Wall clock time and date at job start Tue Mar 31 2020 17:33:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08999 * 109.52061 * 2 1 4 4 C 1.53194 * 109.49758 * 239.91586 * 2 1 3 5 5 N 1.46924 * 108.77086 * 185.41297 * 4 2 1 6 6 C 1.34782 * 120.62973 * 233.63252 * 5 4 2 7 7 O 1.21580 * 119.99908 * 173.02722 * 6 5 4 8 8 C 1.47511 * 120.00050 * 353.02007 * 6 5 4 9 9 C 1.36827 * 126.94696 * 172.74282 * 8 6 5 10 10 C 1.41255 * 103.84588 * 180.02562 * 9 8 6 11 11 C 1.50697 * 126.70355 * 180.02562 * 10 9 8 12 12 C 1.53005 * 117.49629 * 343.74181 * 11 10 9 13 13 C 1.53009 * 117.49828 * 275.08376 * 11 10 9 14 14 N 1.30131 * 106.59559 * 359.97438 * 10 9 8 15 15 O 1.20886 * 111.97881 * 359.70124 * 14 10 9 16 16 C 1.46928 * 118.73993 * 53.61341 * 5 4 2 17 17 C 1.53189 * 108.77230 * 306.38539 * 16 5 4 18 18 C 1.53040 * 109.49450 * 120.08035 * 2 1 3 19 19 H 1.09002 * 109.45248 * 61.30592 * 18 2 1 20 20 C 1.52997 * 109.45997 * 301.33673 * 18 2 1 21 21 N 1.46499 * 109.47074 * 174.93366 * 20 18 2 22 22 C 1.36940 * 120.00126 * 180.02562 * 21 20 18 23 23 H 1.07998 * 119.99724 * 0.02562 * 22 21 20 24 24 C 1.38813 * 120.00334 * 180.02562 * 22 21 20 25 25 N 1.31619 * 119.99588 * 0.02562 * 24 22 21 26 26 Si 1.86798 * 120.00369 * 179.97438 * 24 22 21 27 27 H 1.48493 * 109.47404 * 179.97438 * 26 24 22 28 28 H 1.48504 * 109.46853 * 300.00088 * 26 24 22 29 29 H 1.48504 * 109.46857 * 59.99757 * 26 24 22 30 30 H 1.09000 * 109.47421 * 299.91864 * 1 2 3 31 31 H 1.08999 * 109.47099 * 59.92395 * 1 2 3 32 32 H 1.09008 * 109.46997 * 179.97438 * 1 2 3 33 33 H 1.09003 * 109.58032 * 65.62676 * 4 2 1 34 34 H 1.08990 * 109.58957 * 305.20153 * 4 2 1 35 35 H 1.08001 * 128.07225 * 359.97438 * 9 8 6 36 36 H 1.08999 * 115.55345 * 129.41358 * 11 10 9 37 37 H 1.08993 * 117.50067 * 0.02562 * 12 11 10 38 38 H 1.09005 * 117.49489 * 145.02605 * 12 11 10 39 39 H 1.08997 * 117.49935 * 214.97561 * 13 11 10 40 40 H 1.08999 * 117.49405 * 0.02562 * 13 11 10 41 41 H 1.09000 * 109.58454 * 186.59845 * 16 5 4 42 42 H 1.08990 * 109.70306 * 66.24684 * 16 5 4 43 43 H 1.09001 * 109.49854 * 294.68189 * 17 16 5 44 44 H 1.09000 * 109.52032 * 174.60456 * 17 16 5 45 45 H 1.08997 * 109.47330 * 54.93326 * 20 18 2 46 46 H 1.09004 * 109.47453 * 294.93237 * 20 18 2 47 47 H 0.96996 * 120.00206 * 0.02562 * 21 20 18 48 48 H 0.96997 * 120.00139 * 0.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0414 -0.7239 -1.2496 5 7 3.5046 -0.8291 -1.1694 6 6 4.2812 -0.3856 -2.1778 7 8 5.4899 -0.3608 -2.0486 8 6 3.6648 0.0697 -3.4382 9 6 4.2965 0.6708 -4.4926 10 6 3.2590 0.8964 -5.4243 11 6 3.3908 1.5388 -6.7810 12 6 4.6660 2.3354 -7.0646 13 6 3.3388 3.0666 -6.8473 14 7 2.1673 0.4400 -4.8826 15 8 2.3677 -0.0279 -3.7861 16 6 4.1053 -1.4267 0.0309 17 6 3.5708 -0.6949 1.2661 18 6 2.0408 -0.7231 1.2484 19 1 1.6967 -1.7573 1.2351 20 6 1.5036 -0.0232 2.4984 21 7 1.8916 -0.7839 3.6887 22 6 1.5199 -0.3467 4.9320 23 1 0.9403 0.5588 5.0350 24 6 1.8879 -1.0672 6.0600 25 7 2.5946 -2.1704 5.9345 26 14 1.3814 -0.4703 7.7561 27 1 1.8945 -1.4099 8.7851 28 1 1.9467 0.8822 7.9940 29 1 -0.1001 -0.4089 7.8372 30 1 -0.3634 0.5126 0.8907 31 1 -0.3633 0.5150 -0.8893 32 1 -0.3633 -1.0277 -0.0005 33 1 1.7638 -0.1580 -2.1389 34 1 1.6054 -1.7216 -1.2980 35 1 5.3438 0.9164 -4.5894 36 1 2.9495 0.9839 -7.6089 37 1 5.4097 2.3943 -6.2700 38 1 5.0634 2.3048 -8.0792 39 1 2.8637 3.5167 -7.7190 40 1 3.2097 3.6069 -5.9095 41 1 5.1896 -1.3246 -0.0136 42 1 3.8398 -2.4822 0.0881 43 1 3.9159 0.3389 1.2541 44 1 3.9334 -1.1891 2.1674 45 1 0.4167 0.0356 2.4431 46 1 1.9193 0.9827 2.5586 47 1 2.4118 -1.5974 3.5962 48 1 2.8586 -2.4797 5.0539 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001185236529.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:33:16 Heat of formation + Delta-G solvation = 48.411125 kcal Electronic energy + Delta-G solvation = -28831.693782 eV Core-core repulsion = 24890.483885 eV Total energy + Delta-G solvation = -3941.209897 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -46.21489 -41.49590 -39.47496 -38.59139 -36.93715 -35.16584 -34.45014 -33.89001 -33.04599 -31.89288 -28.45279 -27.75051 -26.00070 -25.76106 -25.16617 -23.80661 -23.09897 -22.92344 -22.57116 -21.19357 -20.47183 -19.40208 -18.99228 -18.79379 -17.73934 -17.41448 -16.84580 -16.47006 -16.35194 -16.01481 -15.60010 -15.52662 -15.37812 -15.25397 -15.00644 -14.58188 -14.34628 -14.27603 -13.87550 -13.30309 -13.19383 -13.11150 -12.90142 -12.77552 -12.68881 -12.55871 -12.43882 -12.25098 -12.09423 -11.92277 -11.84994 -11.65807 -11.50854 -11.42651 -11.37579 -11.11926 -11.02887 -10.88756 -10.73862 -9.89089 -9.07706 -8.38806 -5.31987 -0.41602 0.85622 1.28932 1.58280 1.67279 1.68070 1.84612 1.92937 2.59436 2.71531 2.89393 3.18935 3.39987 3.53413 3.62038 3.68353 3.74117 3.76260 3.88693 3.92247 3.98110 4.05382 4.10602 4.20367 4.34400 4.36616 4.42020 4.54223 4.58585 4.65858 4.70345 4.74329 4.77590 4.77982 4.87727 4.97055 5.01774 5.04113 5.04769 5.06696 5.17189 5.19564 5.30949 5.37565 5.48021 5.59499 5.99715 6.51383 6.59716 6.95194 7.11512 8.02430 8.12827 9.13396 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.026421 B = 0.002235 C = 0.002161 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1059.507201 B =12523.872118 C =12953.418586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.088 4.088 3 H 0.069 0.931 4 C 0.106 3.894 5 N -0.591 5.591 6 C 0.604 3.396 7 O -0.546 6.546 8 C -0.089 4.089 9 C -0.141 4.141 10 C 0.049 3.951 11 C -0.109 4.109 12 C -0.150 4.150 13 C -0.161 4.161 14 N -0.360 5.360 15 O 0.115 5.885 16 C 0.119 3.881 17 C -0.117 4.117 18 C -0.080 4.080 19 H 0.074 0.926 20 C 0.162 3.838 21 N -0.754 5.754 22 C -0.334 4.334 23 H 0.063 0.937 24 C -0.105 4.105 25 N -0.974 5.974 26 Si 1.127 2.873 27 H -0.292 1.292 28 H -0.280 1.280 29 H -0.277 1.277 30 H 0.054 0.946 31 H 0.075 0.925 32 H 0.064 0.936 33 H 0.107 0.893 34 H 0.095 0.905 35 H 0.198 0.802 36 H 0.135 0.865 37 H 0.102 0.898 38 H 0.126 0.874 39 H 0.121 0.879 40 H 0.088 0.912 41 H 0.089 0.911 42 H 0.091 0.909 43 H 0.055 0.945 44 H 0.064 0.936 45 H 0.029 0.971 46 H 0.007 0.993 47 H 0.362 0.638 48 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.683 7.367 -29.175 30.098 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.108 4.108 3 H 0.087 0.913 4 C -0.016 4.016 5 N -0.322 5.322 6 C 0.390 3.610 7 O -0.425 6.425 8 C -0.155 4.155 9 C -0.163 4.163 10 C -0.109 4.109 11 C -0.127 4.127 12 C -0.187 4.187 13 C -0.198 4.198 14 N -0.063 5.063 15 O 0.045 5.955 16 C -0.003 4.003 17 C -0.156 4.156 18 C -0.099 4.099 19 H 0.092 0.908 20 C 0.036 3.964 21 N -0.399 5.399 22 C -0.465 4.465 23 H 0.081 0.919 24 C -0.296 4.296 25 N -0.622 5.622 26 Si 0.952 3.048 27 H -0.218 1.218 28 H -0.206 1.206 29 H -0.203 1.203 30 H 0.073 0.927 31 H 0.094 0.906 32 H 0.083 0.917 33 H 0.125 0.875 34 H 0.113 0.887 35 H 0.215 0.785 36 H 0.153 0.847 37 H 0.120 0.880 38 H 0.144 0.856 39 H 0.140 0.860 40 H 0.107 0.893 41 H 0.107 0.893 42 H 0.109 0.891 43 H 0.073 0.927 44 H 0.082 0.918 45 H 0.047 0.953 46 H 0.025 0.975 47 H 0.195 0.805 48 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -0.019 7.197 -27.850 28.765 hybrid contribution 0.893 0.049 -1.075 1.398 sum 0.874 7.246 -28.925 29.832 Atomic orbital electron populations 1.21811 0.92851 1.02959 1.02584 1.21373 0.97266 0.99292 0.92833 0.91270 1.22357 0.77237 1.02952 0.99084 1.48098 1.08152 1.58570 1.17387 1.16782 0.85580 0.77446 0.81209 1.90844 1.13985 1.56522 1.81105 1.24012 0.85266 1.07556 0.98643 1.23068 1.02872 0.99633 0.90771 1.23072 0.87875 1.01130 0.98834 1.20324 1.07053 0.94854 0.90498 1.23213 0.90292 1.00337 1.04873 1.23142 1.01258 0.91135 1.04307 1.73680 1.24697 1.12891 0.95002 1.85107 1.25259 1.59616 1.25470 1.21721 0.99183 0.97369 0.82004 1.21799 0.95774 1.00726 0.97285 1.21269 0.94669 1.00061 0.93890 0.90754 1.20828 0.96884 0.93336 0.85363 1.42574 1.65980 1.28950 1.02406 1.20366 1.30950 1.08477 0.86748 0.91910 1.27174 0.99700 0.96532 1.06210 1.70992 1.41984 1.24626 1.24605 0.82637 0.76076 0.74896 0.71232 1.21847 1.20606 1.20343 0.92687 0.90616 0.91689 0.87523 0.88680 0.78515 0.84721 0.88003 0.85566 0.86045 0.89322 0.89256 0.89112 0.92667 0.91785 0.95271 0.97481 0.80545 0.94490 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.99 8.82 71.98 0.63 -2.36 16 2 C -0.09 -2.04 2.41 -10.71 -0.03 -2.06 16 3 H 0.07 1.70 8.14 -2.39 -0.02 1.69 16 4 C 0.11 2.12 5.43 86.36 0.47 2.58 16 5 N -0.59 -14.01 2.97 -822.72 -2.45 -16.45 16 6 C 0.60 15.40 7.68 86.69 0.67 16.07 16 7 O -0.55 -16.89 16.35 -3.97 -0.06 -16.96 16 8 C -0.09 -1.95 6.89 24.39 0.17 -1.78 16 9 C -0.14 -2.62 10.27 22.68 0.23 -2.39 16 10 C 0.05 0.87 6.94 43.55 0.30 1.17 16 11 C -0.11 -1.30 6.33 -11.54 -0.07 -1.37 16 12 C -0.15 -1.15 10.05 30.62 0.31 -0.84 16 13 C -0.16 -1.50 10.24 30.62 0.31 -1.18 16 14 N -0.36 -7.70 12.04 -48.87 -0.59 -8.29 16 15 O 0.12 2.43 7.95 65.76 0.52 2.95 16 16 C 0.12 3.01 6.44 86.36 0.56 3.57 16 17 C -0.12 -3.55 5.25 30.67 0.16 -3.39 16 18 C -0.08 -2.38 1.73 -10.77 -0.02 -2.40 16 19 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16 20 C 0.16 6.38 5.41 86.38 0.47 6.85 16 21 N -0.75 -37.92 5.32 -343.46 -1.83 -39.75 16 22 C -0.33 -18.98 9.99 84.03 0.84 -18.14 16 23 H 0.06 3.50 7.83 -2.91 -0.02 3.48 16 24 C -0.10 -6.13 5.50 84.86 0.47 -5.66 16 25 N -0.97 -60.98 13.70 21.65 0.30 -60.69 16 26 Si 1.13 52.30 29.92 68.60 2.05 54.35 16 27 H -0.29 -13.84 7.11 99.48 0.71 -13.14 16 28 H -0.28 -12.15 7.11 99.48 0.71 -11.44 16 29 H -0.28 -11.94 7.11 99.48 0.71 -11.23 16 30 H 0.05 1.31 6.29 -2.39 -0.02 1.30 16 31 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 32 H 0.06 1.28 8.14 -2.38 -0.02 1.26 16 33 H 0.11 1.99 4.28 -11.31 -0.05 1.94 16 34 H 0.10 1.66 8.14 -2.39 -0.02 1.64 16 35 H 0.20 2.91 7.62 -2.91 -0.02 2.89 16 36 H 0.14 1.36 8.14 -2.39 -0.02 1.35 16 37 H 0.10 0.79 7.33 -2.39 -0.02 0.77 16 38 H 0.13 0.48 8.14 -2.38 -0.02 0.46 16 39 H 0.12 0.72 8.14 -2.39 -0.02 0.70 16 40 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 41 H 0.09 2.40 7.00 -2.39 -0.02 2.39 16 42 H 0.09 2.04 8.14 -2.39 -0.02 2.02 16 43 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 44 H 0.06 2.24 7.15 -2.39 -0.02 2.22 16 45 H 0.03 1.15 6.14 -2.39 -0.01 1.14 16 46 H 0.01 0.30 8.14 -2.38 -0.02 0.28 16 47 H 0.36 18.63 5.68 -92.71 -0.53 18.11 16 48 H 0.24 15.17 6.77 -92.71 -0.63 14.54 16 Total: -1.00 -71.60 382.72 3.97 -67.62 By element: Atomic # 1 Polarization: 28.00 SS G_CDS: 0.56 Total: 28.55 kcal Atomic # 6 Polarization: -16.81 SS G_CDS: 5.47 Total: -11.34 kcal Atomic # 7 Polarization: -120.62 SS G_CDS: -4.56 Total: -125.18 kcal Atomic # 8 Polarization: -14.47 SS G_CDS: 0.46 Total: -14.01 kcal Atomic # 14 Polarization: 52.30 SS G_CDS: 2.05 Total: 54.35 kcal Total: -71.60 3.97 -67.62 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001185236529.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.034 kcal (2) G-P(sol) polarization free energy of solvation -71.596 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.438 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.973 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.623 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.411 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds