Wall clock time and date at job start Tue Mar 31 2020 17:31:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09001 * 109.49576 * 2 1 4 4 C 1.53191 * 109.49793 * 239.94065 * 2 1 3 5 5 N 1.46921 * 108.89669 * 185.34221 * 4 2 1 6 6 C 1.34786 * 120.63108 * 233.68031 * 5 4 2 7 7 O 1.21543 * 119.99485 * 354.88936 * 6 5 4 8 8 C 1.47877 * 120.00009 * 174.89359 * 6 5 4 9 9 C 1.36300 * 119.75649 * 274.94806 * 8 6 5 10 10 C 1.40408 * 119.90428 * 179.77510 * 9 8 6 11 11 C 1.36109 * 119.41746 * 0.52446 * 10 9 8 12 12 C 1.41241 * 119.50854 * 359.73314 * 11 10 9 13 13 O 1.21962 * 119.95634 * 180.02562 * 12 11 10 14 14 N 1.34674 * 120.08606 * 0.02562 * 12 11 10 15 15 C 1.46498 * 119.70157 * 180.02562 * 14 12 11 16 16 C 1.47202 * 118.55851 * 53.53381 * 5 4 2 17 17 C 1.53191 * 108.85416 * 306.48089 * 16 5 4 18 18 C 1.53038 * 109.50482 * 120.09811 * 2 1 3 19 19 H 1.09005 * 109.45380 * 61.29544 * 18 2 1 20 20 C 1.52996 * 109.45963 * 301.33916 * 18 2 1 21 21 N 1.46499 * 109.47249 * 174.99397 * 20 18 2 22 22 C 1.36940 * 119.99963 * 179.97438 * 21 20 18 23 23 H 1.08004 * 120.00081 * 359.97438 * 22 21 20 24 24 C 1.38809 * 119.99807 * 180.02562 * 22 21 20 25 25 N 1.31622 * 120.00176 * 0.02562 * 24 22 21 26 26 Si 1.86800 * 119.99854 * 179.97438 * 24 22 21 27 27 H 1.48501 * 109.47030 * 60.00165 * 26 24 22 28 28 H 1.48501 * 109.46826 * 180.02562 * 26 24 22 29 29 H 1.48495 * 109.47473 * 299.99977 * 26 24 22 30 30 H 1.08998 * 109.46878 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.47016 * 300.06134 * 1 2 3 32 32 H 1.09000 * 109.47861 * 60.06228 * 1 2 3 33 33 H 1.09006 * 109.58640 * 305.20161 * 4 2 1 34 34 H 1.09000 * 109.58969 * 65.47831 * 4 2 1 35 35 H 1.08001 * 120.04323 * 0.03387 * 9 8 6 36 36 H 1.08001 * 120.28738 * 180.27882 * 10 9 8 37 37 H 1.07998 * 120.24852 * 179.70770 * 11 10 9 38 38 H 1.09003 * 109.47112 * 274.95158 * 15 14 12 39 39 H 1.09001 * 109.47278 * 34.95028 * 15 14 12 40 40 H 1.08998 * 109.47725 * 154.95304 * 15 14 12 41 41 H 1.08997 * 109.53462 * 186.67859 * 16 5 4 42 42 H 1.08998 * 109.67400 * 66.37010 * 16 5 4 43 43 H 1.09001 * 109.49787 * 294.70065 * 17 16 5 44 44 H 1.09000 * 109.52245 * 174.61291 * 17 16 5 45 45 H 1.08998 * 109.47193 * 294.99654 * 20 18 2 46 46 H 1.09003 * 109.47100 * 54.99800 * 20 18 2 47 47 H 0.96998 * 120.00152 * 0.02562 * 21 20 18 48 48 H 0.97005 * 120.00216 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8937 1.0275 0.0000 4 6 2.0413 -0.7233 -1.2498 5 7 3.5047 -0.8286 -1.1734 6 6 4.2789 -0.3840 -2.1832 7 8 3.7668 0.0240 -3.2072 8 6 5.7512 -0.3927 -2.0452 9 6 6.3797 0.6524 -1.4366 10 6 7.7771 0.6452 -1.2997 11 6 8.4913 -0.4054 -1.7882 12 6 7.8151 -1.4729 -2.4193 13 8 8.4469 -2.4186 -2.8596 14 7 6.4736 -1.4477 -2.5355 15 6 5.7808 -2.5596 -3.1911 16 6 4.1053 -1.4266 0.0301 17 6 3.5709 -0.6953 1.2656 18 6 2.0409 -0.7234 1.2481 19 1 1.6968 -1.7576 1.2346 20 6 1.5039 -0.0240 2.4983 21 7 1.8933 -0.7843 3.6885 22 6 1.5227 -0.3467 4.9321 23 1 0.9437 0.5592 5.0355 24 6 1.8922 -1.0668 6.0598 25 7 2.5991 -2.1699 5.9339 26 14 1.3873 -0.4695 7.7562 27 1 -0.0941 -0.4085 7.8389 28 1 1.9029 -1.4080 8.7851 29 1 1.9524 0.8832 7.9933 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5148 0.8895 32 1 -0.3635 0.5128 -0.8905 33 1 1.6052 -1.7212 -1.2987 34 1 1.7615 -0.1585 -2.1391 35 1 5.8033 1.4830 -1.0565 36 1 8.2811 1.4680 -0.8145 37 1 9.5670 -0.4226 -1.6944 38 1 5.7738 -2.3983 -4.2691 39 1 6.2976 -3.4927 -2.9667 40 1 4.7555 -2.6152 -2.8255 41 1 5.1896 -1.3245 -0.0144 42 1 3.8397 -2.4822 0.0870 43 1 3.9160 0.3386 1.2540 44 1 3.9335 -1.1898 2.1668 45 1 1.9185 0.9822 2.5582 46 1 0.4167 0.0337 2.4437 47 1 2.4142 -1.5972 3.5958 48 1 2.8576 -2.6729 6.7220 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001185128562.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:31:44 Heat of formation + Delta-G solvation = -43.796664 kcal Electronic energy + Delta-G solvation = -29475.974315 eV Core-core repulsion = 25530.765988 eV Total energy + Delta-G solvation = -3945.208327 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.76029 -41.20110 -39.39452 -37.93210 -36.61413 -35.70545 -35.04609 -33.46819 -32.06362 -31.48309 -28.77154 -28.44807 -27.98313 -25.98316 -25.14809 -23.88283 -23.70486 -22.74788 -21.48611 -20.54951 -19.18490 -18.91756 -18.52322 -18.12127 -17.69334 -16.96942 -16.74984 -16.45059 -16.17009 -15.73528 -15.65068 -15.52952 -15.29025 -15.18009 -14.53674 -14.40013 -14.31244 -14.04229 -13.93748 -13.79796 -13.53769 -13.15271 -13.10411 -13.05617 -12.92542 -12.85230 -12.70946 -12.62435 -12.22097 -11.97121 -11.86562 -11.75890 -11.62718 -11.41671 -11.19676 -11.16958 -10.99339 -10.84665 -9.87904 -9.18497 -8.92628 -7.91977 -5.18934 -0.44532 0.65184 0.83062 1.45548 1.49793 1.51306 1.57521 1.82349 2.47566 2.58707 2.88542 3.41948 3.48710 3.67853 3.71417 3.81145 3.88650 3.94535 4.02464 4.14574 4.19229 4.21306 4.28495 4.32966 4.35977 4.51620 4.52106 4.62194 4.67542 4.72821 4.77052 4.80557 4.86987 4.95743 5.00055 5.12220 5.14833 5.16858 5.18185 5.26103 5.36100 5.37088 5.47675 5.53321 5.60869 5.82441 6.01881 6.31015 6.65786 6.79842 7.38138 8.15804 8.38421 9.31021 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.013707 B = 0.002981 C = 0.002635 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2042.203773 B = 9388.998708 C =10622.553160 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.086 4.086 3 H 0.075 0.925 4 C 0.119 3.881 5 N -0.586 5.586 6 C 0.566 3.434 7 O -0.548 6.548 8 C 0.110 3.890 9 C -0.174 4.174 10 C 0.000 4.000 11 C -0.239 4.239 12 C 0.502 3.498 13 O -0.594 6.594 14 N -0.486 5.486 15 C 0.057 3.943 16 C 0.112 3.888 17 C -0.117 4.117 18 C -0.080 4.080 19 H 0.068 0.932 20 C 0.156 3.844 21 N -0.742 5.742 22 C -0.244 4.244 23 H 0.072 0.928 24 C -0.071 4.071 25 N -0.967 5.967 26 Si 0.967 3.033 27 H -0.280 1.280 28 H -0.297 1.297 29 H -0.279 1.279 30 H 0.059 0.941 31 H 0.056 0.944 32 H 0.071 0.929 33 H 0.087 0.913 34 H 0.095 0.905 35 H 0.170 0.830 36 H 0.183 0.817 37 H 0.166 0.834 38 H 0.082 0.918 39 H 0.095 0.905 40 H 0.090 0.910 41 H 0.088 0.912 42 H 0.086 0.914 43 H 0.069 0.931 44 H 0.066 0.934 45 H 0.014 0.986 46 H 0.026 0.974 47 H 0.375 0.625 48 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.567 5.515 -17.970 19.344 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.106 4.106 3 H 0.093 0.907 4 C -0.003 4.003 5 N -0.317 5.317 6 C 0.352 3.648 7 O -0.425 6.425 8 C 0.000 4.000 9 C -0.198 4.198 10 C -0.021 4.021 11 C -0.260 4.260 12 C 0.306 3.694 13 O -0.480 6.480 14 N -0.199 5.199 15 C -0.084 4.084 16 C -0.010 4.010 17 C -0.156 4.156 18 C -0.099 4.099 19 H 0.087 0.913 20 C 0.030 3.970 21 N -0.385 5.385 22 C -0.376 4.376 23 H 0.090 0.910 24 C -0.264 4.264 25 N -0.618 5.618 26 Si 0.796 3.204 27 H -0.206 1.206 28 H -0.223 1.223 29 H -0.205 1.205 30 H 0.078 0.922 31 H 0.075 0.925 32 H 0.090 0.910 33 H 0.105 0.895 34 H 0.113 0.887 35 H 0.187 0.813 36 H 0.201 0.799 37 H 0.184 0.816 38 H 0.101 0.899 39 H 0.114 0.886 40 H 0.108 0.892 41 H 0.106 0.894 42 H 0.104 0.896 43 H 0.088 0.912 44 H 0.084 0.916 45 H 0.032 0.968 46 H 0.044 0.956 47 H 0.208 0.792 48 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 4.542 5.195 -18.702 19.934 hybrid contribution -0.043 -0.287 1.215 1.250 sum 4.499 4.908 -17.486 18.711 Atomic orbital electron populations 1.21805 0.93367 1.02624 1.02493 1.21360 0.96879 0.99575 0.92759 0.90693 1.21876 0.77128 1.02264 0.98993 1.48273 1.07660 1.58032 1.17697 1.17994 0.85418 0.77969 0.83454 1.90852 1.74390 1.48174 1.29104 1.20319 0.91535 0.90322 0.97828 1.21181 0.96171 0.98848 1.03597 1.21781 0.92301 0.97229 0.90785 1.22494 1.02701 0.95013 1.05805 1.17797 0.80296 0.89210 0.82112 1.90915 1.64874 1.38222 1.53960 1.45512 1.08205 1.18343 1.47793 1.22256 0.97727 0.89438 0.98994 1.21942 0.98355 0.97875 0.82853 1.21794 0.95460 1.01366 0.96938 1.21244 0.95065 0.99793 0.93789 0.91331 1.20897 0.96805 0.93708 0.85589 1.42553 1.65216 1.29170 1.01566 1.19562 1.26763 1.05963 0.85269 0.91002 1.25452 1.01709 0.98013 1.01204 1.69782 1.44277 1.18567 1.29126 0.85310 0.77834 0.77160 0.80056 1.20641 1.22310 1.20520 0.92154 0.92494 0.90995 0.89487 0.88668 0.81283 0.79945 0.81636 0.89933 0.88590 0.89167 0.89354 0.89570 0.91212 0.91550 0.96765 0.95623 0.79240 0.94102 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.73 8.81 71.98 0.63 -2.09 16 2 C -0.09 -1.73 2.42 -10.72 -0.03 -1.75 16 3 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 4 C 0.12 2.14 5.69 86.36 0.49 2.63 16 5 N -0.59 -11.10 2.98 -821.58 -2.45 -13.55 16 6 C 0.57 12.04 5.23 86.79 0.45 12.50 16 7 O -0.55 -14.78 16.54 -3.85 -0.06 -14.85 16 8 C 0.11 2.14 4.44 40.45 0.18 2.32 16 9 C -0.17 -2.63 9.52 22.35 0.21 -2.42 16 10 C 0.00 0.00 10.08 22.30 0.22 0.23 16 11 C -0.24 -4.28 10.00 22.51 0.23 -4.06 16 12 C 0.50 12.52 7.43 85.00 0.63 13.15 16 13 O -0.59 -19.19 16.72 -5.19 -0.09 -19.28 16 14 N -0.49 -10.56 3.02 -660.61 -1.99 -12.55 16 15 C 0.06 1.09 9.98 127.77 1.28 2.36 16 16 C 0.11 2.14 6.36 86.31 0.55 2.69 16 17 C -0.12 -2.87 5.25 30.67 0.16 -2.71 16 18 C -0.08 -2.09 1.73 -10.77 -0.02 -2.10 16 19 H 0.07 1.89 8.14 -2.38 -0.02 1.87 16 20 C 0.16 5.54 5.41 86.38 0.47 6.01 16 21 N -0.74 -34.93 5.32 -343.46 -1.83 -36.76 16 22 C -0.24 -13.02 9.99 84.03 0.84 -12.18 16 23 H 0.07 3.71 7.83 -2.91 -0.02 3.69 16 24 C -0.07 -3.95 5.50 84.86 0.47 -3.48 16 25 N -0.97 -56.91 13.06 21.65 0.28 -56.62 16 26 Si 0.97 44.72 29.55 68.60 2.03 46.75 16 27 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 28 H -0.30 -13.90 7.11 99.48 0.71 -13.19 16 29 H -0.28 -12.44 7.11 99.48 0.71 -11.74 16 30 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 31 H 0.06 1.23 6.30 -2.39 -0.02 1.22 16 32 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 33 H 0.09 1.40 8.14 -2.38 -0.02 1.38 16 34 H 0.09 1.78 7.03 -2.39 -0.02 1.76 16 35 H 0.17 1.93 8.06 -2.91 -0.02 1.91 16 36 H 0.18 0.90 8.06 -2.91 -0.02 0.88 16 37 H 0.17 2.47 8.06 -2.91 -0.02 2.45 16 38 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 39 H 0.10 1.86 7.55 -2.39 -0.02 1.84 16 40 H 0.09 1.52 6.69 -2.39 -0.02 1.50 16 41 H 0.09 1.60 6.21 -2.39 -0.01 1.58 16 42 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 43 H 0.07 1.66 8.14 -2.39 -0.02 1.65 16 44 H 0.07 2.02 7.15 -2.39 -0.02 2.00 16 45 H 0.01 0.52 8.14 -2.39 -0.02 0.50 16 46 H 0.03 0.93 6.14 -2.39 -0.01 0.91 16 47 H 0.38 18.64 6.84 -92.71 -0.63 18.01 16 48 H 0.25 14.41 8.31 -92.70 -0.77 13.64 16 Total: -1.00 -72.00 383.87 2.99 -69.01 By element: Atomic # 1 Polarization: 26.44 SS G_CDS: 0.34 Total: 26.77 kcal Atomic # 6 Polarization: 4.33 SS G_CDS: 6.77 Total: 11.09 kcal Atomic # 7 Polarization: -113.50 SS G_CDS: -5.99 Total: -119.49 kcal Atomic # 8 Polarization: -33.98 SS G_CDS: -0.15 Total: -34.13 kcal Atomic # 14 Polarization: 44.72 SS G_CDS: 2.03 Total: 46.75 kcal Total: -72.00 2.99 -69.01 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001185128562.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.210 kcal (2) G-P(sol) polarization free energy of solvation -71.998 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.992 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.006 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.797 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds