Wall clock time and date at job start Tue Mar 31 2020 17:31:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08995 * 109.52194 * 2 1 4 4 C 1.53187 * 109.49669 * 120.08509 * 2 1 3 5 5 N 1.46923 * 108.77851 * 65.31556 * 4 2 1 6 6 C 1.34777 * 120.63442 * 233.63397 * 5 4 2 7 7 O 1.21541 * 119.99621 * 354.98592 * 6 5 4 8 8 C 1.47885 * 120.00376 * 174.99189 * 6 5 4 9 9 C 1.36296 * 119.75400 * 274.99493 * 8 6 5 10 10 C 1.40405 * 119.90570 * 179.97438 * 9 8 6 11 11 C 1.36106 * 119.41615 * 359.97438 * 10 9 8 12 12 C 1.41245 * 119.51279 * 0.02562 * 11 10 9 13 13 O 1.21959 * 119.96003 * 180.02562 * 12 11 10 14 14 N 1.34678 * 120.07907 * 359.74634 * 12 11 10 15 15 C 1.46507 * 119.70032 * 180.25158 * 14 12 11 16 16 C 1.46927 * 118.74047 * 53.60633 * 5 4 2 17 17 C 1.53188 * 108.77444 * 306.39644 * 16 5 4 18 18 C 1.53040 * 109.49517 * 239.92340 * 2 1 3 19 19 H 1.09002 * 109.46027 * 181.39814 * 18 2 1 20 20 C 1.52995 * 109.46246 * 61.42263 * 18 2 1 21 21 N 1.46498 * 109.47318 * 174.97278 * 20 18 2 22 22 C 1.36939 * 120.00480 * 179.97438 * 21 20 18 23 23 H 1.08000 * 119.99512 * 0.02562 * 22 21 20 24 24 C 1.38808 * 120.00100 * 179.97438 * 22 21 20 25 25 N 1.31626 * 119.99919 * 180.02562 * 24 22 21 26 26 Si 1.86801 * 120.00129 * 0.02562 * 24 22 21 27 27 H 1.48507 * 109.47149 * 89.99887 * 26 24 22 28 28 H 1.48503 * 109.47072 * 209.99628 * 26 24 22 29 29 H 1.48490 * 109.47175 * 329.99704 * 26 24 22 30 30 H 1.09004 * 109.47083 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47214 * 300.08181 * 1 2 3 32 32 H 1.09005 * 109.47022 * 60.08104 * 1 2 3 33 33 H 1.08995 * 109.59018 * 185.10658 * 4 2 1 34 34 H 1.09000 * 109.58814 * 305.38909 * 4 2 1 35 35 H 1.08004 * 120.05033 * 359.95138 * 9 8 6 36 36 H 1.07997 * 120.29335 * 180.02562 * 10 9 8 37 37 H 1.07998 * 120.24817 * 180.02562 * 11 10 9 38 38 H 1.09000 * 109.46995 * 275.25599 * 15 14 12 39 39 H 1.09001 * 109.46659 * 35.25260 * 15 14 12 40 40 H 1.08991 * 109.46928 * 155.25127 * 15 14 12 41 41 H 1.09003 * 109.58377 * 66.17836 * 16 5 4 42 42 H 1.08999 * 109.59189 * 186.60437 * 16 5 4 43 43 H 1.08999 * 109.49867 * 294.67487 * 17 16 5 44 44 H 1.09004 * 109.50251 * 174.58270 * 17 16 5 45 45 H 1.09003 * 109.46888 * 294.96475 * 20 18 2 46 46 H 1.08995 * 109.47616 * 54.97114 * 20 18 2 47 47 H 0.97005 * 119.99794 * 359.97438 * 21 20 18 48 48 H 0.96996 * 119.99947 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0413 -0.7239 1.2495 5 7 1.6516 -2.1382 1.1695 6 6 0.9739 -2.7220 2.1777 7 8 0.7591 -2.1051 3.2027 8 6 0.4920 -4.1130 2.0370 9 6 -0.7019 -4.3567 1.4264 10 6 -1.1622 -5.6762 1.2906 11 6 -0.4067 -6.7007 1.7723 12 6 0.8267 -6.4200 2.4007 13 8 1.5105 -7.3318 2.8348 14 7 1.2512 -5.1471 2.5161 15 6 2.5345 -4.8658 3.1646 16 6 2.0140 -2.9040 -0.0309 17 6 1.5030 -2.1557 -1.2661 18 6 2.0408 -0.7230 -1.2484 19 1 3.1305 -0.7444 -1.2354 20 6 1.5604 0.0170 -2.4984 21 7 2.1469 -0.6035 -3.6889 22 6 1.8579 -0.1079 -4.9323 23 1 1.1978 0.7407 -5.0352 24 6 2.4141 -0.6955 -6.0602 25 7 2.1366 -0.2188 -7.2553 26 14 3.5563 -2.1628 -5.8820 27 1 2.7618 -3.4167 -5.9251 28 1 4.5404 -2.1620 -6.9941 29 1 4.2746 -2.0763 -4.5852 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5151 0.8893 32 1 -0.3633 0.5126 -0.8908 33 1 3.1274 -0.6464 1.2980 34 1 1.6027 -0.2717 2.1390 35 1 -1.2932 -3.5360 1.0478 36 1 -2.1071 -5.8765 0.8075 37 1 -0.7476 -7.7208 1.6747 38 1 2.3921 -4.8122 4.2439 39 1 3.2419 -5.6613 2.9304 40 1 2.9241 -3.9147 2.8018 41 1 3.0979 -3.0043 -0.0869 42 1 1.5554 -3.8919 0.0135 43 1 0.4133 -2.1355 -1.2542 44 1 1.8480 -2.6627 -2.1673 45 1 0.4734 -0.0383 -2.5581 46 1 1.8687 1.0610 -2.4436 47 1 2.7401 -1.3654 -3.5963 48 1 2.5250 -0.6296 -8.0434 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001185128564.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:31:51 Heat of formation + Delta-G solvation = -38.010459 kcal Electronic energy + Delta-G solvation = -29849.332712 eV Core-core repulsion = 25904.375294 eV Total energy + Delta-G solvation = -3944.957418 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.78300 -41.30789 -39.48020 -37.93617 -36.74485 -35.70962 -34.91303 -33.45012 -32.29850 -31.45942 -28.79564 -28.76622 -28.05806 -25.96148 -24.94394 -24.25481 -23.77606 -22.88228 -21.58094 -20.03673 -19.44100 -18.91779 -18.51644 -18.10507 -17.63346 -16.99890 -16.73187 -16.42163 -16.28095 -15.95940 -15.67778 -15.61624 -15.23568 -14.98191 -14.80289 -14.65081 -14.36939 -14.08015 -13.81145 -13.79249 -13.66709 -13.53083 -13.25081 -13.09805 -12.97983 -12.82545 -12.67648 -12.41513 -12.19467 -12.03911 -11.83598 -11.75832 -11.58874 -11.32428 -11.28434 -11.18497 -10.96641 -10.90450 -9.84473 -9.24513 -9.18669 -8.00228 -5.33084 -0.44617 0.64892 0.84878 1.38694 1.43184 1.47281 1.50716 1.83830 2.47143 2.50679 2.90665 3.31762 3.48492 3.56272 3.68902 3.77125 3.88312 3.96339 4.02221 4.09552 4.14232 4.19161 4.22333 4.31965 4.35127 4.41556 4.52191 4.66194 4.68827 4.71095 4.76440 4.82580 4.84882 4.95090 4.97203 5.06818 5.15357 5.17747 5.18672 5.25625 5.29487 5.35805 5.44814 5.60533 5.79453 5.82207 6.04151 6.23985 6.68933 6.79629 7.11923 7.88502 8.07495 9.21686 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.013495 B = 0.003343 C = 0.002974 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2074.398710 B = 8373.347358 C = 9414.242532 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.090 4.090 3 H 0.096 0.904 4 C 0.119 3.881 5 N -0.582 5.582 6 C 0.566 3.434 7 O -0.547 6.547 8 C 0.111 3.889 9 C -0.175 4.175 10 C 0.000 4.000 11 C -0.239 4.239 12 C 0.502 3.498 13 O -0.594 6.594 14 N -0.486 5.486 15 C 0.057 3.943 16 C 0.108 3.892 17 C -0.126 4.126 18 C -0.084 4.084 19 H 0.078 0.922 20 C 0.160 3.840 21 N -0.755 5.755 22 C -0.232 4.232 23 H 0.053 0.947 24 C -0.066 4.066 25 N -0.987 5.987 26 Si 0.954 3.046 27 H -0.275 1.275 28 H -0.301 1.301 29 H -0.247 1.247 30 H 0.055 0.945 31 H 0.059 0.941 32 H 0.052 0.948 33 H 0.091 0.909 34 H 0.094 0.906 35 H 0.169 0.831 36 H 0.182 0.818 37 H 0.165 0.835 38 H 0.080 0.920 39 H 0.096 0.904 40 H 0.092 0.908 41 H 0.090 0.910 42 H 0.089 0.911 43 H 0.076 0.924 44 H 0.069 0.931 45 H 0.027 0.973 46 H 0.019 0.981 47 H 0.366 0.634 48 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.578 -7.941 22.415 24.048 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.110 4.110 3 H 0.114 0.886 4 C -0.002 4.002 5 N -0.313 5.313 6 C 0.351 3.649 7 O -0.425 6.425 8 C 0.001 3.999 9 C -0.199 4.199 10 C -0.021 4.021 11 C -0.261 4.261 12 C 0.306 3.694 13 O -0.480 6.480 14 N -0.198 5.198 15 C -0.084 4.084 16 C -0.014 4.014 17 C -0.164 4.164 18 C -0.103 4.103 19 H 0.096 0.904 20 C 0.034 3.966 21 N -0.402 5.402 22 C -0.363 4.363 23 H 0.071 0.929 24 C -0.257 4.257 25 N -0.638 5.638 26 Si 0.781 3.219 27 H -0.201 1.201 28 H -0.228 1.228 29 H -0.171 1.171 30 H 0.074 0.926 31 H 0.078 0.922 32 H 0.072 0.928 33 H 0.109 0.891 34 H 0.112 0.888 35 H 0.187 0.813 36 H 0.199 0.801 37 H 0.182 0.818 38 H 0.099 0.901 39 H 0.114 0.886 40 H 0.110 0.890 41 H 0.109 0.891 42 H 0.107 0.893 43 H 0.095 0.905 44 H 0.088 0.912 45 H 0.045 0.955 46 H 0.037 0.963 47 H 0.200 0.800 48 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -3.285 -7.990 23.128 24.689 hybrid contribution 0.648 -0.542 -0.694 1.094 sum -2.637 -8.532 22.434 24.146 Atomic orbital electron populations 1.21870 0.94744 1.01956 1.01744 1.21414 0.96715 1.00033 0.92809 0.88618 1.21859 1.01003 0.78487 0.98898 1.48153 1.53138 1.12418 1.17636 1.17971 0.78087 0.85247 0.83555 1.90860 1.57552 1.64969 1.29098 1.20346 0.94308 0.87542 0.97684 1.21167 0.95172 0.99892 1.03652 1.21773 0.99420 0.90139 0.90766 1.22483 0.94730 1.02949 1.05924 1.17786 0.88882 0.80684 0.82046 1.90918 1.59418 1.43584 1.54068 1.45519 1.19688 1.06432 1.48200 1.22258 0.83377 1.03703 0.99064 1.21948 1.01733 0.94771 0.82935 1.21928 1.02088 0.95278 0.97127 1.21275 1.00624 0.94862 0.93500 0.90414 1.20849 0.95946 0.94900 0.84860 1.42715 1.57509 1.37760 1.02174 1.19032 1.22367 1.10776 0.84151 0.92883 1.25525 1.02721 1.02818 0.94624 1.69897 1.50427 1.45376 0.98098 0.85432 0.78905 0.79741 0.77861 1.20148 1.22775 1.17093 0.92567 0.92232 0.92849 0.89082 0.88809 0.81350 0.80073 0.81763 0.90125 0.88583 0.88961 0.89137 0.89290 0.90534 0.91193 0.95501 0.96283 0.79975 0.93441 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.65 8.38 71.98 0.60 -2.05 16 2 C -0.09 -1.56 2.72 -10.72 -0.03 -1.59 16 3 H 0.10 1.57 8.14 -2.39 -0.02 1.55 16 4 C 0.12 1.80 5.81 86.36 0.50 2.30 16 5 N -0.58 -9.21 2.41 -822.30 -1.98 -11.19 16 6 C 0.57 10.66 5.23 86.80 0.45 11.12 16 7 O -0.55 -13.69 16.54 -3.84 -0.06 -13.76 16 8 C 0.11 1.93 4.42 40.45 0.18 2.11 16 9 C -0.18 -2.32 9.51 22.34 0.21 -2.11 16 10 C 0.00 0.00 10.08 22.30 0.22 0.23 16 11 C -0.24 -3.94 10.00 22.51 0.23 -3.71 16 12 C 0.50 11.67 7.43 85.00 0.63 12.30 16 13 O -0.59 -18.28 16.73 -5.18 -0.09 -18.36 16 14 N -0.49 -9.59 3.02 -660.59 -1.99 -11.58 16 15 C 0.06 0.98 9.98 127.77 1.27 2.25 16 16 C 0.11 1.63 6.35 86.36 0.55 2.18 16 17 C -0.13 -2.52 4.90 30.67 0.15 -2.37 16 18 C -0.08 -1.86 1.96 -10.77 -0.02 -1.88 16 19 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 20 C 0.16 5.26 5.19 86.38 0.45 5.71 16 21 N -0.76 -32.22 5.12 -343.47 -1.76 -33.98 16 22 C -0.23 -12.72 10.47 84.03 0.88 -11.84 16 23 H 0.05 3.23 8.06 -2.91 -0.02 3.20 16 24 C -0.07 -3.75 5.50 84.86 0.47 -3.29 16 25 N -0.99 -62.19 13.97 21.65 0.30 -61.89 16 26 Si 0.95 43.25 27.74 68.60 1.90 45.15 16 27 H -0.28 -12.07 7.11 99.48 0.71 -11.36 16 28 H -0.30 -14.09 7.11 99.48 0.71 -13.39 16 29 H -0.25 -9.78 6.52 99.48 0.65 -9.13 16 30 H 0.06 1.00 5.97 -2.38 -0.01 0.98 16 31 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 32 H 0.05 1.11 6.58 -2.38 -0.02 1.10 16 33 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 34 H 0.09 1.55 7.04 -2.39 -0.02 1.53 16 35 H 0.17 1.64 8.06 -2.91 -0.02 1.62 16 36 H 0.18 0.67 8.06 -2.91 -0.02 0.65 16 37 H 0.16 2.25 8.06 -2.91 -0.02 2.23 16 38 H 0.08 1.36 8.14 -2.39 -0.02 1.35 16 39 H 0.10 1.67 7.56 -2.39 -0.02 1.65 16 40 H 0.09 1.33 6.69 -2.39 -0.02 1.32 16 41 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 42 H 0.09 1.27 6.18 -2.39 -0.01 1.25 16 43 H 0.08 1.53 6.33 -2.39 -0.02 1.51 16 44 H 0.07 1.64 7.15 -2.38 -0.02 1.62 16 45 H 0.03 0.92 6.74 -2.39 -0.02 0.90 16 46 H 0.02 0.66 8.14 -2.39 -0.02 0.64 16 47 H 0.37 14.61 4.71 -92.70 -0.44 14.18 16 48 H 0.26 15.44 8.31 -92.71 -0.77 14.67 16 Total: -1.00 -76.77 376.68 3.55 -73.22 By element: Atomic # 1 Polarization: 22.54 SS G_CDS: 0.48 Total: 23.02 kcal Atomic # 6 Polarization: 2.62 SS G_CDS: 6.75 Total: 9.37 kcal Atomic # 7 Polarization: -113.21 SS G_CDS: -5.43 Total: -118.64 kcal Atomic # 8 Polarization: -31.97 SS G_CDS: -0.15 Total: -32.12 kcal Atomic # 14 Polarization: 43.25 SS G_CDS: 1.90 Total: 45.15 kcal Total: -76.77 3.55 -73.22 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001185128564.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.206 kcal (2) G-P(sol) polarization free energy of solvation -76.770 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.564 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.554 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.217 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.010 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds