Wall clock time and date at job start Tue Mar 31 2020 17:31:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08995 * 109.52194 * 2 1 4 4 C 1.53187 * 109.49669 * 120.08509 * 2 1 3 5 5 N 1.46923 * 108.77851 * 65.31556 * 4 2 1 6 6 C 1.34777 * 120.63442 * 233.63397 * 5 4 2 7 7 O 1.21541 * 119.99621 * 354.98592 * 6 5 4 8 8 C 1.47885 * 120.00376 * 174.99189 * 6 5 4 9 9 C 1.36296 * 119.75400 * 274.99493 * 8 6 5 10 10 C 1.40405 * 119.90570 * 179.97438 * 9 8 6 11 11 C 1.36106 * 119.41615 * 359.97438 * 10 9 8 12 12 C 1.41245 * 119.51279 * 0.02562 * 11 10 9 13 13 O 1.21959 * 119.96003 * 180.02562 * 12 11 10 14 14 N 1.34678 * 120.07907 * 359.74634 * 12 11 10 15 15 C 1.46507 * 119.70032 * 180.25158 * 14 12 11 16 16 C 1.46927 * 118.74047 * 53.60633 * 5 4 2 17 17 C 1.53188 * 108.77444 * 306.39644 * 16 5 4 18 18 C 1.53040 * 109.49517 * 239.92340 * 2 1 3 19 19 H 1.09002 * 109.46027 * 181.39814 * 18 2 1 20 20 C 1.52995 * 109.46246 * 61.42263 * 18 2 1 21 21 N 1.46498 * 109.47318 * 174.97278 * 20 18 2 22 22 C 1.36939 * 120.00480 * 179.97438 * 21 20 18 23 23 H 1.08000 * 119.99512 * 0.02562 * 22 21 20 24 24 C 1.38808 * 120.00100 * 179.97438 * 22 21 20 25 25 N 1.31626 * 119.99919 * 180.02562 * 24 22 21 26 26 Si 1.86801 * 120.00129 * 0.02562 * 24 22 21 27 27 H 1.48507 * 109.47149 * 89.99887 * 26 24 22 28 28 H 1.48503 * 109.47072 * 209.99628 * 26 24 22 29 29 H 1.48490 * 109.47175 * 329.99704 * 26 24 22 30 30 H 1.09004 * 109.47083 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47214 * 300.08181 * 1 2 3 32 32 H 1.09005 * 109.47022 * 60.08104 * 1 2 3 33 33 H 1.08995 * 109.59018 * 185.10658 * 4 2 1 34 34 H 1.09000 * 109.58814 * 305.38909 * 4 2 1 35 35 H 1.08004 * 120.05033 * 359.95138 * 9 8 6 36 36 H 1.07997 * 120.29335 * 180.02562 * 10 9 8 37 37 H 1.07998 * 120.24817 * 180.02562 * 11 10 9 38 38 H 1.09000 * 109.46995 * 275.25599 * 15 14 12 39 39 H 1.09001 * 109.46659 * 35.25260 * 15 14 12 40 40 H 1.08991 * 109.46928 * 155.25127 * 15 14 12 41 41 H 1.09003 * 109.58377 * 66.17836 * 16 5 4 42 42 H 1.08999 * 109.59189 * 186.60437 * 16 5 4 43 43 H 1.08999 * 109.49867 * 294.67487 * 17 16 5 44 44 H 1.09004 * 109.50251 * 174.58270 * 17 16 5 45 45 H 1.09003 * 109.46888 * 294.96475 * 20 18 2 46 46 H 1.08995 * 109.47616 * 54.97114 * 20 18 2 47 47 H 0.97005 * 119.99794 * 359.97438 * 21 20 18 48 48 H 0.96996 * 119.99947 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0413 -0.7239 1.2495 5 7 1.6516 -2.1382 1.1695 6 6 0.9739 -2.7220 2.1777 7 8 0.7591 -2.1051 3.2027 8 6 0.4920 -4.1130 2.0370 9 6 -0.7019 -4.3567 1.4264 10 6 -1.1622 -5.6762 1.2906 11 6 -0.4067 -6.7007 1.7723 12 6 0.8267 -6.4200 2.4007 13 8 1.5105 -7.3318 2.8348 14 7 1.2512 -5.1471 2.5161 15 6 2.5345 -4.8658 3.1646 16 6 2.0140 -2.9040 -0.0309 17 6 1.5030 -2.1557 -1.2661 18 6 2.0408 -0.7230 -1.2484 19 1 3.1305 -0.7444 -1.2354 20 6 1.5604 0.0170 -2.4984 21 7 2.1469 -0.6035 -3.6889 22 6 1.8579 -0.1079 -4.9323 23 1 1.1978 0.7407 -5.0352 24 6 2.4141 -0.6955 -6.0602 25 7 2.1366 -0.2188 -7.2553 26 14 3.5563 -2.1628 -5.8820 27 1 2.7618 -3.4167 -5.9251 28 1 4.5404 -2.1620 -6.9941 29 1 4.2746 -2.0763 -4.5852 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5151 0.8893 32 1 -0.3633 0.5126 -0.8908 33 1 3.1274 -0.6464 1.2980 34 1 1.6027 -0.2717 2.1390 35 1 -1.2932 -3.5360 1.0478 36 1 -2.1071 -5.8765 0.8075 37 1 -0.7476 -7.7208 1.6747 38 1 2.3921 -4.8122 4.2439 39 1 3.2419 -5.6613 2.9304 40 1 2.9241 -3.9147 2.8018 41 1 3.0979 -3.0043 -0.0869 42 1 1.5554 -3.8919 0.0135 43 1 0.4133 -2.1355 -1.2542 44 1 1.8480 -2.6627 -2.1673 45 1 0.4734 -0.0383 -2.5581 46 1 1.8687 1.0610 -2.4436 47 1 2.7401 -1.3654 -3.5963 48 1 2.5250 -0.6296 -8.0434 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001185128564.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:31:52 Heat of formation + Delta-G solvation = -15.685750 kcal Electronic energy + Delta-G solvation = -29848.364640 eV Core-core repulsion = 25904.375294 eV Total energy + Delta-G solvation = -3943.989346 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.00493 -40.46165 -38.51884 -37.06781 -35.32508 -35.01724 -33.63877 -32.05762 -30.84568 -30.67188 -28.06005 -27.47402 -27.26135 -25.00640 -23.64574 -23.19922 -23.03722 -21.53626 -20.65824 -18.83428 -18.37760 -17.76519 -17.63907 -17.24249 -16.81934 -16.15763 -15.62123 -15.51660 -15.14058 -15.03064 -14.53229 -14.31749 -14.29588 -13.93358 -13.70046 -13.56683 -13.16029 -13.11836 -12.91565 -12.83260 -12.59603 -12.51980 -12.43828 -12.12566 -11.81944 -11.60730 -11.49214 -11.19463 -10.93669 -10.83122 -10.60928 -10.52009 -10.41075 -10.31173 -10.18669 -10.08355 -9.64367 -9.02245 -8.94852 -8.41158 -7.28683 -5.82364 -3.18120 0.24796 1.38831 1.64139 2.24537 2.59434 3.21159 3.30362 3.32081 3.39881 3.66307 4.17417 4.46850 4.50298 4.52757 4.62226 4.68350 4.74478 4.78656 4.81727 4.87568 4.95760 4.97314 5.15441 5.20621 5.25793 5.43798 5.44308 5.49016 5.51353 5.55854 5.56800 5.59940 5.69154 5.79141 5.82780 5.91196 5.97890 6.01655 6.12812 6.16600 6.18601 6.35802 6.58186 6.59842 6.71700 6.83366 7.48660 7.61615 7.93811 8.36669 9.15541 9.87716 10.07042 11.36183 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.013495 B = 0.003343 C = 0.002974 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2074.398710 B = 8373.347358 C = 9414.242532 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.098 4.098 3 H 0.088 0.912 4 C 0.116 3.884 5 N -0.589 5.589 6 C 0.559 3.441 7 O -0.517 6.517 8 C 0.129 3.871 9 C -0.185 4.185 10 C -0.018 4.018 11 C -0.226 4.226 12 C 0.516 3.484 13 O -0.547 6.547 14 N -0.486 5.486 15 C 0.059 3.941 16 C 0.101 3.899 17 C -0.129 4.129 18 C -0.094 4.094 19 H 0.072 0.928 20 C 0.163 3.837 21 N -0.756 5.756 22 C -0.244 4.244 23 H 0.090 0.910 24 C 0.005 3.995 25 N -0.934 5.934 26 Si 0.883 3.117 27 H -0.284 1.284 28 H -0.291 1.291 29 H -0.278 1.278 30 H 0.054 0.946 31 H 0.051 0.949 32 H 0.066 0.934 33 H 0.074 0.926 34 H 0.095 0.905 35 H 0.151 0.849 36 H 0.145 0.855 37 H 0.154 0.846 38 H 0.081 0.919 39 H 0.098 0.902 40 H 0.081 0.919 41 H 0.077 0.923 42 H 0.081 0.919 43 H 0.076 0.924 44 H 0.084 0.916 45 H 0.031 0.969 46 H 0.027 0.973 47 H 0.359 0.641 48 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.621 -6.984 20.974 22.400 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.117 4.117 3 H 0.106 0.894 4 C -0.006 4.006 5 N -0.321 5.321 6 C 0.344 3.656 7 O -0.392 6.392 8 C 0.019 3.981 9 C -0.209 4.209 10 C -0.040 4.040 11 C -0.248 4.248 12 C 0.317 3.683 13 O -0.429 6.429 14 N -0.199 5.199 15 C -0.083 4.083 16 C -0.022 4.022 17 C -0.167 4.167 18 C -0.113 4.113 19 H 0.091 0.909 20 C 0.036 3.964 21 N -0.401 5.401 22 C -0.374 4.374 23 H 0.107 0.893 24 C -0.191 4.191 25 N -0.582 5.582 26 Si 0.713 3.287 27 H -0.210 1.210 28 H -0.217 1.217 29 H -0.204 1.204 30 H 0.073 0.927 31 H 0.070 0.930 32 H 0.085 0.915 33 H 0.092 0.908 34 H 0.113 0.887 35 H 0.169 0.831 36 H 0.162 0.838 37 H 0.171 0.829 38 H 0.099 0.901 39 H 0.116 0.884 40 H 0.100 0.900 41 H 0.095 0.905 42 H 0.099 0.901 43 H 0.095 0.905 44 H 0.102 0.898 45 H 0.049 0.951 46 H 0.044 0.956 47 H 0.192 0.808 48 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -3.319 -7.064 21.641 23.006 hybrid contribution 0.795 -1.004 -0.233 1.301 sum -2.524 -8.068 21.409 23.017 Atomic orbital electron populations 1.21898 0.94609 1.01971 1.02030 1.21476 0.96915 0.99730 0.93613 0.89369 1.21843 1.00007 0.78947 0.99792 1.48153 1.53832 1.12275 1.17879 1.17952 0.78583 0.85189 0.83920 1.90868 1.56312 1.64142 1.27909 1.20289 0.93462 0.88114 0.96244 1.20771 0.96029 0.98768 1.05359 1.21418 0.98757 0.91367 0.92436 1.22351 0.95388 1.01620 1.05430 1.17322 0.88196 0.80764 0.81972 1.90951 1.57933 1.42348 1.51635 1.45519 1.19342 1.06562 1.48521 1.22200 0.83690 1.03328 0.99033 1.21986 1.00903 0.94953 0.84310 1.21992 1.02038 0.96013 0.96622 1.21388 1.00374 0.94526 0.95015 0.90917 1.20685 0.96359 0.94882 0.84478 1.42731 1.57274 1.37518 1.02614 1.19051 1.24157 1.12372 0.81857 0.89266 1.24674 1.00193 0.99115 0.95125 1.69699 1.48287 1.43127 0.97071 0.86576 0.81302 0.83834 0.76946 1.21033 1.21703 1.20422 0.92692 0.93028 0.91483 0.90800 0.88656 0.83145 0.83765 0.82852 0.90067 0.88381 0.90010 0.90519 0.90057 0.90550 0.89790 0.95140 0.95557 0.80761 0.93023 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.50 8.38 37.16 0.31 -1.19 16 2 C -0.10 -0.98 2.72 -90.50 -0.25 -1.22 16 3 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 4 C 0.12 1.05 5.81 -3.72 -0.02 1.03 16 5 N -0.59 -5.54 2.41 -173.88 -0.42 -5.96 16 6 C 0.56 5.95 5.23 -12.31 -0.06 5.89 16 7 O -0.52 -6.97 16.54 5.33 0.09 -6.88 16 8 C 0.13 1.28 4.42 -82.34 -0.36 0.91 16 9 C -0.19 -1.53 9.51 -39.47 -0.38 -1.91 16 10 C -0.02 -0.13 10.08 -39.53 -0.40 -0.53 16 11 C -0.23 -2.09 10.00 -39.21 -0.39 -2.48 16 12 C 0.52 6.20 7.43 -15.16 -0.11 6.09 16 13 O -0.55 -8.32 16.73 4.96 0.08 -8.24 16 14 N -0.49 -5.12 3.02 -122.80 -0.37 -5.49 16 15 C 0.06 0.53 9.98 59.85 0.60 1.13 16 16 C 0.10 0.93 6.35 -3.71 -0.02 0.91 16 17 C -0.13 -1.47 4.90 -26.61 -0.13 -1.60 16 18 C -0.09 -1.16 1.96 -90.58 -0.18 -1.34 16 19 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 20 C 0.16 2.78 5.19 -4.05 -0.02 2.75 16 21 N -0.76 -16.58 5.12 -59.91 -0.31 -16.89 16 22 C -0.24 -6.64 10.47 -15.06 -0.16 -6.80 16 23 H 0.09 2.62 8.06 -52.49 -0.42 2.19 16 24 C 0.00 0.13 5.50 -17.43 -0.10 0.04 16 25 N -0.93 -28.71 13.97 55.49 0.78 -27.94 16 26 Si 0.88 21.23 27.74 -169.99 -4.71 16.51 16 27 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 28 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 29 H -0.28 -6.20 6.52 56.52 0.37 -5.83 16 30 H 0.05 0.56 5.97 -51.93 -0.31 0.25 16 31 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.07 0.74 6.58 -51.93 -0.34 0.40 16 33 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.10 0.92 7.04 -51.93 -0.37 0.55 16 35 H 0.15 1.04 8.06 -52.48 -0.42 0.62 16 36 H 0.14 0.62 8.06 -52.49 -0.42 0.20 16 37 H 0.15 1.19 8.06 -52.49 -0.42 0.76 16 38 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.10 0.86 7.56 -51.93 -0.39 0.47 16 40 H 0.08 0.66 6.69 -51.93 -0.35 0.31 16 41 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 42 H 0.08 0.72 6.18 -51.93 -0.32 0.40 16 43 H 0.08 0.87 6.33 -51.93 -0.33 0.54 16 44 H 0.08 1.11 7.15 -51.93 -0.37 0.74 16 45 H 0.03 0.53 6.74 -51.93 -0.35 0.18 16 46 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 47 H 0.36 7.63 4.71 -40.82 -0.19 7.44 16 48 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 LS Contribution 376.68 15.07 5.68 5.68 Total: -1.00 -34.41 376.68 -8.00 -42.41 By element: Atomic # 1 Polarization: 12.26 SS G_CDS: -7.14 Total: 5.13 kcal Atomic # 6 Polarization: 3.34 SS G_CDS: -1.67 Total: 1.67 kcal Atomic # 7 Polarization: -55.96 SS G_CDS: -0.32 Total: -56.28 kcal Atomic # 8 Polarization: -15.29 SS G_CDS: 0.17 Total: -15.12 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -4.71 Total: 16.51 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -34.41 -8.00 -42.41 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001185128564.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.727 kcal (2) G-P(sol) polarization free energy of solvation -34.413 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.686 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.000 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.413 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.686 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds