Wall clock time and date at job start Tue Mar 31 2020 17:33:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 109.52152 * 2 1 4 4 C 1.53190 * 109.49626 * 120.08406 * 2 1 3 5 5 N 1.46920 * 108.77400 * 65.31751 * 4 2 1 6 6 C 1.34781 * 120.63019 * 233.62681 * 5 4 2 7 7 O 1.21684 * 119.99718 * 353.85946 * 6 5 4 8 8 C 1.46719 * 120.00030 * 173.85230 * 6 5 4 9 9 O 1.35349 * 126.64538 * 352.96851 * 8 6 5 10 10 C 1.33664 * 107.68429 * 179.97438 * 9 8 6 11 11 N 1.30613 * 109.15546 * 359.97438 * 10 9 8 12 12 C 1.33700 * 108.99631 * 359.76214 * 11 10 9 13 13 C 1.50697 * 126.27146 * 180.25894 * 12 11 10 14 14 C 1.52996 * 117.50354 * 8.88582 * 13 12 11 15 15 C 1.53001 * 117.49784 * 300.22374 * 13 12 11 16 16 C 1.46928 * 118.74174 * 53.61015 * 5 4 2 17 17 C 1.53192 * 108.77280 * 306.38829 * 16 5 4 18 18 C 1.53039 * 109.31348 * 54.63611 * 17 16 5 19 19 H 1.09005 * 109.46346 * 58.64900 * 18 17 16 20 20 C 1.52995 * 109.46388 * 178.62664 * 18 17 16 21 21 N 1.46497 * 109.47313 * 295.02845 * 20 18 17 22 22 C 1.36937 * 120.00377 * 180.02562 * 21 20 18 23 23 H 1.07996 * 120.00096 * 359.97438 * 22 21 20 24 24 C 1.38805 * 120.00127 * 180.02562 * 22 21 20 25 25 N 1.31621 * 120.00015 * 359.97438 * 24 22 21 26 26 Si 1.86800 * 120.00268 * 179.97438 * 24 22 21 27 27 H 1.48503 * 109.47113 * 89.99373 * 26 24 22 28 28 H 1.48499 * 109.47453 * 210.00056 * 26 24 22 29 29 H 1.48509 * 109.46958 * 329.99900 * 26 24 22 30 30 H 1.08994 * 109.47353 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.47009 * 300.08045 * 1 2 3 32 32 H 1.09004 * 109.47128 * 60.08007 * 1 2 3 33 33 H 1.08994 * 109.58542 * 305.52652 * 4 2 1 34 34 H 1.09006 * 109.70218 * 185.17433 * 4 2 1 35 35 H 1.08000 * 125.42272 * 180.02562 * 10 9 8 36 36 H 1.09004 * 115.54844 * 154.55922 * 13 12 11 37 37 H 1.09001 * 117.49671 * 0.02562 * 14 13 12 38 38 H 1.08997 * 117.49680 * 145.01935 * 14 13 12 39 39 H 1.09008 * 117.49619 * 214.98044 * 15 13 12 40 40 H 1.08993 * 117.50461 * 359.97438 * 15 13 12 41 41 H 1.09003 * 109.58787 * 186.60271 * 16 5 4 42 42 H 1.08995 * 109.58698 * 66.17386 * 16 5 4 43 43 H 1.08996 * 109.50207 * 294.68467 * 17 16 5 44 44 H 1.08998 * 109.52452 * 174.60172 * 17 16 5 45 45 H 1.09006 * 109.46990 * 55.02825 * 20 18 17 46 46 H 1.09002 * 109.47501 * 175.02162 * 20 18 17 47 47 H 0.97001 * 120.00050 * 359.97438 * 21 20 18 48 48 H 0.97002 * 120.00121 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0274 0.0000 4 6 2.0413 -0.7239 1.2495 5 7 1.6515 -2.1382 1.1694 6 6 0.9740 -2.7219 2.1777 7 8 0.7768 -2.1116 3.2118 8 6 0.4741 -4.0932 2.0285 9 8 0.4984 -4.8439 0.9025 10 6 -0.0515 -6.0274 1.1915 11 7 -0.4125 -6.0371 2.4468 12 6 -0.0988 -4.8606 2.9990 13 6 -0.3379 -4.4557 4.4307 14 6 -0.8078 -5.5399 5.4025 15 6 -1.7829 -4.4573 4.9334 16 6 2.0140 -2.9040 -0.0310 17 6 1.5030 -2.1557 -1.2661 18 6 2.0408 -0.7230 -1.2484 19 1 3.1306 -0.7443 -1.2353 20 6 1.5605 0.0173 -2.4982 21 7 2.1470 -0.6028 -3.6888 22 6 1.8588 -0.1062 -4.9320 23 1 1.1988 0.7423 -5.0348 24 6 2.4141 -0.6942 -6.0601 25 7 3.2182 -1.7287 -5.9349 26 14 2.0205 -0.0173 -7.7561 27 1 3.0139 1.0264 -8.1153 28 1 2.0749 -1.1167 -8.7528 29 1 0.6594 0.5768 -7.7482 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5151 0.8893 32 1 -0.3633 0.5126 -0.8907 33 1 1.6007 -0.2732 2.1388 34 1 3.1274 -0.6464 1.3005 35 1 -0.1767 -6.8456 0.4979 36 1 0.3294 -3.6863 4.8194 37 1 -0.9436 -6.5463 5.0064 38 1 -0.4500 -5.4837 6.4306 39 1 -2.0663 -3.6892 5.6531 40 1 -2.5607 -4.7507 4.2285 41 1 1.5554 -3.8919 0.0135 42 1 3.0979 -3.0042 -0.0869 43 1 0.4133 -2.1353 -1.2543 44 1 1.8476 -2.6625 -2.1675 45 1 0.4735 -0.0379 -2.5579 46 1 1.8687 1.0614 -2.4431 47 1 2.7401 -1.3648 -3.5965 48 1 3.6066 -2.1394 -6.7232 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001185139790.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:33:52 Heat of formation + Delta-G solvation = 34.487392 kcal Electronic energy + Delta-G solvation = -29437.071038 eV Core-core repulsion = 25495.257363 eV Total energy + Delta-G solvation = -3941.813675 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -43.75255 -40.34431 -38.28228 -37.55852 -35.16091 -34.62082 -33.39997 -31.87832 -30.69150 -30.35927 -27.14914 -26.97805 -24.55939 -24.03794 -23.37026 -23.06520 -22.55311 -21.63242 -21.02848 -20.23123 -18.59074 -17.78010 -17.25658 -17.07903 -16.88689 -16.08562 -15.73636 -15.40888 -14.97536 -14.82902 -14.46057 -14.21489 -14.10696 -13.84922 -13.76634 -13.39724 -12.94685 -12.54527 -12.47273 -12.30996 -12.20700 -12.02310 -11.71482 -11.63717 -11.48562 -11.09726 -10.97185 -10.95607 -10.83803 -10.76795 -10.69211 -10.39473 -10.23473 -10.21104 -10.05492 -9.92586 -9.66430 -9.13238 -8.88103 -8.64703 -6.92883 -5.79000 -3.06908 0.57672 2.11824 2.17650 2.84935 2.92642 3.41671 3.47139 3.48432 3.65759 3.76203 4.21481 4.31237 4.56608 4.69049 4.79032 4.83956 4.89681 4.95544 5.10080 5.10752 5.14156 5.20059 5.29766 5.43802 5.51264 5.57468 5.58545 5.64386 5.65666 5.74692 5.80320 5.85161 5.92181 5.97212 6.00407 6.04318 6.12393 6.15937 6.27630 6.34081 6.42578 6.44567 6.62700 6.78574 6.91567 7.10946 7.33224 7.68357 7.84666 8.40507 9.51660 10.09885 10.44411 11.44008 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.020135 B = 0.002657 C = 0.002463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1390.263063 B =10536.242272 C =11365.489170 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.099 4.099 3 H 0.085 0.915 4 C 0.119 3.881 5 N -0.593 5.593 6 C 0.607 3.393 7 O -0.521 6.521 8 C -0.103 4.103 9 O -0.179 6.179 10 C 0.196 3.804 11 N -0.492 5.492 12 C 0.107 3.893 13 C -0.089 4.089 14 C -0.163 4.163 15 C -0.157 4.157 16 C 0.089 3.911 17 C -0.124 4.124 18 C -0.090 4.090 19 H 0.072 0.928 20 C 0.159 3.841 21 N -0.732 5.732 22 C -0.237 4.237 23 H 0.069 0.931 24 C -0.015 4.015 25 N -0.935 5.935 26 Si 0.906 3.094 27 H -0.290 1.290 28 H -0.292 1.292 29 H -0.282 1.282 30 H 0.054 0.946 31 H 0.049 0.951 32 H 0.063 0.937 33 H 0.093 0.907 34 H 0.071 0.929 35 H 0.255 0.745 36 H 0.136 0.864 37 H 0.104 0.896 38 H 0.098 0.902 39 H 0.101 0.899 40 H 0.094 0.906 41 H 0.104 0.896 42 H 0.073 0.927 43 H 0.068 0.932 44 H 0.089 0.911 45 H 0.021 0.979 46 H 0.018 0.982 47 H 0.383 0.617 48 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.785 -7.009 20.614 22.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.118 4.118 3 H 0.103 0.897 4 C -0.003 4.003 5 N -0.324 5.324 6 C 0.394 3.606 7 O -0.399 6.399 8 C -0.157 4.157 9 O -0.066 6.066 10 C -0.029 4.029 11 N -0.220 5.220 12 C -0.016 4.016 13 C -0.107 4.107 14 C -0.200 4.200 15 C -0.195 4.195 16 C -0.032 4.032 17 C -0.162 4.162 18 C -0.108 4.108 19 H 0.090 0.910 20 C 0.031 3.969 21 N -0.376 5.376 22 C -0.368 4.368 23 H 0.087 0.913 24 C -0.210 4.210 25 N -0.583 5.583 26 Si 0.737 3.263 27 H -0.218 1.218 28 H -0.218 1.218 29 H -0.208 1.208 30 H 0.073 0.927 31 H 0.068 0.932 32 H 0.082 0.918 33 H 0.111 0.889 34 H 0.089 0.911 35 H 0.271 0.729 36 H 0.154 0.846 37 H 0.122 0.878 38 H 0.117 0.883 39 H 0.120 0.880 40 H 0.113 0.887 41 H 0.121 0.879 42 H 0.091 0.909 43 H 0.086 0.914 44 H 0.107 0.893 45 H 0.039 0.961 46 H 0.035 0.965 47 H 0.217 0.783 48 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -6.211 -7.062 21.235 23.225 hybrid contribution 0.396 0.422 -1.734 1.828 sum -5.815 -6.640 19.501 21.406 Atomic orbital electron populations 1.21872 0.94873 1.01931 1.01629 1.21491 0.96690 0.99572 0.94075 0.89703 1.21779 0.99840 0.79180 0.99486 1.47990 1.54452 1.11995 1.17983 1.16448 0.78210 0.82144 0.83820 1.90830 1.59341 1.62174 1.27582 1.22865 1.12072 0.95361 0.85447 1.84714 1.61781 1.24483 1.35610 1.28481 0.92768 0.87887 0.93725 1.70254 1.22139 1.22304 1.07351 1.20996 0.96271 0.88548 0.95795 1.20479 1.00036 1.02987 0.87222 1.23006 1.02967 0.95437 0.98621 1.22956 0.91609 1.01768 1.03141 1.22414 1.00824 0.95918 0.84054 1.21941 1.01362 0.95905 0.97008 1.21328 1.00316 0.94669 0.94537 0.90952 1.20708 0.95914 0.94640 0.85620 1.42379 1.56813 1.37576 1.00853 1.19224 1.23019 1.10762 0.83843 0.91294 1.24719 1.00137 0.98373 0.97804 1.69650 1.35770 1.24374 1.28552 0.86204 0.77808 0.77800 0.84472 1.21752 1.21786 1.20812 0.92742 0.93229 0.91788 0.88916 0.91052 0.72899 0.84614 0.87795 0.88316 0.88017 0.88706 0.87927 0.90858 0.91384 0.89284 0.96086 0.96456 0.78316 0.93554 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.88 8.38 37.16 0.31 -1.56 16 2 C -0.10 -1.24 2.72 -90.50 -0.25 -1.49 16 3 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 4 C 0.12 1.41 5.81 -3.71 -0.02 1.39 16 5 N -0.59 -7.49 2.41 -174.30 -0.42 -7.91 16 6 C 0.61 8.31 7.65 -12.83 -0.10 8.21 16 7 O -0.52 -7.94 14.41 5.20 0.07 -7.87 16 8 C -0.10 -1.31 6.86 -36.84 -0.25 -1.56 16 9 O -0.18 -1.96 7.33 4.41 0.03 -1.93 16 10 C 0.20 1.72 13.21 52.24 0.69 2.41 16 11 N -0.49 -5.52 10.89 -10.88 -0.12 -5.63 16 12 C 0.11 1.32 6.67 -82.46 -0.55 0.77 16 13 C -0.09 -0.98 5.55 -91.77 -0.51 -1.49 16 14 C -0.16 -1.46 10.15 -26.70 -0.27 -1.73 16 15 C -0.16 -1.48 10.24 -26.69 -0.27 -1.75 16 16 C 0.09 1.10 6.33 -3.71 -0.02 1.08 16 17 C -0.12 -1.80 4.91 -26.61 -0.13 -1.93 16 18 C -0.09 -1.35 1.96 -90.58 -0.18 -1.53 16 19 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 20 C 0.16 3.06 5.18 -4.05 -0.02 3.03 16 21 N -0.73 -17.89 5.32 -59.91 -0.32 -18.20 16 22 C -0.24 -6.54 9.99 -15.06 -0.15 -6.69 16 23 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 24 C -0.01 -0.41 5.50 -17.43 -0.10 -0.51 16 25 N -0.93 -27.70 13.06 55.49 0.72 -26.97 16 26 Si 0.91 22.20 29.55 -169.99 -5.02 17.17 16 27 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 28 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 29 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 30 H 0.05 0.75 5.97 -51.93 -0.31 0.44 16 31 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.06 0.86 6.58 -51.93 -0.34 0.52 16 33 H 0.09 1.12 7.04 -51.93 -0.37 0.75 16 34 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.26 0.91 8.06 -52.49 -0.42 0.49 16 36 H 0.14 1.60 6.79 -51.93 -0.35 1.25 16 37 H 0.10 0.98 7.92 -51.93 -0.41 0.57 16 38 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.10 0.81 8.14 -51.92 -0.42 0.39 16 40 H 0.09 0.93 8.14 -51.93 -0.42 0.50 16 41 H 0.10 1.21 3.83 -54.63 -0.21 1.00 16 42 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 43 H 0.07 1.02 6.33 -51.93 -0.33 0.69 16 44 H 0.09 1.48 7.15 -51.93 -0.37 1.10 16 45 H 0.02 0.42 6.74 -51.93 -0.35 0.07 16 46 H 0.02 0.35 8.14 -51.93 -0.42 -0.08 16 47 H 0.38 9.73 6.85 -40.82 -0.28 9.45 16 48 H 0.25 7.32 8.31 -40.82 -0.34 6.98 16 LS Contribution 378.08 15.07 5.70 5.70 Total: -1.00 -32.46 378.08 -8.26 -40.72 By element: Atomic # 1 Polarization: 15.36 SS G_CDS: -7.09 Total: 8.27 kcal Atomic # 6 Polarization: -1.53 SS G_CDS: -1.82 Total: -3.35 kcal Atomic # 7 Polarization: -58.59 SS G_CDS: -0.13 Total: -58.72 kcal Atomic # 8 Polarization: -9.90 SS G_CDS: 0.11 Total: -9.80 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -5.02 Total: 17.17 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -32.46 -8.26 -40.72 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001185139790.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.207 kcal (2) G-P(sol) polarization free energy of solvation -32.455 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.752 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.264 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.720 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.487 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds