407 1.22240 0.99135 0.98484 0.82325 1.21814 0.95576 1.00615 0.97916 1.21229 0.95078 0.99995 0.93373 0.90510 1.20890 0.96805 0.93455 0.85902 1.42536 1.65247 1.29099 1.01477 1.19607 1.26668 1.05871 0.85308 0.91266 1.25455 1.01742 0.98056 1.01163 1.69784 1.44338 1.18427 1.29010 0.85166 0.77113 0.77533 0.80521 1.19484 1.21962 1.22119 0.92702 0.91254 0.91637 0.89470 0.89142 0.71373 0.86163 0.88963 0.86175 0.88568 0.86046 0.87880 0.88245 0.91090 0.93195 0.97637 0.95538 0.79029 0.93997 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.05 8.82 71.98 0.63 -2.42 16 2 C -0.09 -2.07 2.40 -10.86 -0.03 -2.10 16 3 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 4 C 0.12 2.57 5.70 86.22 0.49 3.06 16 5 N -0.60 -12.74 2.98 -823.66 -2.45 -15.19 16 6 C 0.60 14.96 7.66 86.66 0.66 15.63 16 7 O -0.57 -17.74 16.50 -4.03 -0.07 -17.81 16 8 C -0.27 -5.92 5.69 -18.74 -0.11 -6.02 16 9 C 0.02 0.31 9.98 67.61 0.67 0.98 16 10 O 0.10 1.91 11.06 77.07 0.85 2.77 16 11 N -0.37 -8.72 11.71 -44.78 -0.52 -9.24 16 12 C 0.08 2.01 7.08 45.16 0.32 2.33 16 13 C -0.11 -2.37 6.29 -11.51 -0.07 -2.44 16 14 C -0.15 -2.56 10.23 30.60 0.31 -2.25 16 15 C -0.15 -2.62 10.17 30.62 0.31 -2.31 16 16 C 0.10 1.85 5.49 86.36 0.47 2.33 16 17 C -0.12 -3.22 5.25 30.67 0.16 -3.06 16 18 C -0.08 -2.19 1.73 -10.76 -0.02 -2.21 16 19 H 0.08 2.15 8.14 -2.39 -0.02 2.13 16 20 C 0.16 5.89 5.41 86.38 0.47 6.36 16 21 N -0.74 -35.80 5.32 -343.42 -1.83 -37.63 16 22 C -0.24 -13.26 9.99 84.04 0.84 -12.42 16 23 H 0.07 3.71 7.83 -2.91 -0.02 3.69 16 24 C -0.07 -4.02 5.50 84.86 0.47 -3.55 16 25 N -0.96 -56.97 13.06 21.65 0.28 -56.69 16 26 Si 0.97 45.42 29.55 68.60 2.03 47.44 16 27 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 28 H -0.29 -13.69 7.11 99.48 0.71 -12.98 16 29 H -0.29 -13.82 7.11 99.48 0.71 -13.11 16 30 H 0.05 1.32 6.29 -2.39 -0.02 1.31 16 31 H 0.07 1.24 8.14 -2.38 -0.02 1.22 16 32 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 33 H 0.09 1.98 7.00 -2.39 -0.02 1.96 16 34 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 35 H 0.27 1.43 7.06 -2.91 -0.02 1.41 16 36 H 0.12 2.81 8.14 -2.39 -0.02 2.79 16 37 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 38 H 0.12 1.68 8.14 -2.39 -0.02 1.66 16 39 H 0.10 1.76 7.97 -2.39 -0.02 1.74 16 40 H 0.12 1.60 8.14 -2.39 -0.02 1.58 16 41 H 0.10 1.45 8.14 -2.38 -0.02 1.43 16 42 H 0.10 1.54 4.54 -2.39 -0.01 1.53 16 43 H 0.07 2.21 7.15 -2.38 -0.02 2.19 16 44 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 45 H 0.01 0.23 8.14 -2.39 -0.02 0.21 16 46 H 0.03 1.01 6.14 -2.39 -0.01 1.00 16 47 H 0.38 18.92 6.85 -92.71 -0.63 18.28 16 48 H 0.25 14.38 8.31 -92.71 -0.77 13.61 16 Total: -1.00 -70.91 385.72 4.23 -66.67 By element: Atomic # 1 Polarization: 27.42 SS G_CDS: 0.35 Total: 27.76 kcal Atomic # 6 Polarization: -13.68 SS G_CDS: 5.59 Total: -8.09 kcal Atomic # 7 Polarization: -114.23 SS G_CDS: -4.52 Total: -118.75 kcal Atomic # 8 Polarization: -15.83 SS G_CDS: 0.79 Total: -15.04 kcal Atomic # 14 Polarization: 45.42 SS G_CDS: 2.03 Total: 47.44 kcal Total: -70.91 4.23 -66.67 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001185115138.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.790 kcal (2) G-P(sol) polarization free energy of solvation -70.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.885 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.231 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.674 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.116 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds