Wall clock time and date at job start Tue Mar 31 2020 17:33:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08999 * 109.52061 * 2 1 4 4 C 1.53194 * 109.49758 * 239.91586 * 2 1 3 5 5 N 1.46924 * 108.77086 * 185.41297 * 4 2 1 6 6 C 1.34782 * 120.62973 * 233.63252 * 5 4 2 7 7 O 1.21580 * 119.99908 * 173.02722 * 6 5 4 8 8 C 1.47511 * 120.00050 * 353.02007 * 6 5 4 9 9 C 1.36827 * 126.94696 * 172.74282 * 8 6 5 10 10 C 1.41255 * 103.84588 * 180.02562 * 9 8 6 11 11 C 1.50697 * 126.70355 * 180.02562 * 10 9 8 12 12 C 1.53005 * 117.49629 * 343.74181 * 11 10 9 13 13 C 1.53009 * 117.49828 * 275.08376 * 11 10 9 14 14 N 1.30131 * 106.59559 * 359.97438 * 10 9 8 15 15 O 1.20886 * 111.97881 * 359.70124 * 14 10 9 16 16 C 1.46928 * 118.73993 * 53.61341 * 5 4 2 17 17 C 1.53189 * 108.77230 * 306.38539 * 16 5 4 18 18 C 1.53040 * 109.49450 * 120.08035 * 2 1 3 19 19 H 1.09002 * 109.45248 * 61.30592 * 18 2 1 20 20 C 1.52997 * 109.45997 * 301.33673 * 18 2 1 21 21 N 1.46499 * 109.47074 * 174.93366 * 20 18 2 22 22 C 1.36940 * 120.00126 * 180.02562 * 21 20 18 23 23 H 1.07998 * 119.99724 * 0.02562 * 22 21 20 24 24 C 1.38813 * 120.00334 * 180.02562 * 22 21 20 25 25 N 1.31619 * 119.99588 * 0.02562 * 24 22 21 26 26 Si 1.86798 * 120.00369 * 179.97438 * 24 22 21 27 27 H 1.48493 * 109.47404 * 179.97438 * 26 24 22 28 28 H 1.48504 * 109.46853 * 300.00088 * 26 24 22 29 29 H 1.48504 * 109.46857 * 59.99757 * 26 24 22 30 30 H 1.09000 * 109.47421 * 299.91864 * 1 2 3 31 31 H 1.08999 * 109.47099 * 59.92395 * 1 2 3 32 32 H 1.09008 * 109.46997 * 179.97438 * 1 2 3 33 33 H 1.09003 * 109.58032 * 65.62676 * 4 2 1 34 34 H 1.08990 * 109.58957 * 305.20153 * 4 2 1 35 35 H 1.08001 * 128.07225 * 359.97438 * 9 8 6 36 36 H 1.08999 * 115.55345 * 129.41358 * 11 10 9 37 37 H 1.08993 * 117.50067 * 0.02562 * 12 11 10 38 38 H 1.09005 * 117.49489 * 145.02605 * 12 11 10 39 39 H 1.08997 * 117.49935 * 214.97561 * 13 11 10 40 40 H 1.08999 * 117.49405 * 0.02562 * 13 11 10 41 41 H 1.09000 * 109.58454 * 186.59845 * 16 5 4 42 42 H 1.08990 * 109.70306 * 66.24684 * 16 5 4 43 43 H 1.09001 * 109.49854 * 294.68189 * 17 16 5 44 44 H 1.09000 * 109.52032 * 174.60456 * 17 16 5 45 45 H 1.08997 * 109.47330 * 54.93326 * 20 18 2 46 46 H 1.09004 * 109.47453 * 294.93237 * 20 18 2 47 47 H 0.96996 * 120.00206 * 0.02562 * 21 20 18 48 48 H 0.96997 * 120.00139 * 0.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0414 -0.7239 -1.2496 5 7 3.5046 -0.8291 -1.1694 6 6 4.2812 -0.3856 -2.1778 7 8 5.4899 -0.3608 -2.0486 8 6 3.6648 0.0697 -3.4382 9 6 4.2965 0.6708 -4.4926 10 6 3.2590 0.8964 -5.4243 11 6 3.3908 1.5388 -6.7810 12 6 4.6660 2.3354 -7.0646 13 6 3.3388 3.0666 -6.8473 14 7 2.1673 0.4400 -4.8826 15 8 2.3677 -0.0279 -3.7861 16 6 4.1053 -1.4267 0.0309 17 6 3.5708 -0.6949 1.2661 18 6 2.0408 -0.7231 1.2484 19 1 1.6967 -1.7573 1.2351 20 6 1.5036 -0.0232 2.4984 21 7 1.8916 -0.7839 3.6887 22 6 1.5199 -0.3467 4.9320 23 1 0.9403 0.5588 5.0350 24 6 1.8879 -1.0672 6.0600 25 7 2.5946 -2.1704 5.9345 26 14 1.3814 -0.4703 7.7561 27 1 1.8945 -1.4099 8.7851 28 1 1.9467 0.8822 7.9940 29 1 -0.1001 -0.4089 7.8372 30 1 -0.3634 0.5126 0.8907 31 1 -0.3633 0.5150 -0.8893 32 1 -0.3633 -1.0277 -0.0005 33 1 1.7638 -0.1580 -2.1389 34 1 1.6054 -1.7216 -1.2980 35 1 5.3438 0.9164 -4.5894 36 1 2.9495 0.9839 -7.6089 37 1 5.4097 2.3943 -6.2700 38 1 5.0634 2.3048 -8.0792 39 1 2.8637 3.5167 -7.7190 40 1 3.2097 3.6069 -5.9095 41 1 5.1896 -1.3246 -0.0136 42 1 3.8398 -2.4822 0.0881 43 1 3.9159 0.3389 1.2541 44 1 3.9334 -1.1891 2.1674 45 1 0.4167 0.0356 2.4431 46 1 1.9193 0.9827 2.5586 47 1 2.4118 -1.5974 3.5962 48 1 2.8586 -2.4797 5.0539 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001185236529.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:33:18 Heat of formation + Delta-G solvation = 67.748863 kcal Electronic energy + Delta-G solvation = -28830.855235 eV Core-core repulsion = 24890.483885 eV Total energy + Delta-G solvation = -3940.371350 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -45.40297 -40.42750 -38.30814 -38.06632 -35.32321 -33.82866 -33.56517 -32.86473 -31.78777 -30.26111 -27.01889 -26.74923 -25.15218 -24.66505 -23.45314 -23.00909 -22.41575 -21.66348 -21.60134 -20.14037 -19.50268 -18.15460 -17.98177 -17.24059 -16.84024 -16.46771 -15.78054 -15.41430 -15.00827 -14.93722 -14.60912 -14.47704 -14.03908 -13.94453 -13.59780 -13.44585 -13.12044 -12.85302 -12.69161 -12.50948 -12.29689 -12.05837 -11.98854 -11.90930 -11.69738 -11.63339 -11.00057 -10.97055 -10.74522 -10.71464 -10.65017 -10.44295 -10.29312 -10.20319 -10.14795 -10.00542 -9.93543 -9.17295 -8.88257 -8.80523 -6.98129 -6.09493 -3.08710 0.46704 1.61219 2.21927 2.64502 2.85836 3.12803 3.52124 3.52440 3.55644 3.73141 3.99027 4.27185 4.33746 4.52150 4.54147 4.61201 4.67184 4.77029 4.84038 4.90257 4.96980 5.08023 5.11755 5.24140 5.29014 5.33221 5.46619 5.47893 5.53911 5.56798 5.57952 5.61644 5.67132 5.76086 5.80943 5.86440 5.91621 6.08200 6.14983 6.20705 6.30456 6.38853 6.52593 6.73042 6.82901 7.00365 7.57699 7.80382 7.81740 8.76783 9.24474 10.10673 10.25760 11.39107 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.026421 B = 0.002235 C = 0.002161 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1059.507201 B =12523.872118 C =12953.418586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.096 4.096 3 H 0.074 0.926 4 C 0.101 3.899 5 N -0.592 5.592 6 C 0.602 3.398 7 O -0.516 6.516 8 C -0.076 4.076 9 C -0.149 4.149 10 C 0.044 3.956 11 C -0.090 4.090 12 C -0.163 4.163 13 C -0.162 4.162 14 N -0.343 5.343 15 O 0.119 5.881 16 C 0.111 3.889 17 C -0.125 4.125 18 C -0.091 4.091 19 H 0.073 0.927 20 C 0.162 3.838 21 N -0.743 5.743 22 C -0.330 4.330 23 H 0.063 0.937 24 C -0.047 4.047 25 N -0.944 5.944 26 Si 1.080 2.920 27 H -0.285 1.285 28 H -0.296 1.296 29 H -0.296 1.296 30 H 0.069 0.931 31 H 0.053 0.947 32 H 0.058 0.942 33 H 0.096 0.904 34 H 0.078 0.922 35 H 0.182 0.818 36 H 0.126 0.874 37 H 0.101 0.899 38 H 0.106 0.894 39 H 0.105 0.895 40 H 0.098 0.902 41 H 0.095 0.905 42 H 0.075 0.925 43 H 0.066 0.934 44 H 0.087 0.913 45 H 0.026 0.974 46 H 0.017 0.983 47 H 0.366 0.634 48 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.342 6.494 -27.146 27.944 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.116 4.116 3 H 0.093 0.907 4 C -0.021 4.021 5 N -0.324 5.324 6 C 0.387 3.613 7 O -0.392 6.392 8 C -0.141 4.141 9 C -0.171 4.171 10 C -0.113 4.113 11 C -0.108 4.108 12 C -0.200 4.200 13 C -0.200 4.200 14 N -0.044 5.044 15 O 0.048 5.952 16 C -0.010 4.010 17 C -0.163 4.163 18 C -0.110 4.110 19 H 0.091 0.909 20 C 0.035 3.965 21 N -0.389 5.389 22 C -0.461 4.461 23 H 0.081 0.919 24 C -0.244 4.244 25 N -0.590 5.590 26 Si 0.910 3.090 27 H -0.210 1.210 28 H -0.223 1.223 29 H -0.223 1.223 30 H 0.088 0.912 31 H 0.072 0.928 32 H 0.077 0.923 33 H 0.114 0.886 34 H 0.097 0.903 35 H 0.200 0.800 36 H 0.144 0.856 37 H 0.120 0.880 38 H 0.125 0.875 39 H 0.123 0.877 40 H 0.117 0.883 41 H 0.113 0.887 42 H 0.093 0.907 43 H 0.085 0.915 44 H 0.106 0.894 45 H 0.043 0.957 46 H 0.035 0.965 47 H 0.200 0.800 48 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 0.674 6.300 -25.783 26.550 hybrid contribution 0.697 0.248 -1.613 1.775 sum 1.371 6.548 -27.396 28.201 Atomic orbital electron populations 1.21843 0.93981 1.02437 1.02277 1.21451 0.96419 0.99887 0.93808 0.90732 1.22291 0.78225 1.02016 0.99615 1.48066 1.07551 1.58956 1.17801 1.16648 0.85915 0.78035 0.80748 1.90863 1.12750 1.55203 1.80408 1.24248 0.84726 1.06321 0.98847 1.22778 1.02090 1.00897 0.91371 1.22638 0.88609 1.02097 0.98005 1.20135 1.04917 0.94090 0.91694 1.23086 0.90911 1.02269 1.03730 1.23065 1.00577 0.92264 1.04047 1.73695 1.23899 1.12048 0.94797 1.85144 1.25538 1.59232 1.25307 1.21858 0.99530 0.96887 0.82739 1.21935 0.95811 1.01432 0.97108 1.21389 0.94803 1.00229 0.94618 0.90877 1.20683 0.96721 0.93956 0.85130 1.42379 1.66054 1.28662 1.01777 1.20019 1.31979 1.08838 0.85232 0.91893 1.25760 0.99604 0.96647 1.02385 1.70890 1.39942 1.23116 1.25059 0.83245 0.75355 0.74916 0.75435 1.21042 1.22314 1.22314 0.91160 0.92783 0.92299 0.88638 0.90337 0.80025 0.85608 0.88035 0.87540 0.87674 0.88349 0.88702 0.90657 0.91535 0.89426 0.95652 0.96499 0.80043 0.93480 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.66 8.82 37.16 0.33 -1.34 16 2 C -0.10 -1.17 2.41 -90.50 -0.22 -1.39 16 3 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 4 C 0.10 1.10 5.43 -3.71 -0.02 1.08 16 5 N -0.59 -7.29 2.97 -174.01 -0.52 -7.81 16 6 C 0.60 7.89 7.68 -12.48 -0.10 7.79 16 7 O -0.52 -8.04 16.35 5.29 0.09 -7.96 16 8 C -0.08 -0.87 6.89 -36.31 -0.25 -1.12 16 9 C -0.15 -1.49 10.27 -38.95 -0.40 -1.89 16 10 C 0.04 0.43 6.94 -82.17 -0.57 -0.14 16 11 C -0.09 -0.63 6.33 -91.77 -0.58 -1.21 16 12 C -0.16 -0.83 10.05 -26.69 -0.27 -1.10 16 13 C -0.16 -0.93 10.24 -26.69 -0.27 -1.21 16 14 N -0.34 -3.92 12.04 33.52 0.40 -3.51 16 15 O 0.12 1.34 7.95 15.53 0.12 1.46 16 16 C 0.11 1.42 6.44 -3.71 -0.02 1.40 16 17 C -0.12 -1.85 5.25 -26.61 -0.14 -1.99 16 18 C -0.09 -1.37 1.73 -90.58 -0.16 -1.53 16 19 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 20 C 0.16 3.17 5.41 -4.04 -0.02 3.15 16 21 N -0.74 -18.35 5.32 -59.91 -0.32 -18.67 16 22 C -0.33 -9.30 9.99 -15.06 -0.15 -9.45 16 23 H 0.06 1.76 7.83 -52.49 -0.41 1.35 16 24 C -0.05 -1.35 5.50 -17.43 -0.10 -1.45 16 25 N -0.94 -29.07 13.70 55.49 0.76 -28.31 16 26 Si 1.08 25.99 29.92 -169.99 -5.09 20.90 16 27 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 28 H -0.30 -6.82 7.11 56.52 0.40 -6.42 16 29 H -0.30 -6.80 7.11 56.52 0.40 -6.40 16 30 H 0.07 0.88 6.29 -51.93 -0.33 0.55 16 31 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.06 0.64 8.14 -51.92 -0.42 0.22 16 33 H 0.10 0.99 4.28 -52.49 -0.22 0.76 16 34 H 0.08 0.79 8.14 -51.93 -0.42 0.36 16 35 H 0.18 1.49 7.62 -52.49 -0.40 1.10 16 36 H 0.13 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.10 0.51 7.33 -51.93 -0.38 0.13 16 38 H 0.11 0.38 8.14 -51.93 -0.42 -0.04 16 39 H 0.10 0.45 8.14 -51.93 -0.42 0.03 16 40 H 0.10 0.64 8.14 -51.93 -0.42 0.21 16 41 H 0.09 1.26 7.00 -51.93 -0.36 0.90 16 42 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 43 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 44 H 0.09 1.47 7.15 -51.93 -0.37 1.10 16 45 H 0.03 0.50 6.14 -51.93 -0.32 0.19 16 46 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 47 H 0.37 9.15 5.68 -40.82 -0.23 8.92 16 48 H 0.25 7.65 6.77 -40.82 -0.28 7.37 16 LS Contribution 382.72 15.07 5.77 5.77 Total: -1.00 -33.16 382.72 -8.89 -42.05 By element: Atomic # 1 Polarization: 13.63 SS G_CDS: -7.17 Total: 6.45 kcal Atomic # 6 Polarization: -7.44 SS G_CDS: -2.94 Total: -10.38 kcal Atomic # 7 Polarization: -58.62 SS G_CDS: 0.33 Total: -58.30 kcal Atomic # 8 Polarization: -6.71 SS G_CDS: 0.21 Total: -6.50 kcal Atomic # 14 Polarization: 25.99 SS G_CDS: -5.09 Total: 20.90 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -33.16 -8.89 -42.05 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001185236529.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.800 kcal (2) G-P(sol) polarization free energy of solvation -33.160 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.640 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.891 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.051 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.749 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds