Wall clock time and date at job start Tue Mar 31 2020 17:31:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09000 * 109.49621 * 2 1 4 4 C 1.53627 * 109.43164 * 120.22363 * 2 1 3 5 5 N 1.46931 * 108.54041 * 174.72244 * 4 2 1 6 6 C 1.34777 * 120.62464 * 126.36666 * 5 4 2 7 7 O 1.21539 * 120.00557 * 4.60686 * 6 5 4 8 8 C 1.47891 * 119.99438 * 184.87861 * 6 5 4 9 9 C 1.36291 * 119.75169 * 84.87222 * 8 6 5 10 10 C 1.40410 * 119.90061 * 179.79543 * 9 8 6 11 11 C 1.36109 * 119.41992 * 0.47309 * 10 9 8 12 12 C 1.41233 * 119.50594 * 359.75480 * 11 10 9 13 13 O 1.21967 * 119.95964 * 179.97438 * 12 11 10 14 14 N 1.34678 * 120.09138 * 0.02562 * 12 11 10 15 15 C 1.46494 * 119.70574 * 180.02562 * 14 12 11 16 16 C 1.46918 * 118.73755 * 306.09280 * 5 4 2 17 17 C 1.53186 * 108.77679 * 53.86275 * 16 5 4 18 18 C 1.53035 * 109.31492 * 305.36005 * 17 16 5 19 19 H 1.09000 * 109.46001 * 301.35116 * 18 17 16 20 20 C 1.52999 * 109.46529 * 181.38283 * 18 17 16 21 21 N 1.46507 * 109.46655 * 65.00085 * 20 18 17 22 22 C 1.36935 * 119.99817 * 179.97438 * 21 20 18 23 23 H 1.07998 * 120.00189 * 0.02562 * 22 21 20 24 24 C 1.38812 * 119.99803 * 180.02562 * 22 21 20 25 25 N 1.31623 * 120.00080 * 0.02562 * 24 22 21 26 26 Si 1.86802 * 119.99954 * 179.97438 * 24 22 21 27 27 H 1.48506 * 109.47083 * 0.02562 * 26 24 22 28 28 H 1.48502 * 109.47066 * 119.99764 * 26 24 22 29 29 H 1.48500 * 109.47330 * 239.99907 * 26 24 22 30 30 H 1.08999 * 109.46836 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.46583 * 300.06574 * 1 2 3 32 32 H 1.08990 * 109.47214 * 60.06493 * 1 2 3 33 33 H 1.08999 * 109.74123 * 54.98447 * 4 2 1 34 34 H 1.09003 * 109.66493 * 294.41271 * 4 2 1 35 35 H 1.08002 * 120.05596 * 0.02562 * 9 8 6 36 36 H 1.08004 * 120.29201 * 180.22914 * 10 9 8 37 37 H 1.07999 * 120.24890 * 179.73510 * 11 10 9 38 38 H 1.09004 * 109.47265 * 274.87802 * 15 14 12 39 39 H 1.09001 * 109.47673 * 34.87688 * 15 14 12 40 40 H 1.09005 * 109.47502 * 154.87635 * 15 14 12 41 41 H 1.09005 * 109.58246 * 173.64894 * 16 5 4 42 42 H 1.09000 * 109.59058 * 294.07056 * 16 5 4 43 43 H 1.09006 * 109.50184 * 65.31760 * 17 16 5 44 44 H 1.09000 * 109.50001 * 185.37919 * 17 16 5 45 45 H 1.08996 * 109.47594 * 185.00175 * 20 18 17 46 46 H 1.09000 * 109.47396 * 305.00837 * 20 18 17 47 47 H 0.97001 * 119.99729 * 0.02562 * 21 20 18 48 48 H 0.97005 * 119.99961 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0411 -0.7293 1.2518 5 7 3.5047 -0.8295 1.1693 6 6 4.2812 -0.3870 2.1781 7 8 3.7715 0.0232 3.2024 8 6 5.7532 -0.3949 2.0363 9 6 6.3795 0.6500 1.4253 10 6 7.7773 0.6477 1.2928 11 6 8.4924 -0.4076 1.7699 12 6 7.8176 -1.4796 2.3945 13 8 8.4501 -2.4296 2.8246 14 7 6.4764 -1.4548 2.5150 15 6 5.7852 -2.5710 3.1648 16 6 4.1052 -1.4267 -0.0312 17 6 3.5708 -0.6947 -1.2662 18 6 2.0408 -0.7228 -1.2486 19 1 1.6967 -1.7570 -1.2357 20 6 1.5036 -0.0226 -2.4984 21 7 1.8917 -0.7831 -3.6889 22 6 1.5199 -0.3455 -4.9321 23 1 0.9410 0.5604 -5.0349 24 6 1.8871 -1.0663 -6.0601 25 7 2.5922 -2.1707 -5.9348 26 14 1.3794 -0.4698 -7.7560 27 1 0.5980 0.7863 -7.6254 28 1 2.5919 -0.2150 -8.5746 29 1 0.5452 -1.5060 -8.4160 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3632 0.5149 0.8894 32 1 -0.3633 0.5128 -0.8905 33 1 1.6085 -1.7286 1.2981 34 1 1.7631 -0.1668 2.1432 35 1 5.8019 1.4804 1.0469 36 1 8.2805 1.4742 0.8130 37 1 9.5677 -0.4252 1.6714 38 1 5.6004 -3.3587 2.4344 39 1 6.4049 -2.9620 3.9718 40 1 4.8357 -2.2230 3.5719 41 1 5.1896 -1.3246 0.0134 42 1 3.8376 -2.4818 -0.0874 43 1 3.9159 0.3392 -1.2541 44 1 3.9338 -1.1888 -2.1674 45 1 0.4167 0.0362 -2.4431 46 1 1.9194 0.9832 -2.5583 47 1 2.4113 -1.5969 -3.5965 48 1 2.8491 -2.6742 -6.7231 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001185128563.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:31:48 Heat of formation + Delta-G solvation = -44.150283 kcal Electronic energy + Delta-G solvation = -29482.503128 eV Core-core repulsion = 25537.279467 eV Total energy + Delta-G solvation = -3945.223661 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -42.76129 -41.20227 -39.39237 -37.92952 -36.62418 -35.69806 -35.05126 -33.45645 -32.06163 -31.48249 -28.76402 -28.44233 -27.97971 -25.98529 -25.15109 -23.87986 -23.70495 -22.75351 -21.47686 -20.55417 -19.18509 -18.90441 -18.52113 -18.15971 -17.66707 -16.96366 -16.75558 -16.45012 -16.17010 -15.73543 -15.64903 -15.52304 -15.29217 -15.18440 -14.57086 -14.38065 -14.30903 -14.05492 -13.94623 -13.76564 -13.53318 -13.15021 -13.10044 -13.05729 -12.92545 -12.86289 -12.75018 -12.63142 -12.13159 -11.96742 -11.87366 -11.75520 -11.62545 -11.41844 -11.18920 -11.15665 -11.00591 -10.86543 -9.87188 -9.18391 -8.92840 -7.92571 -5.19370 -0.44201 0.65238 0.82930 1.46667 1.49040 1.49883 1.59134 1.82917 2.47512 2.58240 2.89236 3.41785 3.48995 3.68069 3.71129 3.81104 3.89164 3.94747 4.03326 4.15974 4.18847 4.21456 4.28498 4.33553 4.35688 4.51448 4.52781 4.62464 4.67512 4.72940 4.77038 4.80673 4.87139 4.95842 5.00162 5.12215 5.14914 5.17099 5.18243 5.26286 5.36208 5.37222 5.47884 5.53696 5.61032 5.82723 6.02299 6.30811 6.65978 6.80064 7.37853 8.15366 8.37944 9.30883 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.013676 B = 0.002988 C = 0.002640 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2046.883988 B = 9370.068173 C =10604.702183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.086 4.086 3 H 0.075 0.925 4 C 0.119 3.881 5 N -0.584 5.584 6 C 0.567 3.433 7 O -0.549 6.549 8 C 0.110 3.890 9 C -0.174 4.174 10 C 0.000 4.000 11 C -0.239 4.239 12 C 0.502 3.498 13 O -0.594 6.594 14 N -0.486 5.486 15 C 0.054 3.946 16 C 0.112 3.888 17 C -0.117 4.117 18 C -0.080 4.080 19 H 0.068 0.932 20 C 0.156 3.844 21 N -0.742 5.742 22 C -0.240 4.240 23 H 0.072 0.928 24 C -0.072 4.072 25 N -0.967 5.967 26 Si 0.966 3.034 27 H -0.268 1.268 28 H -0.294 1.294 29 H -0.295 1.295 30 H 0.059 0.941 31 H 0.071 0.929 32 H 0.056 0.944 33 H 0.087 0.913 34 H 0.096 0.904 35 H 0.170 0.830 36 H 0.183 0.817 37 H 0.166 0.834 38 H 0.091 0.909 39 H 0.092 0.908 40 H 0.088 0.912 41 H 0.088 0.912 42 H 0.086 0.914 43 H 0.069 0.931 44 H 0.065 0.935 45 H 0.026 0.974 46 H 0.015 0.985 47 H 0.375 0.625 48 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.513 5.596 18.117 19.492 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.106 4.106 3 H 0.093 0.907 4 C -0.002 4.002 5 N -0.315 5.315 6 C 0.352 3.648 7 O -0.427 6.427 8 C 0.000 4.000 9 C -0.198 4.198 10 C -0.021 4.021 11 C -0.260 4.260 12 C 0.306 3.694 13 O -0.480 6.480 14 N -0.198 5.198 15 C -0.087 4.087 16 C -0.010 4.010 17 C -0.156 4.156 18 C -0.099 4.099 19 H 0.087 0.913 20 C 0.030 3.970 21 N -0.385 5.385 22 C -0.372 4.372 23 H 0.090 0.910 24 C -0.265 4.265 25 N -0.618 5.618 26 Si 0.796 3.204 27 H -0.192 1.192 28 H -0.222 1.222 29 H -0.223 1.223 30 H 0.078 0.922 31 H 0.090 0.910 32 H 0.075 0.925 33 H 0.106 0.894 34 H 0.114 0.886 35 H 0.187 0.813 36 H 0.200 0.800 37 H 0.183 0.817 38 H 0.109 0.891 39 H 0.110 0.890 40 H 0.107 0.893 41 H 0.106 0.894 42 H 0.104 0.896 43 H 0.088 0.912 44 H 0.084 0.916 45 H 0.044 0.956 46 H 0.033 0.967 47 H 0.208 0.792 48 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 4.479 5.291 18.845 20.079 hybrid contribution -0.017 -0.329 -1.232 1.275 sum 4.462 4.962 17.613 18.834 Atomic orbital electron populations 1.21809 0.93402 1.02619 1.02488 1.21445 0.96856 0.99535 0.92721 0.90657 1.21984 0.77038 1.02219 0.98990 1.48194 1.07654 1.57993 1.17611 1.18005 0.85404 0.77951 0.83452 1.90853 1.74526 1.48227 1.29088 1.20315 0.91529 0.90256 0.97878 1.21179 0.96176 0.98920 1.03545 1.21781 0.92302 0.97290 0.90725 1.22491 1.02719 0.94841 1.05984 1.17798 0.80283 0.89278 0.82077 1.90916 1.64873 1.38168 1.54034 1.45514 1.08213 1.17986 1.48114 1.22294 0.98027 0.88660 0.99753 1.21896 0.98341 0.97864 0.82929 1.21797 0.95461 1.01359 0.96955 1.21245 0.95061 0.99790 0.93801 0.91346 1.20903 0.96821 0.93715 0.85575 1.42573 1.65266 1.29081 1.01604 1.19627 1.26519 1.05838 0.85237 0.90970 1.25452 1.01795 0.98030 1.01198 1.69796 1.44531 1.18531 1.28945 0.85175 0.77095 0.77547 0.80569 1.19221 1.22163 1.22278 0.92156 0.90984 0.92516 0.89438 0.88610 0.81285 0.79957 0.81655 0.89096 0.88975 0.89301 0.89359 0.89627 0.91210 0.91592 0.95601 0.96735 0.79243 0.94120 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.73 8.82 71.98 0.63 -2.09 16 2 C -0.09 -1.72 2.43 -10.57 -0.03 -1.75 16 3 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 4 C 0.12 2.14 5.73 86.51 0.50 2.63 16 5 N -0.58 -11.05 2.97 -821.43 -2.44 -13.49 16 6 C 0.57 12.00 5.37 86.80 0.47 12.46 16 7 O -0.55 -14.72 16.28 -3.84 -0.06 -14.78 16 8 C 0.11 2.14 4.42 40.45 0.18 2.32 16 9 C -0.17 -2.63 9.51 22.34 0.21 -2.42 16 10 C 0.00 0.00 10.08 22.30 0.22 0.23 16 11 C -0.24 -4.29 10.00 22.51 0.23 -4.07 16 12 C 0.50 12.52 7.43 84.99 0.63 13.15 16 13 O -0.59 -19.22 16.72 -5.21 -0.09 -19.31 16 14 N -0.49 -10.53 3.02 -660.60 -1.99 -12.52 16 15 C 0.05 1.02 9.98 127.77 1.27 2.30 16 16 C 0.11 2.14 6.35 86.36 0.55 2.69 16 17 C -0.12 -2.87 5.25 30.67 0.16 -2.71 16 18 C -0.08 -2.09 1.73 -10.77 -0.02 -2.10 16 19 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 20 C 0.16 5.52 5.41 86.38 0.47 5.99 16 21 N -0.74 -34.91 5.32 -343.44 -1.83 -36.73 16 22 C -0.24 -12.82 9.99 84.03 0.84 -11.98 16 23 H 0.07 3.74 7.83 -2.91 -0.02 3.72 16 24 C -0.07 -4.01 5.50 84.86 0.47 -3.54 16 25 N -0.97 -56.96 13.06 21.65 0.28 -56.68 16 26 Si 0.97 44.77 29.55 68.60 2.03 46.80 16 27 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 28 H -0.29 -13.67 7.11 99.48 0.71 -12.96 16 29 H -0.30 -13.77 7.11 99.48 0.71 -13.06 16 30 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 31 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 32 H 0.06 1.23 6.29 -2.39 -0.02 1.21 16 33 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 34 H 0.10 1.78 7.03 -2.39 -0.02 1.76 16 35 H 0.17 1.93 8.06 -2.91 -0.02 1.91 16 36 H 0.18 0.90 8.06 -2.91 -0.02 0.88 16 37 H 0.17 2.48 8.06 -2.91 -0.02 2.45 16 38 H 0.09 1.51 8.14 -2.38 -0.02 1.49 16 39 H 0.09 1.84 7.55 -2.39 -0.02 1.82 16 40 H 0.09 1.61 6.51 -2.38 -0.02 1.60 16 41 H 0.09 1.60 6.18 -2.38 -0.01 1.58 16 42 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 43 H 0.07 1.66 8.14 -2.38 -0.02 1.64 16 44 H 0.07 2.01 7.15 -2.39 -0.02 1.99 16 45 H 0.03 0.93 6.14 -2.39 -0.01 0.92 16 46 H 0.01 0.53 8.14 -2.39 -0.02 0.51 16 47 H 0.38 18.64 6.85 -92.71 -0.63 18.00 16 48 H 0.25 14.34 8.31 -92.70 -0.77 13.57 16 Total: -1.00 -72.07 383.53 3.02 -69.05 By element: Atomic # 1 Polarization: 26.21 SS G_CDS: 0.34 Total: 26.55 kcal Atomic # 6 Polarization: 4.33 SS G_CDS: 6.78 Total: 11.11 kcal Atomic # 7 Polarization: -113.44 SS G_CDS: -5.97 Total: -119.42 kcal Atomic # 8 Polarization: -33.94 SS G_CDS: -0.15 Total: -34.09 kcal Atomic # 14 Polarization: 44.77 SS G_CDS: 2.03 Total: 46.80 kcal Total: -72.07 3.02 -69.05 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001185128563.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.900 kcal (2) G-P(sol) polarization free energy of solvation -72.073 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.174 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.050 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.150 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds