Wall clock time and date at job start Tue Mar 31 2020 17:31:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09001 * 109.49576 * 2 1 4 4 C 1.53191 * 109.49793 * 239.94065 * 2 1 3 5 5 N 1.46921 * 108.89669 * 185.34221 * 4 2 1 6 6 C 1.34786 * 120.63108 * 233.68031 * 5 4 2 7 7 O 1.21543 * 119.99485 * 354.88936 * 6 5 4 8 8 C 1.47877 * 120.00009 * 174.89359 * 6 5 4 9 9 C 1.36300 * 119.75649 * 274.94806 * 8 6 5 10 10 C 1.40408 * 119.90428 * 179.77510 * 9 8 6 11 11 C 1.36109 * 119.41746 * 0.52446 * 10 9 8 12 12 C 1.41241 * 119.50854 * 359.73314 * 11 10 9 13 13 O 1.21962 * 119.95634 * 180.02562 * 12 11 10 14 14 N 1.34674 * 120.08606 * 0.02562 * 12 11 10 15 15 C 1.46498 * 119.70157 * 180.02562 * 14 12 11 16 16 C 1.47202 * 118.55851 * 53.53381 * 5 4 2 17 17 C 1.53191 * 108.85416 * 306.48089 * 16 5 4 18 18 C 1.53038 * 109.50482 * 120.09811 * 2 1 3 19 19 H 1.09005 * 109.45380 * 61.29544 * 18 2 1 20 20 C 1.52996 * 109.45963 * 301.33916 * 18 2 1 21 21 N 1.46499 * 109.47249 * 174.99397 * 20 18 2 22 22 C 1.36940 * 119.99963 * 179.97438 * 21 20 18 23 23 H 1.08004 * 120.00081 * 359.97438 * 22 21 20 24 24 C 1.38809 * 119.99807 * 180.02562 * 22 21 20 25 25 N 1.31622 * 120.00176 * 0.02562 * 24 22 21 26 26 Si 1.86800 * 119.99854 * 179.97438 * 24 22 21 27 27 H 1.48501 * 109.47030 * 60.00165 * 26 24 22 28 28 H 1.48501 * 109.46826 * 180.02562 * 26 24 22 29 29 H 1.48495 * 109.47473 * 299.99977 * 26 24 22 30 30 H 1.08998 * 109.46878 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.47016 * 300.06134 * 1 2 3 32 32 H 1.09000 * 109.47861 * 60.06228 * 1 2 3 33 33 H 1.09006 * 109.58640 * 305.20161 * 4 2 1 34 34 H 1.09000 * 109.58969 * 65.47831 * 4 2 1 35 35 H 1.08001 * 120.04323 * 0.03387 * 9 8 6 36 36 H 1.08001 * 120.28738 * 180.27882 * 10 9 8 37 37 H 1.07998 * 120.24852 * 179.70770 * 11 10 9 38 38 H 1.09003 * 109.47112 * 274.95158 * 15 14 12 39 39 H 1.09001 * 109.47278 * 34.95028 * 15 14 12 40 40 H 1.08998 * 109.47725 * 154.95304 * 15 14 12 41 41 H 1.08997 * 109.53462 * 186.67859 * 16 5 4 42 42 H 1.08998 * 109.67400 * 66.37010 * 16 5 4 43 43 H 1.09001 * 109.49787 * 294.70065 * 17 16 5 44 44 H 1.09000 * 109.52245 * 174.61291 * 17 16 5 45 45 H 1.08998 * 109.47193 * 294.99654 * 20 18 2 46 46 H 1.09003 * 109.47100 * 54.99800 * 20 18 2 47 47 H 0.96998 * 120.00152 * 0.02562 * 21 20 18 48 48 H 0.97005 * 120.00216 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8937 1.0275 0.0000 4 6 2.0413 -0.7233 -1.2498 5 7 3.5047 -0.8286 -1.1734 6 6 4.2789 -0.3840 -2.1832 7 8 3.7668 0.0240 -3.2072 8 6 5.7512 -0.3927 -2.0452 9 6 6.3797 0.6524 -1.4366 10 6 7.7771 0.6452 -1.2997 11 6 8.4913 -0.4054 -1.7882 12 6 7.8151 -1.4729 -2.4193 13 8 8.4469 -2.4186 -2.8596 14 7 6.4736 -1.4477 -2.5355 15 6 5.7808 -2.5596 -3.1911 16 6 4.1053 -1.4266 0.0301 17 6 3.5709 -0.6953 1.2656 18 6 2.0409 -0.7234 1.2481 19 1 1.6968 -1.7576 1.2346 20 6 1.5039 -0.0240 2.4983 21 7 1.8933 -0.7843 3.6885 22 6 1.5227 -0.3467 4.9321 23 1 0.9437 0.5592 5.0355 24 6 1.8922 -1.0668 6.0598 25 7 2.5991 -2.1699 5.9339 26 14 1.3873 -0.4695 7.7562 27 1 -0.0941 -0.4085 7.8389 28 1 1.9029 -1.4080 8.7851 29 1 1.9524 0.8832 7.9933 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5148 0.8895 32 1 -0.3635 0.5128 -0.8905 33 1 1.6052 -1.7212 -1.2987 34 1 1.7615 -0.1585 -2.1391 35 1 5.8033 1.4830 -1.0565 36 1 8.2811 1.4680 -0.8145 37 1 9.5670 -0.4226 -1.6944 38 1 5.7738 -2.3983 -4.2691 39 1 6.2976 -3.4927 -2.9667 40 1 4.7555 -2.6152 -2.8255 41 1 5.1896 -1.3245 -0.0144 42 1 3.8397 -2.4822 0.0870 43 1 3.9160 0.3386 1.2540 44 1 3.9335 -1.1898 2.1668 45 1 1.9185 0.9822 2.5582 46 1 0.4167 0.0337 2.4437 47 1 2.4142 -1.5972 3.5958 48 1 2.8576 -2.6729 6.7220 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001185128562.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:31:45 Heat of formation + Delta-G solvation = -23.026117 kcal Electronic energy + Delta-G solvation = -29475.073637 eV Core-core repulsion = 25530.765988 eV Total energy + Delta-G solvation = -3944.307648 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.90949 -40.26321 -38.33710 -36.99638 -35.18673 -34.94732 -33.71254 -32.13696 -30.72969 -30.37135 -27.99047 -27.15132 -27.04359 -24.86934 -23.68322 -22.98472 -22.66712 -21.52365 -20.47603 -19.54371 -18.13628 -17.69393 -17.39492 -17.07452 -16.79293 -16.06845 -15.59634 -15.27908 -14.96034 -14.89435 -14.62788 -14.26569 -14.01534 -13.67792 -13.51751 -13.47115 -13.17311 -13.04321 -12.82576 -12.63714 -12.59099 -12.37859 -12.20565 -12.01716 -11.89905 -11.70428 -11.08034 -11.00323 -10.86397 -10.76204 -10.52040 -10.44949 -10.36426 -10.30148 -10.09351 -10.01404 -9.69917 -8.96300 -8.88118 -8.34286 -6.96283 -5.81664 -3.10006 0.31568 1.45571 1.70861 2.31452 2.66757 3.27937 3.40468 3.45391 3.46041 3.74109 4.24389 4.52849 4.53952 4.62653 4.74680 4.78235 4.81820 4.85750 4.94097 4.94954 5.02934 5.13289 5.26007 5.27682 5.34901 5.51193 5.52220 5.54964 5.62805 5.66071 5.71283 5.76334 5.83441 5.88948 5.94540 6.03101 6.07736 6.16336 6.19990 6.27309 6.37788 6.50291 6.65111 6.74215 6.83024 6.92339 7.55358 7.65053 7.68308 8.37577 9.48825 10.06313 10.40551 11.41098 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.013707 B = 0.002981 C = 0.002635 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2042.203773 B = 9388.998708 C =10622.553160 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.097 4.097 3 H 0.075 0.925 4 C 0.116 3.884 5 N -0.591 5.591 6 C 0.559 3.441 7 O -0.520 6.520 8 C 0.130 3.870 9 C -0.185 4.185 10 C -0.018 4.018 11 C -0.226 4.226 12 C 0.516 3.484 13 O -0.547 6.547 14 N -0.485 5.485 15 C 0.059 3.941 16 C 0.102 3.898 17 C -0.124 4.124 18 C -0.090 4.090 19 H 0.073 0.927 20 C 0.157 3.843 21 N -0.732 5.732 22 C -0.240 4.240 23 H 0.069 0.931 24 C -0.012 4.012 25 N -0.934 5.934 26 Si 0.906 3.094 27 H -0.286 1.286 28 H -0.291 1.291 29 H -0.286 1.286 30 H 0.057 0.943 31 H 0.070 0.930 32 H 0.052 0.948 33 H 0.074 0.926 34 H 0.093 0.907 35 H 0.151 0.849 36 H 0.144 0.856 37 H 0.154 0.846 38 H 0.081 0.919 39 H 0.098 0.902 40 H 0.081 0.919 41 H 0.080 0.920 42 H 0.078 0.922 43 H 0.067 0.933 44 H 0.093 0.907 45 H 0.017 0.983 46 H 0.025 0.975 47 H 0.383 0.617 48 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.880 3.897 -17.695 18.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.117 4.117 3 H 0.093 0.907 4 C -0.006 4.006 5 N -0.324 5.324 6 C 0.343 3.657 7 O -0.395 6.395 8 C 0.020 3.980 9 C -0.209 4.209 10 C -0.040 4.040 11 C -0.248 4.248 12 C 0.318 3.682 13 O -0.429 6.429 14 N -0.199 5.199 15 C -0.083 4.083 16 C -0.020 4.020 17 C -0.162 4.162 18 C -0.109 4.109 19 H 0.092 0.908 20 C 0.029 3.971 21 N -0.376 5.376 22 C -0.372 4.372 23 H 0.087 0.913 24 C -0.208 4.208 25 N -0.583 5.583 26 Si 0.737 3.263 27 H -0.213 1.213 28 H -0.217 1.217 29 H -0.213 1.213 30 H 0.076 0.924 31 H 0.089 0.911 32 H 0.071 0.929 33 H 0.092 0.908 34 H 0.111 0.889 35 H 0.168 0.832 36 H 0.162 0.838 37 H 0.171 0.829 38 H 0.099 0.901 39 H 0.117 0.883 40 H 0.100 0.900 41 H 0.098 0.902 42 H 0.096 0.904 43 H 0.086 0.914 44 H 0.111 0.889 45 H 0.035 0.965 46 H 0.042 0.958 47 H 0.217 0.783 48 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 4.900 3.531 -18.417 19.382 hybrid contribution -0.077 0.119 1.146 1.155 sum 4.823 3.650 -17.270 18.299 Atomic orbital electron populations 1.21831 0.94062 1.02350 1.02244 1.21469 0.96378 0.99957 0.93861 0.90664 1.21860 0.77403 1.01606 0.99682 1.48288 1.07492 1.58588 1.17991 1.17962 0.85138 0.78683 0.83893 1.90863 1.73777 1.46830 1.28056 1.20276 0.91963 0.89595 0.96183 1.20765 0.95369 0.99345 1.05450 1.21412 0.92941 0.97167 0.92436 1.22344 1.01889 0.95163 1.05419 1.17315 0.79991 0.88906 0.82020 1.90948 1.63998 1.36420 1.51558 1.45507 1.08351 1.17968 1.48063 1.22200 0.97496 0.89704 0.98853 1.22051 0.98006 0.97883 0.84097 1.21926 0.96133 1.01250 0.96907 1.21363 0.94544 1.00342 0.94646 0.90817 1.20743 0.96721 0.94049 0.85538 1.42360 1.65418 1.29007 1.00831 1.19171 1.27886 1.06277 0.83821 0.91331 1.24715 1.00832 0.97488 0.97802 1.69636 1.42588 1.17290 1.28744 0.86285 0.78065 0.77679 0.84259 1.21296 1.21682 1.21288 0.92403 0.91111 0.92899 0.90776 0.88886 0.83151 0.83799 0.82867 0.90089 0.88350 0.90005 0.90162 0.90376 0.91437 0.88907 0.96531 0.95751 0.78333 0.93459 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.53 8.81 37.15 0.33 -1.21 16 2 C -0.10 -1.07 2.42 -90.50 -0.22 -1.29 16 3 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 4 C 0.12 1.18 5.69 -3.71 -0.02 1.16 16 5 N -0.59 -6.21 2.98 -173.65 -0.52 -6.73 16 6 C 0.56 6.45 5.23 -12.31 -0.06 6.39 16 7 O -0.52 -7.43 16.54 5.33 0.09 -7.34 16 8 C 0.13 1.39 4.44 -82.34 -0.37 1.02 16 9 C -0.19 -1.66 9.52 -39.46 -0.38 -2.04 16 10 C -0.02 -0.14 10.08 -39.53 -0.40 -0.54 16 11 C -0.23 -2.21 10.00 -39.21 -0.39 -2.61 16 12 C 0.52 6.51 7.43 -15.17 -0.11 6.40 16 13 O -0.55 -8.62 16.72 4.95 0.08 -8.54 16 14 N -0.49 -5.44 3.02 -122.81 -0.37 -5.81 16 15 C 0.06 0.57 9.98 59.85 0.60 1.16 16 16 C 0.10 1.06 6.36 -3.56 -0.02 1.03 16 17 C -0.12 -1.59 5.25 -26.61 -0.14 -1.72 16 18 C -0.09 -1.23 1.73 -90.58 -0.16 -1.38 16 19 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 20 C 0.16 2.83 5.41 -4.04 -0.02 2.81 16 21 N -0.73 -17.20 5.32 -59.91 -0.32 -17.52 16 22 C -0.24 -6.45 9.99 -15.06 -0.15 -6.60 16 23 H 0.07 1.80 7.83 -52.48 -0.41 1.38 16 24 C -0.01 -0.34 5.50 -17.43 -0.10 -0.44 16 25 N -0.93 -27.19 13.06 55.49 0.72 -26.46 16 26 Si 0.91 21.79 29.55 -169.99 -5.02 16.77 16 27 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 28 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 29 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 30 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.07 0.82 6.30 -51.93 -0.33 0.49 16 32 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.09 0.99 7.03 -51.93 -0.37 0.62 16 35 H 0.15 1.14 8.06 -52.49 -0.42 0.72 16 36 H 0.14 0.70 8.06 -52.49 -0.42 0.27 16 37 H 0.15 1.26 8.06 -52.49 -0.42 0.84 16 38 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.10 0.93 7.55 -51.93 -0.39 0.54 16 40 H 0.08 0.72 6.69 -51.93 -0.35 0.37 16 41 H 0.08 0.80 6.21 -51.93 -0.32 0.48 16 42 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 43 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 44 H 0.09 1.41 7.15 -51.93 -0.37 1.04 16 45 H 0.02 0.31 8.14 -51.93 -0.42 -0.11 16 46 H 0.02 0.45 6.14 -51.93 -0.32 0.13 16 47 H 0.38 9.39 6.84 -40.82 -0.28 9.11 16 48 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 LS Contribution 383.87 15.07 5.78 5.78 Total: -1.00 -33.15 383.87 -8.51 -41.66 By element: Atomic # 1 Polarization: 13.39 SS G_CDS: -7.34 Total: 6.04 kcal Atomic # 6 Polarization: 3.76 SS G_CDS: -1.61 Total: 2.15 kcal Atomic # 7 Polarization: -56.04 SS G_CDS: -0.48 Total: -56.53 kcal Atomic # 8 Polarization: -16.05 SS G_CDS: 0.17 Total: -15.88 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.77 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -33.15 -8.51 -41.66 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001185128562.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.632 kcal (2) G-P(sol) polarization free energy of solvation -33.153 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.521 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.505 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.659 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.026 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds