Wall clock time and date at job start Tue Mar 31 2020 17:33:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 109.52152 * 2 1 4 4 C 1.53190 * 109.49626 * 120.08406 * 2 1 3 5 5 N 1.46920 * 108.77400 * 65.31751 * 4 2 1 6 6 C 1.34781 * 120.63019 * 233.62681 * 5 4 2 7 7 O 1.21684 * 119.99718 * 353.85946 * 6 5 4 8 8 C 1.46719 * 120.00030 * 173.85230 * 6 5 4 9 9 O 1.35349 * 126.64538 * 352.96851 * 8 6 5 10 10 C 1.33664 * 107.68429 * 179.97438 * 9 8 6 11 11 N 1.30613 * 109.15546 * 359.97438 * 10 9 8 12 12 C 1.33700 * 108.99631 * 359.76214 * 11 10 9 13 13 C 1.50697 * 126.27146 * 180.25894 * 12 11 10 14 14 C 1.52996 * 117.50354 * 8.88582 * 13 12 11 15 15 C 1.53001 * 117.49784 * 300.22374 * 13 12 11 16 16 C 1.46928 * 118.74174 * 53.61015 * 5 4 2 17 17 C 1.53192 * 108.77280 * 306.38829 * 16 5 4 18 18 C 1.53039 * 109.31348 * 54.63611 * 17 16 5 19 19 H 1.09005 * 109.46346 * 58.64900 * 18 17 16 20 20 C 1.52995 * 109.46388 * 178.62664 * 18 17 16 21 21 N 1.46497 * 109.47313 * 295.02845 * 20 18 17 22 22 C 1.36937 * 120.00377 * 180.02562 * 21 20 18 23 23 H 1.07996 * 120.00096 * 359.97438 * 22 21 20 24 24 C 1.38805 * 120.00127 * 180.02562 * 22 21 20 25 25 N 1.31621 * 120.00015 * 359.97438 * 24 22 21 26 26 Si 1.86800 * 120.00268 * 179.97438 * 24 22 21 27 27 H 1.48503 * 109.47113 * 89.99373 * 26 24 22 28 28 H 1.48499 * 109.47453 * 210.00056 * 26 24 22 29 29 H 1.48509 * 109.46958 * 329.99900 * 26 24 22 30 30 H 1.08994 * 109.47353 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.47009 * 300.08045 * 1 2 3 32 32 H 1.09004 * 109.47128 * 60.08007 * 1 2 3 33 33 H 1.08994 * 109.58542 * 305.52652 * 4 2 1 34 34 H 1.09006 * 109.70218 * 185.17433 * 4 2 1 35 35 H 1.08000 * 125.42272 * 180.02562 * 10 9 8 36 36 H 1.09004 * 115.54844 * 154.55922 * 13 12 11 37 37 H 1.09001 * 117.49671 * 0.02562 * 14 13 12 38 38 H 1.08997 * 117.49680 * 145.01935 * 14 13 12 39 39 H 1.09008 * 117.49619 * 214.98044 * 15 13 12 40 40 H 1.08993 * 117.50461 * 359.97438 * 15 13 12 41 41 H 1.09003 * 109.58787 * 186.60271 * 16 5 4 42 42 H 1.08995 * 109.58698 * 66.17386 * 16 5 4 43 43 H 1.08996 * 109.50207 * 294.68467 * 17 16 5 44 44 H 1.08998 * 109.52452 * 174.60172 * 17 16 5 45 45 H 1.09006 * 109.46990 * 55.02825 * 20 18 17 46 46 H 1.09002 * 109.47501 * 175.02162 * 20 18 17 47 47 H 0.97001 * 120.00050 * 359.97438 * 21 20 18 48 48 H 0.97002 * 120.00121 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0274 0.0000 4 6 2.0413 -0.7239 1.2495 5 7 1.6515 -2.1382 1.1694 6 6 0.9740 -2.7219 2.1777 7 8 0.7768 -2.1116 3.2118 8 6 0.4741 -4.0932 2.0285 9 8 0.4984 -4.8439 0.9025 10 6 -0.0515 -6.0274 1.1915 11 7 -0.4125 -6.0371 2.4468 12 6 -0.0988 -4.8606 2.9990 13 6 -0.3379 -4.4557 4.4307 14 6 -0.8078 -5.5399 5.4025 15 6 -1.7829 -4.4573 4.9334 16 6 2.0140 -2.9040 -0.0310 17 6 1.5030 -2.1557 -1.2661 18 6 2.0408 -0.7230 -1.2484 19 1 3.1306 -0.7443 -1.2353 20 6 1.5605 0.0173 -2.4982 21 7 2.1470 -0.6028 -3.6888 22 6 1.8588 -0.1062 -4.9320 23 1 1.1988 0.7423 -5.0348 24 6 2.4141 -0.6942 -6.0601 25 7 3.2182 -1.7287 -5.9349 26 14 2.0205 -0.0173 -7.7561 27 1 3.0139 1.0264 -8.1153 28 1 2.0749 -1.1167 -8.7528 29 1 0.6594 0.5768 -7.7482 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5151 0.8893 32 1 -0.3633 0.5126 -0.8907 33 1 1.6007 -0.2732 2.1388 34 1 3.1274 -0.6464 1.3005 35 1 -0.1767 -6.8456 0.4979 36 1 0.3294 -3.6863 4.8194 37 1 -0.9436 -6.5463 5.0064 38 1 -0.4500 -5.4837 6.4306 39 1 -2.0663 -3.6892 5.6531 40 1 -2.5607 -4.7507 4.2285 41 1 1.5554 -3.8919 0.0135 42 1 3.0979 -3.0042 -0.0869 43 1 0.4133 -2.1353 -1.2543 44 1 1.8476 -2.6625 -2.1675 45 1 0.4735 -0.0379 -2.5579 46 1 1.8687 1.0614 -2.4431 47 1 2.7401 -1.3648 -3.5965 48 1 3.6066 -2.1394 -6.7232 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001185139790.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:33:52 Heat of formation + Delta-G solvation = 13.423874 kcal Electronic energy + Delta-G solvation = -29437.984421 eV Core-core repulsion = 25495.257363 eV Total energy + Delta-G solvation = -3942.727058 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -44.57457 -41.40192 -39.38567 -38.39257 -36.61436 -35.61013 -34.77210 -33.29448 -32.00950 -31.56473 -28.53558 -28.10547 -25.85401 -25.06844 -24.66865 -24.14691 -23.30188 -22.89191 -22.07507 -21.15122 -19.82399 -19.09433 -18.60362 -17.98634 -17.87915 -17.12043 -16.79395 -16.51788 -16.34254 -15.84760 -15.57572 -15.50285 -15.35629 -15.16057 -14.91942 -14.69082 -14.42049 -13.85142 -13.73211 -13.53454 -13.04233 -12.98767 -12.93578 -12.79798 -12.72855 -12.53935 -12.40735 -12.19641 -12.07655 -11.91899 -11.89023 -11.68111 -11.57530 -11.47493 -11.26056 -11.19924 -11.03876 -10.87896 -10.04876 -9.63266 -8.95922 -7.94061 -5.21491 -0.29120 1.29545 1.36498 1.47780 1.48663 1.57005 1.87336 1.98751 2.56650 2.92500 3.03181 3.35306 3.39534 3.47478 3.70836 3.76249 3.79919 3.93609 4.01259 4.09278 4.18132 4.27142 4.30163 4.32610 4.40164 4.44111 4.57798 4.63582 4.70857 4.73480 4.74574 4.79883 4.85995 4.95539 4.97174 5.05226 5.14137 5.15629 5.17601 5.21878 5.25013 5.26974 5.33869 5.46866 5.52170 5.59429 6.11983 6.29098 6.48804 6.84355 7.35777 8.12477 8.36268 9.29319 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.020135 B = 0.002657 C = 0.002463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1390.263063 B =10536.242272 C =11365.489170 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.090 4.090 3 H 0.098 0.902 4 C 0.121 3.879 5 N -0.592 5.592 6 C 0.605 3.395 7 O -0.543 6.543 8 C -0.131 4.131 9 O -0.186 6.186 10 C 0.219 3.781 11 N -0.515 5.515 12 C 0.106 3.894 13 C -0.112 4.112 14 C -0.147 4.147 15 C -0.153 4.153 16 C 0.098 3.902 17 C -0.115 4.115 18 C -0.080 4.080 19 H 0.070 0.930 20 C 0.159 3.841 21 N -0.742 5.742 22 C -0.243 4.243 23 H 0.071 0.929 24 C -0.073 4.073 25 N -0.967 5.967 26 Si 0.969 3.031 27 H -0.288 1.288 28 H -0.295 1.295 29 H -0.272 1.272 30 H 0.042 0.958 31 H 0.060 0.940 32 H 0.055 0.945 33 H 0.094 0.906 34 H 0.086 0.914 35 H 0.303 0.697 36 H 0.125 0.875 37 H 0.100 0.900 38 H 0.118 0.882 39 H 0.115 0.885 40 H 0.089 0.911 41 H 0.112 0.888 42 H 0.082 0.918 43 H 0.060 0.940 44 H 0.065 0.935 45 H 0.019 0.981 46 H 0.017 0.983 47 H 0.376 0.624 48 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.332 -7.317 21.296 23.392 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.110 4.110 3 H 0.117 0.883 4 C -0.001 4.001 5 N -0.323 5.323 6 C 0.394 3.606 7 O -0.423 6.423 8 C -0.186 4.186 9 O -0.073 6.073 10 C -0.005 4.005 11 N -0.244 5.244 12 C -0.017 4.017 13 C -0.131 4.131 14 C -0.184 4.184 15 C -0.190 4.190 16 C -0.024 4.024 17 C -0.153 4.153 18 C -0.098 4.098 19 H 0.088 0.912 20 C 0.033 3.967 21 N -0.385 5.385 22 C -0.375 4.375 23 H 0.089 0.911 24 C -0.266 4.266 25 N -0.618 5.618 26 Si 0.799 3.201 27 H -0.215 1.215 28 H -0.221 1.221 29 H -0.197 1.197 30 H 0.061 0.939 31 H 0.079 0.921 32 H 0.074 0.926 33 H 0.112 0.888 34 H 0.104 0.896 35 H 0.317 0.683 36 H 0.143 0.857 37 H 0.118 0.882 38 H 0.136 0.864 39 H 0.133 0.867 40 H 0.107 0.893 41 H 0.129 0.871 42 H 0.100 0.900 43 H 0.079 0.921 44 H 0.084 0.916 45 H 0.037 0.963 46 H 0.035 0.965 47 H 0.208 0.792 48 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -6.779 -7.344 21.945 24.113 hybrid contribution 0.503 0.470 -1.915 2.034 sum -6.276 -6.874 20.030 22.087 Atomic orbital electron populations 1.21816 0.95018 1.01229 1.01759 1.21435 0.96425 1.00076 0.93030 0.88337 1.21813 1.00705 0.78725 0.98845 1.48007 1.54246 1.12271 1.17762 1.16568 0.77903 0.82547 0.83610 1.90805 1.60221 1.62948 1.28346 1.22668 1.14126 0.95530 0.86228 1.84664 1.62344 1.25162 1.35173 1.29629 0.89612 0.87632 0.93660 1.70292 1.23515 1.22027 1.08532 1.21258 0.95410 0.88814 0.96219 1.20519 1.01043 1.04121 0.87396 1.23057 1.01737 0.94653 0.98965 1.23014 0.90578 1.02343 1.03049 1.22333 1.01277 0.95950 0.82828 1.21786 1.00780 0.95603 0.97154 1.21210 1.00096 0.94816 0.93721 0.91164 1.20834 0.95426 0.94750 0.85692 1.42559 1.56847 1.37518 1.01569 1.19593 1.22267 1.10432 0.85245 0.91075 1.25489 1.00685 0.99068 1.01315 1.69794 1.37113 1.25743 1.29121 0.85203 0.77933 0.76939 0.80066 1.21512 1.22116 1.19713 0.93854 0.92070 0.92615 0.88765 0.89602 0.68252 0.85729 0.88180 0.86407 0.86656 0.89273 0.87095 0.89995 0.92112 0.91620 0.96341 0.96491 0.79185 0.94008 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.50 8.38 71.98 0.60 -2.90 16 2 C -0.09 -2.15 2.72 -10.71 -0.03 -2.18 16 3 H 0.10 2.13 8.14 -2.39 -0.02 2.11 16 4 C 0.12 2.69 5.81 86.36 0.50 3.19 16 5 N -0.59 -14.47 2.41 -823.58 -1.98 -16.45 16 6 C 0.61 16.36 7.65 86.46 0.66 17.02 16 7 O -0.54 -16.51 14.41 -4.30 -0.06 -16.57 16 8 C -0.13 -3.27 6.86 24.04 0.16 -3.10 16 9 O -0.19 -3.84 7.33 -7.13 -0.05 -3.89 16 10 C 0.22 3.35 13.21 130.42 1.72 5.07 16 11 N -0.52 -10.83 10.89 -303.13 -3.30 -14.13 16 12 C 0.11 2.55 6.67 41.83 0.28 2.83 16 13 C -0.11 -2.44 5.55 -11.54 -0.06 -2.51 16 14 C -0.15 -2.44 10.15 30.62 0.31 -2.13 16 15 C -0.15 -2.72 10.24 30.62 0.31 -2.40 16 16 C 0.10 2.33 6.33 86.36 0.55 2.88 16 17 C -0.11 -3.32 4.91 30.67 0.15 -3.17 16 18 C -0.08 -2.35 1.96 -10.77 -0.02 -2.37 16 19 H 0.07 2.14 8.14 -2.38 -0.02 2.12 16 20 C 0.16 6.11 5.18 86.38 0.45 6.56 16 21 N -0.74 -36.55 5.32 -343.47 -1.83 -38.38 16 22 C -0.24 -13.43 9.99 84.03 0.84 -12.59 16 23 H 0.07 3.81 7.83 -2.91 -0.02 3.79 16 24 C -0.07 -4.15 5.50 84.86 0.47 -3.68 16 25 N -0.97 -57.91 13.06 21.65 0.28 -57.63 16 26 Si 0.97 45.66 29.55 68.60 2.03 47.68 16 27 H -0.29 -13.37 7.11 99.48 0.71 -12.66 16 28 H -0.29 -13.92 7.11 99.48 0.71 -13.21 16 29 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 30 H 0.04 1.17 5.97 -2.39 -0.01 1.15 16 31 H 0.06 1.37 8.14 -2.39 -0.02 1.36 16 32 H 0.05 1.46 6.58 -2.38 -0.02 1.44 16 33 H 0.09 2.14 7.04 -2.39 -0.02 2.12 16 34 H 0.09 1.70 8.14 -2.38 -0.02 1.68 16 35 H 0.30 1.04 8.06 -2.91 -0.02 1.02 16 36 H 0.12 2.97 6.79 -2.39 -0.02 2.95 16 37 H 0.10 1.75 7.92 -2.39 -0.02 1.73 16 38 H 0.12 1.47 8.14 -2.39 -0.02 1.45 16 39 H 0.12 1.70 8.14 -2.38 -0.02 1.68 16 40 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 41 H 0.11 2.52 3.83 -45.21 -0.17 2.35 16 42 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 43 H 0.06 1.83 6.33 -2.39 -0.02 1.81 16 44 H 0.07 2.22 7.15 -2.39 -0.02 2.20 16 45 H 0.02 0.73 6.74 -2.38 -0.02 0.72 16 46 H 0.02 0.66 8.14 -2.39 -0.02 0.65 16 47 H 0.38 19.43 6.85 -92.71 -0.63 18.79 16 48 H 0.25 14.59 8.31 -92.71 -0.77 13.82 16 Total: -1.00 -69.97 378.08 2.17 -67.80 By element: Atomic # 1 Polarization: 30.86 SS G_CDS: 0.19 Total: 31.05 kcal Atomic # 6 Polarization: -6.37 SS G_CDS: 6.89 Total: 0.53 kcal Atomic # 7 Polarization: -119.77 SS G_CDS: -6.83 Total: -126.60 kcal Atomic # 8 Polarization: -20.35 SS G_CDS: -0.11 Total: -20.47 kcal Atomic # 14 Polarization: 45.66 SS G_CDS: 2.03 Total: 47.68 kcal Total: -69.97 2.17 -67.80 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001185139790.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.228 kcal (2) G-P(sol) polarization free energy of solvation -69.975 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.254 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.170 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.804 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds