Wall clock time and date at job start Tue Mar 31 2020 17:31:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09000 * 109.49621 * 2 1 4 4 C 1.53627 * 109.43164 * 120.22363 * 2 1 3 5 5 N 1.46931 * 108.54041 * 174.72244 * 4 2 1 6 6 C 1.34777 * 120.62464 * 126.36666 * 5 4 2 7 7 O 1.21539 * 120.00557 * 4.60686 * 6 5 4 8 8 C 1.47891 * 119.99438 * 184.87861 * 6 5 4 9 9 C 1.36291 * 119.75169 * 84.87222 * 8 6 5 10 10 C 1.40410 * 119.90061 * 179.79543 * 9 8 6 11 11 C 1.36109 * 119.41992 * 0.47309 * 10 9 8 12 12 C 1.41233 * 119.50594 * 359.75480 * 11 10 9 13 13 O 1.21967 * 119.95964 * 179.97438 * 12 11 10 14 14 N 1.34678 * 120.09138 * 0.02562 * 12 11 10 15 15 C 1.46494 * 119.70574 * 180.02562 * 14 12 11 16 16 C 1.46918 * 118.73755 * 306.09280 * 5 4 2 17 17 C 1.53186 * 108.77679 * 53.86275 * 16 5 4 18 18 C 1.53035 * 109.31492 * 305.36005 * 17 16 5 19 19 H 1.09000 * 109.46001 * 301.35116 * 18 17 16 20 20 C 1.52999 * 109.46529 * 181.38283 * 18 17 16 21 21 N 1.46507 * 109.46655 * 65.00085 * 20 18 17 22 22 C 1.36935 * 119.99817 * 179.97438 * 21 20 18 23 23 H 1.07998 * 120.00189 * 0.02562 * 22 21 20 24 24 C 1.38812 * 119.99803 * 180.02562 * 22 21 20 25 25 N 1.31623 * 120.00080 * 0.02562 * 24 22 21 26 26 Si 1.86802 * 119.99954 * 179.97438 * 24 22 21 27 27 H 1.48506 * 109.47083 * 0.02562 * 26 24 22 28 28 H 1.48502 * 109.47066 * 119.99764 * 26 24 22 29 29 H 1.48500 * 109.47330 * 239.99907 * 26 24 22 30 30 H 1.08999 * 109.46836 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.46583 * 300.06574 * 1 2 3 32 32 H 1.08990 * 109.47214 * 60.06493 * 1 2 3 33 33 H 1.08999 * 109.74123 * 54.98447 * 4 2 1 34 34 H 1.09003 * 109.66493 * 294.41271 * 4 2 1 35 35 H 1.08002 * 120.05596 * 0.02562 * 9 8 6 36 36 H 1.08004 * 120.29201 * 180.22914 * 10 9 8 37 37 H 1.07999 * 120.24890 * 179.73510 * 11 10 9 38 38 H 1.09004 * 109.47265 * 274.87802 * 15 14 12 39 39 H 1.09001 * 109.47673 * 34.87688 * 15 14 12 40 40 H 1.09005 * 109.47502 * 154.87635 * 15 14 12 41 41 H 1.09005 * 109.58246 * 173.64894 * 16 5 4 42 42 H 1.09000 * 109.59058 * 294.07056 * 16 5 4 43 43 H 1.09006 * 109.50184 * 65.31760 * 17 16 5 44 44 H 1.09000 * 109.50001 * 185.37919 * 17 16 5 45 45 H 1.08996 * 109.47594 * 185.00175 * 20 18 17 46 46 H 1.09000 * 109.47396 * 305.00837 * 20 18 17 47 47 H 0.97001 * 119.99729 * 0.02562 * 21 20 18 48 48 H 0.97005 * 119.99961 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0411 -0.7293 1.2518 5 7 3.5047 -0.8295 1.1693 6 6 4.2812 -0.3870 2.1781 7 8 3.7715 0.0232 3.2024 8 6 5.7532 -0.3949 2.0363 9 6 6.3795 0.6500 1.4253 10 6 7.7773 0.6477 1.2928 11 6 8.4924 -0.4076 1.7699 12 6 7.8176 -1.4796 2.3945 13 8 8.4501 -2.4296 2.8246 14 7 6.4764 -1.4548 2.5150 15 6 5.7852 -2.5710 3.1648 16 6 4.1052 -1.4267 -0.0312 17 6 3.5708 -0.6947 -1.2662 18 6 2.0408 -0.7228 -1.2486 19 1 1.6967 -1.7570 -1.2357 20 6 1.5036 -0.0226 -2.4984 21 7 1.8917 -0.7831 -3.6889 22 6 1.5199 -0.3455 -4.9321 23 1 0.9410 0.5604 -5.0349 24 6 1.8871 -1.0663 -6.0601 25 7 2.5922 -2.1707 -5.9348 26 14 1.3794 -0.4698 -7.7560 27 1 0.5980 0.7863 -7.6254 28 1 2.5919 -0.2150 -8.5746 29 1 0.5452 -1.5060 -8.4160 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3632 0.5149 0.8894 32 1 -0.3633 0.5128 -0.8905 33 1 1.6085 -1.7286 1.2981 34 1 1.7631 -0.1668 2.1432 35 1 5.8019 1.4804 1.0469 36 1 8.2805 1.4742 0.8130 37 1 9.5677 -0.4252 1.6714 38 1 5.6004 -3.3587 2.4344 39 1 6.4049 -2.9620 3.9718 40 1 4.8357 -2.2230 3.5719 41 1 5.1896 -1.3246 0.0134 42 1 3.8376 -2.4818 -0.0874 43 1 3.9159 0.3392 -1.2541 44 1 3.9338 -1.1888 -2.1674 45 1 0.4167 0.0362 -2.4431 46 1 1.9194 0.9832 -2.5583 47 1 2.4113 -1.5969 -3.5965 48 1 2.8491 -2.6742 -6.7231 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001185128563.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:31:49 Heat of formation + Delta-G solvation = -23.371143 kcal Electronic energy + Delta-G solvation = -29481.602077 eV Core-core repulsion = 25537.279467 eV Total energy + Delta-G solvation = -3944.322610 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.91151 -40.26685 -38.33681 -36.99500 -35.19904 -34.94274 -33.71098 -32.12858 -30.73013 -30.37042 -27.98479 -27.14472 -27.04262 -24.87171 -23.68688 -22.98338 -22.66841 -21.52896 -20.47010 -19.54920 -18.11953 -17.69260 -17.42487 -17.08352 -16.77291 -16.06780 -15.59510 -15.28392 -14.95942 -14.89578 -14.62311 -14.26878 -14.00915 -13.67589 -13.61224 -13.41633 -13.17808 -13.01528 -12.81974 -12.63426 -12.59862 -12.36946 -12.20376 -12.01264 -11.90165 -11.69920 -11.08805 -11.00630 -10.89277 -10.76764 -10.50953 -10.43915 -10.34740 -10.29970 -10.07867 -9.99679 -9.70932 -8.96411 -8.88690 -8.34259 -6.96378 -5.82204 -3.10417 0.31778 1.45629 1.70465 2.32237 2.67129 3.27799 3.39424 3.45552 3.47463 3.74591 4.25037 4.52746 4.54579 4.62307 4.74878 4.78292 4.82185 4.87190 4.92942 4.94670 5.03398 5.13190 5.25740 5.28247 5.34983 5.51024 5.52074 5.55044 5.62633 5.66128 5.71383 5.76234 5.83433 5.89018 5.94433 6.03207 6.07907 6.16348 6.19761 6.27392 6.37736 6.50240 6.65365 6.74094 6.82911 6.92471 7.55190 7.65839 7.68508 8.37011 9.48478 10.05943 10.40170 11.40710 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.013676 B = 0.002988 C = 0.002640 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2046.883988 B = 9370.068173 C =10604.702183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.097 4.097 3 H 0.075 0.925 4 C 0.116 3.884 5 N -0.590 5.590 6 C 0.559 3.441 7 O -0.522 6.522 8 C 0.130 3.870 9 C -0.185 4.185 10 C -0.018 4.018 11 C -0.226 4.226 12 C 0.516 3.484 13 O -0.547 6.547 14 N -0.485 5.485 15 C 0.055 3.945 16 C 0.102 3.898 17 C -0.124 4.124 18 C -0.090 4.090 19 H 0.073 0.927 20 C 0.157 3.843 21 N -0.732 5.732 22 C -0.239 4.239 23 H 0.070 0.930 24 C -0.013 4.013 25 N -0.933 5.933 26 Si 0.905 3.095 27 H -0.281 1.281 28 H -0.292 1.292 29 H -0.292 1.292 30 H 0.057 0.943 31 H 0.052 0.948 32 H 0.070 0.930 33 H 0.075 0.925 34 H 0.093 0.907 35 H 0.151 0.849 36 H 0.144 0.856 37 H 0.154 0.846 38 H 0.081 0.919 39 H 0.097 0.903 40 H 0.086 0.914 41 H 0.080 0.920 42 H 0.078 0.922 43 H 0.067 0.933 44 H 0.092 0.908 45 H 0.025 0.975 46 H 0.017 0.983 47 H 0.383 0.617 48 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.836 3.995 17.845 18.915 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.116 4.116 3 H 0.094 0.906 4 C -0.005 4.005 5 N -0.321 5.321 6 C 0.343 3.657 7 O -0.397 6.397 8 C 0.020 3.980 9 C -0.209 4.209 10 C -0.040 4.040 11 C -0.248 4.248 12 C 0.318 3.682 13 O -0.429 6.429 14 N -0.199 5.199 15 C -0.086 4.086 16 C -0.020 4.020 17 C -0.162 4.162 18 C -0.109 4.109 19 H 0.092 0.908 20 C 0.029 3.971 21 N -0.376 5.376 22 C -0.370 4.370 23 H 0.088 0.912 24 C -0.209 4.209 25 N -0.582 5.582 26 Si 0.737 3.263 27 H -0.206 1.206 28 H -0.219 1.219 29 H -0.219 1.219 30 H 0.076 0.924 31 H 0.071 0.929 32 H 0.089 0.911 33 H 0.093 0.907 34 H 0.112 0.888 35 H 0.169 0.831 36 H 0.162 0.838 37 H 0.171 0.829 38 H 0.099 0.901 39 H 0.116 0.884 40 H 0.104 0.896 41 H 0.099 0.901 42 H 0.096 0.904 43 H 0.086 0.914 44 H 0.111 0.889 45 H 0.043 0.957 46 H 0.035 0.965 47 H 0.217 0.783 48 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 4.848 3.643 18.561 19.526 hybrid contribution -0.054 0.075 -1.165 1.169 sum 4.793 3.718 17.396 18.423 Atomic orbital electron populations 1.21834 0.94097 1.02342 1.02246 1.21553 0.96355 0.99912 0.93818 0.90630 1.21967 0.77323 1.01568 0.99680 1.48211 1.07482 1.58537 1.17905 1.17977 0.85131 0.78660 0.83891 1.90864 1.73926 1.46902 1.28056 1.20271 0.91949 0.89555 0.96240 1.20764 0.95375 0.99412 1.05377 1.21413 0.92938 0.97205 0.92403 1.22342 1.01908 0.94980 1.05583 1.17319 0.79977 0.88967 0.81987 1.90949 1.63994 1.36370 1.51614 1.45509 1.08365 1.17588 1.48407 1.22243 0.98241 0.88584 0.99575 1.22008 0.98002 0.97877 0.84161 1.21928 0.96126 1.01240 0.96930 1.21365 0.94548 1.00345 0.94646 0.90822 1.20747 0.96727 0.94052 0.85536 1.42380 1.65480 1.28920 1.00864 1.19259 1.27700 1.06214 0.83802 0.91221 1.24720 1.00888 0.97494 0.97818 1.69658 1.42835 1.17245 1.28488 0.86144 0.77689 0.77773 0.84741 1.20583 1.21871 1.21878 0.92407 0.92888 0.91125 0.90720 0.88842 0.83148 0.83803 0.82873 0.90089 0.88445 0.89560 0.90148 0.90419 0.91439 0.88938 0.95739 0.96513 0.78338 0.93566 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.53 8.82 37.16 0.33 -1.21 16 2 C -0.10 -1.07 2.43 -90.27 -0.22 -1.29 16 3 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 4 C 0.12 1.18 5.73 -3.48 -0.02 1.16 16 5 N -0.59 -6.18 2.97 -173.60 -0.51 -6.70 16 6 C 0.56 6.43 5.37 -12.31 -0.07 6.36 16 7 O -0.52 -7.40 16.28 5.33 0.09 -7.31 16 8 C 0.13 1.38 4.42 -82.33 -0.36 1.02 16 9 C -0.19 -1.66 9.51 -39.47 -0.38 -2.04 16 10 C -0.02 -0.14 10.08 -39.53 -0.40 -0.54 16 11 C -0.23 -2.22 10.00 -39.21 -0.39 -2.61 16 12 C 0.52 6.51 7.43 -15.17 -0.11 6.40 16 13 O -0.55 -8.64 16.72 4.95 0.08 -8.55 16 14 N -0.49 -5.43 3.02 -122.80 -0.37 -5.80 16 15 C 0.05 0.53 9.98 59.84 0.60 1.12 16 16 C 0.10 1.06 6.35 -3.72 -0.02 1.04 16 17 C -0.12 -1.59 5.25 -26.62 -0.14 -1.73 16 18 C -0.09 -1.23 1.73 -90.58 -0.16 -1.38 16 19 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 20 C 0.16 2.83 5.41 -4.04 -0.02 2.81 16 21 N -0.73 -17.20 5.32 -59.91 -0.32 -17.52 16 22 C -0.24 -6.40 9.99 -15.06 -0.15 -6.55 16 23 H 0.07 1.83 7.83 -52.49 -0.41 1.42 16 24 C -0.01 -0.37 5.50 -17.43 -0.10 -0.47 16 25 N -0.93 -27.20 13.06 55.49 0.72 -26.47 16 26 Si 0.91 21.80 29.55 -169.99 -5.02 16.77 16 27 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 28 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 29 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 30 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.07 0.82 6.29 -51.93 -0.33 0.49 16 33 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 34 H 0.09 0.99 7.03 -51.93 -0.37 0.62 16 35 H 0.15 1.14 8.06 -52.49 -0.42 0.72 16 36 H 0.14 0.70 8.06 -52.48 -0.42 0.27 16 37 H 0.15 1.26 8.06 -52.49 -0.42 0.84 16 38 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 39 H 0.10 0.94 7.55 -51.93 -0.39 0.55 16 40 H 0.09 0.81 6.51 -51.93 -0.34 0.47 16 41 H 0.08 0.80 6.18 -51.93 -0.32 0.48 16 42 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 43 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 44 H 0.09 1.41 7.15 -51.93 -0.37 1.04 16 45 H 0.02 0.45 6.14 -51.93 -0.32 0.13 16 46 H 0.02 0.32 8.14 -51.93 -0.42 -0.11 16 47 H 0.38 9.39 6.85 -40.82 -0.28 9.11 16 48 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 LS Contribution 383.53 15.07 5.78 5.78 Total: -1.00 -33.18 383.53 -8.50 -41.68 By element: Atomic # 1 Polarization: 13.35 SS G_CDS: -7.33 Total: 6.02 kcal Atomic # 6 Polarization: 3.72 SS G_CDS: -1.61 Total: 2.10 kcal Atomic # 7 Polarization: -56.01 SS G_CDS: -0.48 Total: -56.49 kcal Atomic # 8 Polarization: -16.04 SS G_CDS: 0.17 Total: -15.87 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.77 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -33.18 -8.50 -41.68 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001185128563.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.310 kcal (2) G-P(sol) polarization free energy of solvation -33.185 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.874 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.497 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.681 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.371 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds