Wall clock time and date at job start Tue Mar 31 2020 17:33:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.09007 * 109.49323 * 2 1 4 4 C 1.53182 * 109.52424 * 239.91795 * 2 1 3 5 5 N 1.46924 * 108.77761 * 294.66733 * 4 2 1 6 6 C 1.34780 * 120.63230 * 126.37172 * 5 4 2 7 7 O 1.21680 * 119.99832 * 352.84967 * 6 5 4 8 8 C 1.46721 * 120.00051 * 172.85089 * 6 5 4 9 9 O 1.35343 * 126.64325 * 352.51372 * 8 6 5 10 10 C 1.33669 * 107.68763 * 179.97438 * 9 8 6 11 11 N 1.30623 * 109.15038 * 359.97438 * 10 9 8 12 12 C 1.33694 * 108.99283 * 359.72923 * 11 10 9 13 13 C 1.50701 * 126.27197 * 180.27421 * 12 11 10 14 14 C 1.53003 * 117.49977 * 8.93063 * 13 12 11 15 15 C 1.53006 * 117.49764 * 300.27224 * 13 12 11 16 16 C 1.46922 * 118.73781 * 306.38994 * 5 4 2 17 17 C 1.53196 * 108.77681 * 53.61038 * 16 5 4 18 18 C 1.53039 * 109.49851 * 120.06306 * 2 1 3 19 19 H 1.08993 * 109.46207 * 178.62566 * 18 2 1 20 20 C 1.53002 * 109.45968 * 298.60051 * 18 2 1 21 21 N 1.46504 * 109.47110 * 185.00043 * 20 18 2 22 22 C 1.36936 * 119.99765 * 180.02562 * 21 20 18 23 23 H 1.07996 * 120.00255 * 359.97438 * 22 21 20 24 24 C 1.38816 * 119.99880 * 180.02562 * 22 21 20 25 25 N 1.31610 * 120.00271 * 179.97438 * 24 22 21 26 26 Si 1.86800 * 119.99854 * 359.97438 * 24 22 21 27 27 H 1.48499 * 109.47182 * 89.99910 * 26 24 22 28 28 H 1.48497 * 109.47169 * 210.00243 * 26 24 22 29 29 H 1.48500 * 109.47047 * 330.00175 * 26 24 22 30 30 H 1.09001 * 109.47252 * 299.93495 * 1 2 3 31 31 H 1.08996 * 109.46788 * 59.93583 * 1 2 3 32 32 H 1.09003 * 109.46728 * 179.97438 * 1 2 3 33 33 H 1.08999 * 109.58967 * 54.45558 * 4 2 1 34 34 H 1.09008 * 109.58939 * 174.73607 * 4 2 1 35 35 H 1.07992 * 125.42614 * 179.97438 * 10 9 8 36 36 H 1.08998 * 115.55429 * 154.60798 * 13 12 11 37 37 H 1.08996 * 117.49842 * 0.02562 * 14 13 12 38 38 H 1.08997 * 117.49798 * 145.02628 * 14 13 12 39 39 H 1.09001 * 117.50439 * 214.98261 * 15 13 12 40 40 H 1.09006 * 117.49598 * 359.97438 * 15 13 12 41 41 H 1.09004 * 109.58821 * 173.39342 * 16 5 4 42 42 H 1.09002 * 109.59188 * 293.68172 * 16 5 4 43 43 H 1.08997 * 109.50007 * 185.41520 * 17 16 5 44 44 H 1.09000 * 109.49759 * 65.30990 * 17 16 5 45 45 H 1.09005 * 109.47610 * 65.00148 * 20 18 2 46 46 H 1.08998 * 109.47386 * 305.00075 * 20 18 2 47 47 H 0.96996 * 119.99772 * 359.97438 * 21 20 18 48 48 H 0.97001 * 120.00432 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8938 1.0276 0.0000 4 6 2.0420 -0.7237 -1.2493 5 7 1.6529 -2.1382 -1.1693 6 6 0.9760 -2.7223 -2.1778 7 8 0.5678 -2.0500 -3.1062 8 6 0.7311 -4.1688 -2.1560 9 8 1.2387 -5.0608 -1.2737 10 6 0.7705 -6.2688 -1.6027 11 7 -0.0036 -6.1580 -2.6490 12 6 -0.0575 -4.8736 -3.0163 13 6 -0.8426 -4.3091 -4.1721 14 6 -1.8218 -5.2441 -4.8848 15 6 -0.5164 -4.8347 -5.5715 16 6 2.0155 -2.9037 0.0312 17 6 1.5037 -2.1557 1.2663 18 6 2.0409 -0.7227 1.2486 19 1 3.1306 -0.7437 1.2357 20 6 1.5601 0.0173 2.4984 21 7 2.1461 -0.6032 3.6891 22 6 1.8566 -0.1075 4.9323 23 1 1.1965 0.7411 5.0351 24 6 2.4123 -0.6951 6.0605 25 7 2.1344 -0.2185 7.2554 26 14 3.5545 -2.1625 5.8828 27 1 4.9544 -1.6863 5.7457 28 1 3.4410 -3.0267 7.0851 29 1 3.1762 -2.9410 4.6761 30 1 -0.3634 0.5128 0.8906 31 1 -0.3633 0.5148 -0.8894 32 1 -0.3633 -1.0277 -0.0005 33 1 1.6015 -0.2733 -2.1388 34 1 3.1280 -0.6435 -1.2988 35 1 0.9962 -7.1897 -1.0857 36 1 -1.1240 -3.2599 -4.0816 37 1 -1.8984 -6.2674 -4.5175 38 1 -2.7471 -4.8100 -5.2635 39 1 -0.5834 -4.1314 -6.4016 40 1 0.2665 -5.5885 -5.6561 41 1 1.5573 -3.8918 -0.0133 42 1 3.0993 -3.0056 0.0862 43 1 1.8488 -2.6624 2.1675 44 1 0.4140 -2.1358 1.2540 45 1 0.4730 -0.0378 2.5577 46 1 1.8684 1.0614 2.4437 47 1 2.7387 -1.3656 3.5968 48 1 2.5224 -0.6293 8.0438 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001185139792.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:33:54 Heat of formation + Delta-G solvation = 13.539365 kcal Electronic energy + Delta-G solvation = -29493.604943 eV Core-core repulsion = 25550.882893 eV Total energy + Delta-G solvation = -3942.722050 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -44.56895 -41.42086 -39.40553 -38.40365 -36.74063 -35.60997 -34.79331 -33.47884 -32.31222 -31.57170 -28.81313 -28.11446 -25.78161 -24.99384 -24.55160 -24.17114 -23.30193 -22.86838 -22.04395 -21.17719 -20.11265 -19.36963 -18.55880 -18.02616 -17.93171 -17.16280 -16.77504 -16.47764 -16.30587 -15.94963 -15.72567 -15.51801 -15.26980 -15.07052 -14.93001 -14.70901 -14.59816 -13.95249 -13.82219 -13.61690 -13.28063 -13.06602 -12.96962 -12.83420 -12.74384 -12.53446 -12.42085 -12.16739 -12.10897 -11.91321 -11.85402 -11.68485 -11.57707 -11.48356 -11.32480 -11.24001 -11.05381 -10.92616 -10.05270 -9.63333 -9.27317 -8.01725 -5.35273 -0.29028 1.32357 1.34407 1.37539 1.43096 1.50350 1.82889 2.01688 2.49803 2.91607 3.03634 3.29581 3.35754 3.46763 3.53670 3.73009 3.77240 3.92471 3.97765 4.07329 4.08712 4.20147 4.26916 4.31545 4.36862 4.42260 4.55318 4.61884 4.70016 4.72693 4.73051 4.78660 4.83414 4.93442 4.94238 5.02263 5.11146 5.13393 5.15400 5.21043 5.22959 5.24558 5.29177 5.45006 5.56360 5.76715 6.11596 6.22033 6.48663 6.84581 7.09432 7.85224 8.05783 9.20080 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.018146 B = 0.002910 C = 0.002646 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1542.697921 B = 9620.029510 C =10580.372315 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.091 4.091 3 H 0.099 0.901 4 C 0.120 3.880 5 N -0.593 5.593 6 C 0.605 3.395 7 O -0.543 6.543 8 C -0.130 4.130 9 O -0.185 6.185 10 C 0.220 3.780 11 N -0.517 5.517 12 C 0.105 3.895 13 C -0.113 4.113 14 C -0.150 4.150 15 C -0.149 4.149 16 C 0.102 3.898 17 C -0.124 4.124 18 C -0.083 4.083 19 H 0.082 0.918 20 C 0.161 3.839 21 N -0.755 5.755 22 C -0.235 4.235 23 H 0.051 0.949 24 C -0.068 4.068 25 N -0.987 5.987 26 Si 0.958 3.042 27 H -0.278 1.278 28 H -0.298 1.298 29 H -0.243 1.243 30 H 0.052 0.948 31 H 0.059 0.941 32 H 0.043 0.957 33 H 0.092 0.908 34 H 0.091 0.909 35 H 0.305 0.695 36 H 0.122 0.878 37 H 0.100 0.900 38 H 0.115 0.885 39 H 0.115 0.885 40 H 0.091 0.909 41 H 0.105 0.895 42 H 0.089 0.911 43 H 0.071 0.929 44 H 0.060 0.940 45 H 0.021 0.979 46 H 0.023 0.977 47 H 0.367 0.633 48 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.220 -12.828 -26.288 29.277 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.110 4.110 3 H 0.117 0.883 4 C -0.001 4.001 5 N -0.324 5.324 6 C 0.393 3.607 7 O -0.423 6.423 8 C -0.185 4.185 9 O -0.073 6.073 10 C -0.004 4.004 11 N -0.246 5.246 12 C -0.018 4.018 13 C -0.132 4.132 14 C -0.187 4.187 15 C -0.186 4.186 16 C -0.019 4.019 17 C -0.163 4.163 18 C -0.102 4.102 19 H 0.101 0.899 20 C 0.035 3.965 21 N -0.401 5.401 22 C -0.366 4.366 23 H 0.069 0.931 24 C -0.259 4.259 25 N -0.637 5.637 26 Si 0.784 3.216 27 H -0.204 1.204 28 H -0.225 1.225 29 H -0.168 1.168 30 H 0.071 0.929 31 H 0.078 0.922 32 H 0.062 0.938 33 H 0.111 0.889 34 H 0.109 0.891 35 H 0.320 0.680 36 H 0.140 0.860 37 H 0.118 0.882 38 H 0.133 0.867 39 H 0.133 0.867 40 H 0.110 0.890 41 H 0.123 0.877 42 H 0.107 0.893 43 H 0.090 0.910 44 H 0.079 0.921 45 H 0.039 0.961 46 H 0.041 0.959 47 H 0.201 0.799 48 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -1.789 -12.796 -26.868 29.813 hybrid contribution 0.817 -0.048 1.359 1.586 sum -0.972 -12.843 -25.510 28.577 Atomic orbital electron populations 1.21819 0.95279 1.01212 1.01601 1.21423 0.96237 1.00222 0.93116 0.88289 1.21818 1.00742 0.78723 0.98827 1.47998 1.54482 1.12358 1.17572 1.16557 0.78165 0.83301 0.82634 1.90814 1.52415 1.62545 1.36499 1.22626 1.07363 0.91532 0.96943 1.84676 1.58143 1.18162 1.46272 1.29616 0.89523 0.89347 0.91879 1.70288 1.21092 1.18695 1.14489 1.21232 0.95739 0.88441 0.96423 1.20507 1.03590 0.99310 0.89753 1.23054 0.94161 0.99823 1.01694 1.23011 0.99509 1.03016 0.93082 1.22224 1.01762 0.95429 0.82535 1.21914 1.01131 0.95709 0.97499 1.21279 1.00774 0.94666 0.93472 0.89943 1.20830 0.95636 0.95066 0.84957 1.42690 1.57774 1.37501 1.02123 1.19023 1.22626 1.10743 0.84201 0.93080 1.25580 1.02792 1.02967 0.94555 1.69898 1.50354 1.45390 0.98096 0.85371 0.78956 0.79510 0.77732 1.20395 1.22464 1.16753 0.92890 0.92225 0.93798 0.88924 0.89081 0.68038 0.85992 0.88176 0.86666 0.86695 0.89001 0.87705 0.89296 0.91027 0.92094 0.96148 0.95928 0.79892 0.93378 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.41 8.39 71.99 0.60 -2.81 16 2 C -0.09 -1.97 2.72 -10.72 -0.03 -2.00 16 3 H 0.10 1.96 8.14 -2.38 -0.02 1.94 16 4 C 0.12 2.39 5.84 86.36 0.50 2.89 16 5 N -0.59 -12.94 2.41 -823.58 -1.99 -14.93 16 6 C 0.61 15.17 7.65 86.46 0.66 15.84 16 7 O -0.54 -15.77 14.40 -4.29 -0.06 -15.83 16 8 C -0.13 -2.97 6.79 24.04 0.16 -2.81 16 9 O -0.19 -3.26 7.45 -7.12 -0.05 -3.31 16 10 C 0.22 2.83 13.21 130.42 1.72 4.55 16 11 N -0.52 -10.03 10.89 -303.12 -3.30 -13.33 16 12 C 0.10 2.38 6.66 41.83 0.28 2.65 16 13 C -0.11 -2.38 5.55 -11.54 -0.06 -2.44 16 14 C -0.15 -2.44 10.15 30.62 0.31 -2.13 16 15 C -0.15 -2.48 10.24 30.62 0.31 -2.16 16 16 C 0.10 2.06 6.12 86.36 0.53 2.59 16 17 C -0.12 -3.12 4.91 30.67 0.15 -2.96 16 18 C -0.08 -2.17 1.96 -10.77 -0.02 -2.19 16 19 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 20 C 0.16 5.82 5.19 86.38 0.45 6.27 16 21 N -0.75 -33.98 5.12 -343.44 -1.76 -35.74 16 22 C -0.23 -13.33 10.47 84.03 0.88 -12.45 16 23 H 0.05 3.22 8.06 -2.91 -0.02 3.19 16 24 C -0.07 -3.97 5.50 84.86 0.47 -3.50 16 25 N -0.99 -63.25 13.97 21.65 0.30 -62.94 16 26 Si 0.96 44.06 27.74 68.60 1.90 45.96 16 27 H -0.28 -12.45 7.11 99.48 0.71 -11.75 16 28 H -0.30 -13.98 7.11 99.48 0.71 -13.27 16 29 H -0.24 -9.70 6.52 99.48 0.65 -9.05 16 30 H 0.05 1.38 6.58 -2.39 -0.02 1.36 16 31 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 32 H 0.04 1.14 5.97 -2.39 -0.01 1.12 16 33 H 0.09 1.95 7.00 -2.39 -0.02 1.93 16 34 H 0.09 1.49 8.14 -2.38 -0.02 1.48 16 35 H 0.30 0.17 8.06 -2.91 -0.02 0.15 16 36 H 0.12 2.89 6.80 -2.39 -0.02 2.87 16 37 H 0.10 1.71 7.92 -2.39 -0.02 1.69 16 38 H 0.12 1.46 8.14 -2.39 -0.02 1.45 16 39 H 0.11 1.57 8.14 -2.39 -0.02 1.55 16 40 H 0.09 1.56 8.14 -2.38 -0.02 1.54 16 41 H 0.11 2.02 4.26 -15.14 -0.06 1.95 16 42 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 43 H 0.07 1.98 7.15 -2.39 -0.02 1.96 16 44 H 0.06 1.66 6.34 -2.39 -0.02 1.65 16 45 H 0.02 0.79 6.74 -2.38 -0.02 0.77 16 46 H 0.02 0.85 8.14 -2.39 -0.02 0.83 16 47 H 0.37 15.38 4.70 -92.71 -0.44 14.95 16 48 H 0.26 15.68 8.31 -92.71 -0.77 14.91 16 Total: -1.00 -75.12 375.21 2.40 -72.71 By element: Atomic # 1 Polarization: 27.63 SS G_CDS: 0.44 Total: 28.07 kcal Atomic # 6 Polarization: -7.58 SS G_CDS: 6.92 Total: -0.67 kcal Atomic # 7 Polarization: -120.19 SS G_CDS: -6.74 Total: -126.94 kcal Atomic # 8 Polarization: -19.03 SS G_CDS: -0.11 Total: -19.14 kcal Atomic # 14 Polarization: 44.06 SS G_CDS: 1.90 Total: 45.96 kcal Total: -75.12 2.40 -72.71 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001185139792.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.254 kcal (2) G-P(sol) polarization free energy of solvation -75.117 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.138 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.402 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.715 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.539 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds