Wall clock time and date at job start Tue Mar 31 2020 17:31:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08996 * 109.49706 * 2 1 4 4 C 1.53617 * 109.63370 * 239.89755 * 2 1 3 5 5 N 1.46930 * 108.54776 * 294.86478 * 4 2 1 6 6 C 1.34773 * 120.63203 * 126.36646 * 5 4 2 7 7 O 1.21534 * 120.00168 * 354.72629 * 6 5 4 8 8 C 1.47890 * 119.99753 * 174.99665 * 6 5 4 9 9 C 1.36297 * 119.75337 * 87.95139 * 8 6 5 10 10 C 1.40406 * 119.90196 * 179.75021 * 9 8 6 11 11 C 1.36114 * 119.41476 * 0.50110 * 10 9 8 12 12 C 1.41235 * 119.50988 * 359.77288 * 11 10 9 13 13 O 1.21962 * 119.95296 * 179.97438 * 12 11 10 14 14 N 1.34672 * 120.08980 * 359.97438 * 12 11 10 15 15 C 1.46497 * 119.70359 * 180.02562 * 14 12 11 16 16 C 1.46927 * 118.73288 * 306.09833 * 5 4 2 17 17 C 1.53189 * 108.77833 * 53.85659 * 16 5 4 18 18 C 1.53034 * 109.31419 * 305.36433 * 17 16 5 19 19 H 1.09005 * 109.45978 * 301.34298 * 18 17 16 20 20 C 1.52998 * 109.45989 * 181.38715 * 18 17 16 21 21 N 1.46497 * 109.47357 * 64.99862 * 20 18 17 22 22 C 1.36940 * 119.99772 * 179.97438 * 21 20 18 23 23 H 1.07994 * 120.00452 * 0.02562 * 22 21 20 24 24 C 1.38820 * 119.99367 * 180.02562 * 22 21 20 25 25 N 1.31614 * 120.00179 * 0.02562 * 24 22 21 26 26 Si 1.86798 * 119.99494 * 179.97438 * 24 22 21 27 27 H 1.48502 * 109.47223 * 59.99843 * 26 24 22 28 28 H 1.48500 * 109.47394 * 179.97438 * 26 24 22 29 29 H 1.48498 * 109.47268 * 299.99858 * 26 24 22 30 30 H 1.08997 * 109.47241 * 299.93210 * 1 2 3 31 31 H 1.09002 * 109.47387 * 59.93853 * 1 2 3 32 32 H 1.08999 * 109.46873 * 179.97438 * 1 2 3 33 33 H 1.09003 * 109.74030 * 175.12978 * 4 2 1 34 34 H 1.08999 * 109.66944 * 54.55839 * 4 2 1 35 35 H 1.08000 * 120.04845 * 0.02562 * 9 8 6 36 36 H 1.08001 * 120.28891 * 180.29313 * 10 9 8 37 37 H 1.07999 * 120.24039 * 179.79835 * 11 10 9 38 38 H 1.08993 * 109.47162 * 274.49540 * 15 14 12 39 39 H 1.09004 * 109.46904 * 34.49472 * 15 14 12 40 40 H 1.09003 * 109.46967 * 154.49073 * 15 14 12 41 41 H 1.09006 * 109.58624 * 173.64467 * 16 5 4 42 42 H 1.08998 * 109.58663 * 293.92665 * 16 5 4 43 43 H 1.09004 * 109.49471 * 65.31856 * 17 16 5 44 44 H 1.09005 * 109.49376 * 185.37623 * 17 16 5 45 45 H 1.09002 * 109.47055 * 184.99918 * 20 18 17 46 46 H 1.08998 * 109.46938 * 304.99600 * 20 18 17 47 47 H 0.97002 * 120.00222 * 359.97438 * 21 20 18 48 48 H 0.97003 * 119.99498 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0462 -0.7257 -1.2517 5 7 1.6516 -2.1386 -1.1689 6 6 0.9748 -2.7228 -2.1774 7 8 0.6015 -2.0582 -3.1240 8 6 0.6813 -4.1714 -2.1294 9 6 -0.4534 -4.6116 -1.5159 10 6 -0.7379 -5.9859 -1.4731 11 6 0.1324 -6.8666 -2.0385 12 6 1.3037 -6.3837 -2.6626 13 8 2.0892 -7.1657 -3.1714 14 7 1.5543 -5.0610 -2.6967 15 6 2.7716 -4.5693 -3.3469 16 6 2.0140 -2.9040 0.0317 17 6 1.5030 -2.1553 1.2667 18 6 2.0408 -0.7227 1.2486 19 1 3.1305 -0.7440 1.2356 20 6 1.5606 0.0177 2.4984 21 7 2.1480 -0.6018 3.6889 22 6 1.8600 -0.1049 4.9321 23 1 1.1996 0.7434 5.0349 24 6 2.4170 -0.6917 6.0601 25 7 3.2222 -1.7252 5.9348 26 14 2.0248 -0.0134 7.7558 27 1 0.5613 -0.0941 7.9949 28 1 2.7387 -0.8108 8.7853 29 1 2.4620 1.4035 7.8355 30 1 -0.3633 0.5128 0.8906 31 1 -0.3634 0.5148 -0.8894 32 1 -0.3633 -1.0277 -0.0005 33 1 3.1327 -0.6520 -1.2982 34 1 1.6089 -0.2759 -2.1431 35 1 -1.1350 -3.9041 -1.0673 36 1 -1.6376 -6.3413 -0.9927 37 1 -0.0716 -7.9268 -2.0103 38 1 3.5984 -4.5956 -2.6372 39 1 3.0071 -5.2017 -4.2028 40 1 2.6147 -3.5448 -3.6843 41 1 1.5554 -3.8919 -0.0125 42 1 3.0978 -3.0063 0.0864 43 1 0.4132 -2.1351 1.2547 44 1 1.8476 -2.6625 2.1679 45 1 1.8685 1.0619 2.4428 46 1 0.4737 -0.0379 2.5585 47 1 2.7408 -1.3640 3.5967 48 1 3.6111 -2.1354 6.7231 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001185128561.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:31:42 Heat of formation + Delta-G solvation = -40.746711 kcal Electronic energy + Delta-G solvation = -29686.233490 eV Core-core repulsion = 25741.157419 eV Total energy + Delta-G solvation = -3945.076071 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -42.76468 -41.28831 -39.43410 -37.92159 -36.60479 -35.69662 -34.89951 -33.25391 -32.00423 -31.42925 -28.75989 -28.51587 -28.03933 -25.98815 -25.13958 -24.23371 -23.77681 -22.94197 -21.52670 -19.76641 -19.26927 -18.78058 -18.50537 -18.10179 -17.60828 -16.98727 -16.78058 -16.37892 -16.26667 -15.81889 -15.65161 -15.46085 -15.33252 -15.05300 -14.87738 -14.44912 -14.31466 -13.98339 -13.82044 -13.70668 -13.61139 -13.48679 -13.09516 -12.95838 -12.94452 -12.75216 -12.66648 -12.39887 -12.22500 -12.04155 -11.88434 -11.74816 -11.55808 -11.30016 -11.22133 -11.15858 -10.96436 -10.85476 -9.82768 -9.17501 -8.93250 -7.92187 -5.19115 -0.43302 0.65661 0.83863 1.49600 1.50313 1.51164 1.57357 1.84777 2.48000 2.58546 2.91357 3.41735 3.49502 3.70102 3.74126 3.80983 3.89494 4.00742 4.03946 4.16420 4.19487 4.21454 4.31519 4.34423 4.37216 4.45312 4.53322 4.67852 4.69884 4.73009 4.76871 4.85068 4.87267 4.96270 4.98758 5.10045 5.18226 5.18546 5.20596 5.27551 5.30332 5.36877 5.47545 5.54415 5.62553 5.83319 6.05643 6.30881 6.69382 6.80525 7.37989 8.15693 8.38396 9.30800 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.015108 B = 0.002925 C = 0.002664 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1852.898038 B = 9568.814065 C =10507.081753 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.090 4.090 3 H 0.094 0.906 4 C 0.117 3.883 5 N -0.581 5.581 6 C 0.567 3.433 7 O -0.548 6.548 8 C 0.111 3.889 9 C -0.177 4.177 10 C 0.000 4.000 11 C -0.239 4.239 12 C 0.502 3.498 13 O -0.594 6.594 14 N -0.485 5.485 15 C 0.055 3.945 16 C 0.111 3.889 17 C -0.118 4.118 18 C -0.079 4.079 19 H 0.068 0.932 20 C 0.158 3.842 21 N -0.742 5.742 22 C -0.244 4.244 23 H 0.072 0.928 24 C -0.071 4.071 25 N -0.966 5.966 26 Si 0.967 3.033 27 H -0.279 1.279 28 H -0.296 1.296 29 H -0.281 1.281 30 H 0.053 0.947 31 H 0.059 0.941 32 H 0.052 0.948 33 H 0.090 0.910 34 H 0.095 0.905 35 H 0.169 0.831 36 H 0.183 0.817 37 H 0.166 0.834 38 H 0.091 0.909 39 H 0.091 0.909 40 H 0.088 0.912 41 H 0.090 0.910 42 H 0.084 0.916 43 H 0.072 0.928 44 H 0.064 0.936 45 H 0.014 0.986 46 H 0.022 0.978 47 H 0.375 0.625 48 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.821 -3.653 -18.192 19.770 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.109 4.109 3 H 0.113 0.887 4 C -0.004 4.004 5 N -0.312 5.312 6 C 0.352 3.648 7 O -0.425 6.425 8 C 0.001 3.999 9 C -0.201 4.201 10 C -0.021 4.021 11 C -0.261 4.261 12 C 0.306 3.694 13 O -0.480 6.480 14 N -0.197 5.197 15 C -0.087 4.087 16 C -0.011 4.011 17 C -0.156 4.156 18 C -0.098 4.098 19 H 0.087 0.913 20 C 0.032 3.968 21 N -0.385 5.385 22 C -0.376 4.376 23 H 0.090 0.910 24 C -0.264 4.264 25 N -0.617 5.617 26 Si 0.797 3.203 27 H -0.205 1.205 28 H -0.223 1.223 29 H -0.207 1.207 30 H 0.072 0.928 31 H 0.078 0.922 32 H 0.071 0.929 33 H 0.109 0.891 34 H 0.114 0.886 35 H 0.186 0.814 36 H 0.200 0.800 37 H 0.183 0.817 38 H 0.109 0.891 39 H 0.110 0.890 40 H 0.107 0.893 41 H 0.108 0.892 42 H 0.102 0.898 43 H 0.090 0.910 44 H 0.083 0.917 45 H 0.032 0.968 46 H 0.040 0.960 47 H 0.208 0.792 48 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -6.537 -3.612 -18.918 20.339 hybrid contribution 0.314 0.027 1.208 1.249 sum -6.223 -3.585 -17.710 19.111 Atomic orbital electron populations 1.21828 0.94671 1.01777 1.01678 1.21485 0.96695 0.99918 0.92821 0.88747 1.21976 1.00744 0.78635 0.99037 1.48141 1.53242 1.12481 1.17380 1.17962 0.78142 0.85878 0.82793 1.90853 1.52375 1.64368 1.34922 1.20324 0.92975 0.89543 0.97027 1.21186 0.96852 0.98124 1.03890 1.21779 0.98521 0.90966 0.90806 1.22486 0.94939 1.03108 1.05560 1.17792 0.88965 0.80234 0.82431 1.90916 1.51454 1.54303 1.51355 1.45498 1.20590 1.07163 1.46476 1.22285 0.85410 1.01110 0.99846 1.21894 1.01464 0.94869 0.82897 1.21819 1.01511 0.95407 0.96876 1.21202 1.00080 0.94861 0.93693 0.91313 1.20851 0.95600 0.94662 0.85677 1.42558 1.56874 1.37514 1.01575 1.19560 1.22226 1.10509 0.85300 0.91046 1.25456 1.00644 0.99080 1.01211 1.69780 1.36990 1.25822 1.29121 0.85309 0.77562 0.77430 0.80047 1.20503 1.22271 1.20688 0.92768 0.92205 0.92914 0.89145 0.88622 0.81352 0.79978 0.81682 0.89091 0.89011 0.89305 0.89159 0.89810 0.90963 0.91727 0.96758 0.96000 0.79208 0.94088 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.90 8.39 71.98 0.60 -2.30 16 2 C -0.09 -1.79 2.72 -10.57 -0.03 -1.82 16 3 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 4 C 0.12 2.06 5.88 86.51 0.51 2.56 16 5 N -0.58 -10.69 2.40 -821.44 -1.97 -12.66 16 6 C 0.57 11.73 5.30 86.80 0.46 12.19 16 7 O -0.55 -14.44 16.39 -3.82 -0.06 -14.50 16 8 C 0.11 2.12 4.59 40.45 0.19 2.31 16 9 C -0.18 -2.61 9.22 22.35 0.21 -2.41 16 10 C 0.00 0.01 10.08 22.30 0.22 0.23 16 11 C -0.24 -4.23 10.00 22.51 0.23 -4.00 16 12 C 0.50 12.36 7.43 84.99 0.63 12.99 16 13 O -0.59 -19.06 16.72 -5.19 -0.09 -19.15 16 14 N -0.48 -10.31 3.02 -660.61 -1.99 -12.30 16 15 C 0.05 1.01 9.98 127.77 1.27 2.29 16 16 C 0.11 2.08 6.32 86.36 0.55 2.62 16 17 C -0.12 -2.87 4.90 30.67 0.15 -2.72 16 18 C -0.08 -2.06 1.96 -10.77 -0.02 -2.08 16 19 H 0.07 1.87 8.14 -2.38 -0.02 1.85 16 20 C 0.16 5.63 5.18 86.38 0.45 6.08 16 21 N -0.74 -35.02 5.32 -343.46 -1.83 -36.84 16 22 C -0.24 -13.07 9.99 84.03 0.84 -12.23 16 23 H 0.07 3.71 7.83 -2.91 -0.02 3.68 16 24 C -0.07 -3.96 5.50 84.86 0.47 -3.49 16 25 N -0.97 -56.90 13.06 21.65 0.28 -56.62 16 26 Si 0.97 44.79 29.55 68.60 2.03 46.82 16 27 H -0.28 -12.45 7.11 99.48 0.71 -11.75 16 28 H -0.30 -13.88 7.11 99.48 0.71 -13.18 16 29 H -0.28 -12.60 7.11 99.48 0.71 -11.90 16 30 H 0.05 1.21 6.58 -2.39 -0.02 1.20 16 31 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 32 H 0.05 1.09 5.97 -2.39 -0.01 1.08 16 33 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 34 H 0.10 1.75 7.00 -2.39 -0.02 1.73 16 35 H 0.17 1.89 8.06 -2.91 -0.02 1.87 16 36 H 0.18 0.85 8.06 -2.91 -0.02 0.82 16 37 H 0.17 2.43 8.06 -2.91 -0.02 2.40 16 38 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 39 H 0.09 1.79 7.53 -2.39 -0.02 1.78 16 40 H 0.09 1.55 6.62 -2.39 -0.02 1.54 16 41 H 0.09 1.57 6.01 -2.38 -0.01 1.56 16 42 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 43 H 0.07 1.73 6.34 -2.39 -0.02 1.72 16 44 H 0.06 1.96 7.15 -2.38 -0.02 1.94 16 45 H 0.01 0.53 8.14 -2.39 -0.02 0.51 16 46 H 0.02 0.79 6.74 -2.39 -0.02 0.78 16 47 H 0.38 18.67 6.85 -92.71 -0.63 18.03 16 48 H 0.25 14.42 8.31 -92.71 -0.77 13.65 16 Total: -1.00 -72.05 379.32 3.43 -68.62 By element: Atomic # 1 Polarization: 26.07 SS G_CDS: 0.34 Total: 26.42 kcal Atomic # 6 Polarization: 3.50 SS G_CDS: 6.72 Total: 10.22 kcal Atomic # 7 Polarization: -112.92 SS G_CDS: -5.51 Total: -118.43 kcal Atomic # 8 Polarization: -33.49 SS G_CDS: -0.15 Total: -33.64 kcal Atomic # 14 Polarization: 44.79 SS G_CDS: 2.03 Total: 46.82 kcal Total: -72.05 3.43 -68.62 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001185128561.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.872 kcal (2) G-P(sol) polarization free energy of solvation -72.053 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.181 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.619 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.747 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds