Wall clock time and date at job start Tue Mar 31 2020 17:34:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09000 * 109.52622 * 2 1 4 4 C 1.53188 * 109.49949 * 120.08034 * 2 1 3 5 5 N 1.46933 * 108.77448 * 65.31826 * 4 2 1 6 6 C 1.34774 * 120.62838 * 233.58783 * 5 4 2 7 7 O 1.21613 * 120.00382 * 7.18696 * 6 5 4 8 8 C 1.47424 * 120.00013 * 187.19340 * 6 5 4 9 9 C 1.36097 * 126.44899 * 187.18058 * 8 6 5 10 10 O 1.34254 * 106.94717 * 179.79417 * 9 8 6 11 11 C 1.34048 * 108.22796 * 0.36042 * 10 9 8 12 12 C 1.50706 * 125.38097 * 179.88951 * 11 10 9 13 13 C 1.53004 * 117.49459 * 8.32083 * 12 11 10 14 14 C 1.52995 * 59.99863 * 252.50950 * 13 12 11 15 15 N 1.29939 * 109.24425 * 359.63096 * 11 10 9 16 16 C 1.46927 * 118.73981 * 53.85736 * 5 4 2 17 17 C 1.53627 * 108.54058 * 306.09632 * 16 5 4 18 18 C 1.53034 * 109.24268 * 54.85671 * 17 16 5 19 19 H 1.09002 * 109.46229 * 58.53199 * 18 17 16 20 20 C 1.53007 * 109.44754 * 178.49504 * 18 17 16 21 21 N 1.46503 * 109.47111 * 295.06176 * 20 18 17 22 22 C 1.36929 * 119.99775 * 180.02562 * 21 20 18 23 23 H 1.08002 * 120.00402 * 0.02562 * 22 21 20 24 24 C 1.38819 * 119.99804 * 180.02562 * 22 21 20 25 25 N 1.31620 * 119.99936 * 359.97438 * 24 22 21 26 26 Si 1.86802 * 120.00103 * 180.02562 * 24 22 21 27 27 H 1.48493 * 109.47092 * 89.99578 * 26 24 22 28 28 H 1.48492 * 109.46999 * 210.00113 * 26 24 22 29 29 H 1.48506 * 109.46964 * 329.99673 * 26 24 22 30 30 H 1.08998 * 109.46630 * 299.91994 * 1 2 3 31 31 H 1.08998 * 109.47281 * 59.91910 * 1 2 3 32 32 H 1.08995 * 109.47039 * 179.97438 * 1 2 3 33 33 H 1.08997 * 109.59060 * 305.53111 * 4 2 1 34 34 H 1.08996 * 109.58715 * 185.10169 * 4 2 1 35 35 H 1.07996 * 126.52228 * 0.04333 * 9 8 6 36 36 H 1.09000 * 115.56140 * 154.00455 * 12 11 10 37 37 H 1.09006 * 117.49730 * 359.97438 * 13 12 11 38 38 H 1.09001 * 117.49899 * 145.02069 * 13 12 11 39 39 H 1.09006 * 117.49934 * 252.50944 * 14 13 12 40 40 H 1.08997 * 117.50070 * 107.49144 * 14 13 12 41 41 H 1.08994 * 109.58427 * 65.93331 * 16 5 4 42 42 H 1.09006 * 109.58410 * 186.35623 * 16 5 4 43 43 H 1.08998 * 109.63127 * 294.86142 * 17 16 5 44 44 H 1.09004 * 109.45465 * 174.74112 * 17 16 5 45 45 H 1.08996 * 109.46988 * 55.05948 * 20 18 17 46 46 H 1.08997 * 109.46775 * 175.05868 * 20 18 17 47 47 H 0.97006 * 119.99829 * 359.97438 * 21 20 18 48 48 H 0.96998 * 119.99772 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8944 1.0273 0.0000 4 6 2.0414 -0.7238 1.2495 5 7 1.6516 -2.1382 1.1695 6 6 0.9749 -2.7221 2.1782 7 8 0.5670 -2.0500 3.1061 8 6 0.7291 -4.1755 2.1569 9 6 -0.0485 -4.8769 3.0261 10 8 0.0000 -6.1631 2.6444 11 6 0.7961 -6.2518 1.5696 12 6 1.1226 -7.5224 0.8279 13 6 0.3491 -8.7846 1.2146 14 6 1.8198 -8.6375 1.6098 15 7 1.2374 -5.0682 1.2647 16 6 2.0189 -2.9055 -0.0284 17 6 1.5030 -2.1557 -1.2660 18 6 2.0408 -0.7231 -1.2484 19 1 3.1305 -0.7444 -1.2354 20 6 1.5603 0.0169 -2.4985 21 7 2.1463 -0.6041 -3.6890 22 6 1.8579 -0.1079 -4.9322 23 1 1.1987 0.7414 -5.0351 24 6 2.4127 -0.6966 -6.0603 25 7 3.2164 -1.7314 -5.9348 26 14 2.0198 -0.0194 -7.7563 27 1 3.0144 1.0231 -8.1156 28 1 2.0731 -1.1189 -8.7529 29 1 0.6594 0.5761 -7.7486 30 1 -0.3632 0.5126 0.8907 31 1 -0.3634 0.5151 -0.8892 32 1 -0.3633 -1.0276 -0.0005 33 1 1.6008 -0.2731 2.1389 34 1 3.1275 -0.6463 1.2979 35 1 -0.6026 -4.4747 3.8613 36 1 1.3920 -7.3988 -0.2210 37 1 -0.3956 -8.6960 2.0057 38 1 0.1098 -9.4915 0.4201 39 1 2.5481 -9.2475 1.0753 40 1 2.0424 -8.4520 2.6606 41 1 3.1033 -3.0023 -0.0821 42 1 1.5635 -3.8948 0.0175 43 1 0.4132 -2.1355 -1.2540 44 1 1.8475 -2.6626 -2.1675 45 1 0.4733 -0.0380 -2.5578 46 1 1.8690 1.0608 -2.4438 47 1 2.7392 -1.3662 -3.5964 48 1 3.6038 -2.1429 -6.7231 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001185260212.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:34:14 Heat of formation + Delta-G solvation = 34.482532 kcal Electronic energy + Delta-G solvation = -29122.515247 eV Core-core repulsion = 25180.701360 eV Total energy + Delta-G solvation = -3941.813886 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -43.76286 -40.22975 -38.03173 -37.60344 -35.37777 -34.77127 -33.19160 -31.65242 -30.54819 -30.22682 -27.06521 -26.86109 -24.68684 -24.27167 -23.28817 -22.87242 -22.86610 -21.67225 -21.06069 -19.71445 -18.46894 -17.72952 -17.24924 -17.11966 -16.78844 -16.08156 -15.88182 -15.33601 -15.04179 -14.86950 -14.40738 -13.98838 -13.85521 -13.69459 -13.60234 -13.40752 -12.87171 -12.84076 -12.58646 -12.38167 -12.13448 -12.07031 -11.88652 -11.50073 -11.37566 -11.16290 -11.08584 -11.01511 -10.88493 -10.76537 -10.66889 -10.32178 -10.26000 -10.10053 -9.95392 -9.58755 -9.51244 -9.18849 -8.81732 -8.47960 -6.86014 -5.72920 -3.00443 0.84638 1.66667 2.20679 2.90473 3.13436 3.27095 3.45574 3.50725 3.51829 3.52280 4.22933 4.32516 4.38754 4.57437 4.62207 4.68676 4.96307 5.06312 5.10050 5.13482 5.17532 5.32003 5.34565 5.37985 5.44132 5.52238 5.55366 5.58593 5.60907 5.76123 5.77885 5.83007 5.89638 5.96656 6.11182 6.17912 6.28709 6.32822 6.43762 6.46640 6.58198 6.66050 6.76315 6.91010 7.02531 7.18655 7.45423 7.73706 8.06926 8.46602 9.57576 10.16968 10.51782 11.50129 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.011474 B = 0.003013 C = 0.002484 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2439.726322 B = 9290.255742 C =11270.556924 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.097 4.097 3 H 0.081 0.919 4 C 0.116 3.884 5 N -0.584 5.584 6 C 0.599 3.401 7 O -0.547 6.547 8 C -0.062 4.062 9 C 0.008 3.992 10 O -0.196 6.196 11 C 0.229 3.771 12 C -0.075 4.075 13 C -0.162 4.162 14 C -0.156 4.156 15 N -0.448 5.448 16 C 0.079 3.921 17 C -0.124 4.124 18 C -0.090 4.090 19 H 0.070 0.930 20 C 0.159 3.841 21 N -0.732 5.732 22 C -0.236 4.236 23 H 0.069 0.931 24 C -0.015 4.015 25 N -0.934 5.934 26 Si 0.906 3.094 27 H -0.291 1.291 28 H -0.292 1.292 29 H -0.283 1.283 30 H 0.048 0.952 31 H 0.061 0.939 32 H 0.054 0.946 33 H 0.090 0.910 34 H 0.068 0.932 35 H 0.231 0.769 36 H 0.152 0.848 37 H 0.103 0.897 38 H 0.111 0.889 39 H 0.113 0.887 40 H 0.100 0.900 41 H 0.065 0.935 42 H 0.132 0.868 43 H 0.063 0.937 44 H 0.085 0.915 45 H 0.021 0.979 46 H 0.016 0.984 47 H 0.383 0.617 48 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.850 -12.439 20.147 24.169 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.117 4.117 3 H 0.100 0.900 4 C -0.006 4.006 5 N -0.314 5.314 6 C 0.386 3.614 7 O -0.426 6.426 8 C -0.182 4.182 9 C -0.066 4.066 10 O -0.082 6.082 11 C 0.022 3.978 12 C -0.094 4.094 13 C -0.200 4.200 14 C -0.194 4.194 15 N -0.177 5.177 16 C -0.043 4.043 17 C -0.162 4.162 18 C -0.109 4.109 19 H 0.089 0.911 20 C 0.031 3.969 21 N -0.376 5.376 22 C -0.367 4.367 23 H 0.087 0.913 24 C -0.211 4.211 25 N -0.583 5.583 26 Si 0.737 3.263 27 H -0.218 1.218 28 H -0.218 1.218 29 H -0.208 1.208 30 H 0.067 0.933 31 H 0.080 0.920 32 H 0.073 0.927 33 H 0.109 0.891 34 H 0.087 0.913 35 H 0.247 0.753 36 H 0.169 0.831 37 H 0.122 0.878 38 H 0.130 0.870 39 H 0.131 0.869 40 H 0.118 0.882 41 H 0.083 0.917 42 H 0.149 0.851 43 H 0.082 0.918 44 H 0.104 0.896 45 H 0.038 0.962 46 H 0.034 0.966 47 H 0.217 0.783 48 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -4.736 -11.845 19.984 23.709 hybrid contribution -0.327 0.194 -0.559 0.676 sum -5.063 -11.650 19.426 23.210 Atomic orbital electron populations 1.21849 0.94938 1.01927 1.01383 1.21458 0.96644 0.99377 0.94204 0.90033 1.21757 0.99448 0.80002 0.99420 1.47899 1.53980 1.11503 1.18055 1.16781 0.78200 0.83950 0.82446 1.90789 1.52326 1.63464 1.35979 1.21833 1.03718 0.95813 0.96802 1.25231 1.00947 0.79517 1.00870 1.84339 1.54680 1.29183 1.39984 1.25322 0.90898 0.95473 0.86137 1.20354 1.07805 0.82084 0.99189 1.23131 0.95246 0.97440 1.04164 1.23145 0.95986 0.99139 1.01164 1.70665 1.23809 0.98696 1.24579 1.22819 1.00908 0.97744 0.82792 1.22033 1.00972 0.95688 0.97539 1.21330 1.00207 0.95010 0.94341 0.91130 1.20712 0.95855 0.94567 0.85749 1.42388 1.56819 1.37552 1.00838 1.19234 1.22956 1.10650 0.83895 0.91337 1.24718 1.00215 0.98413 0.97742 1.69657 1.35849 1.24356 1.28453 0.86206 0.77774 0.77772 0.84563 1.21805 1.21812 1.20841 0.93324 0.91983 0.92705 0.89142 0.91327 0.75282 0.83086 0.87825 0.87019 0.86914 0.88169 0.91702 0.85062 0.91801 0.89618 0.96160 0.96597 0.78274 0.93607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.03 8.38 37.16 0.31 -1.72 16 2 C -0.10 -1.36 2.72 -90.50 -0.25 -1.60 16 3 H 0.08 1.07 8.14 -51.93 -0.42 0.64 16 4 C 0.12 1.55 5.84 -3.71 -0.02 1.53 16 5 N -0.58 -8.32 2.40 -173.77 -0.42 -8.73 16 6 C 0.60 8.83 7.67 -12.52 -0.10 8.73 16 7 O -0.55 -8.96 16.32 5.27 0.09 -8.87 16 8 C -0.06 -0.80 6.67 -83.02 -0.55 -1.36 16 9 C 0.01 0.08 11.95 29.96 0.36 0.44 16 10 O -0.20 -1.93 10.39 6.53 0.07 -1.86 16 11 C 0.23 2.38 7.80 -13.08 -0.10 2.28 16 12 C -0.08 -0.56 6.33 -91.77 -0.58 -1.14 16 13 C -0.16 -0.86 10.16 -26.73 -0.27 -1.13 16 14 C -0.16 -0.85 10.23 -26.74 -0.27 -1.12 16 15 N -0.45 -5.65 7.83 -7.65 -0.06 -5.71 16 16 C 0.08 1.14 6.13 -3.48 -0.02 1.12 16 17 C -0.12 -2.02 4.92 -26.39 -0.13 -2.15 16 18 C -0.09 -1.49 1.96 -90.58 -0.18 -1.66 16 19 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 20 C 0.16 3.24 5.19 -4.04 -0.02 3.22 16 21 N -0.73 -18.63 5.32 -59.91 -0.32 -18.95 16 22 C -0.24 -6.69 9.99 -15.06 -0.15 -6.84 16 23 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 24 C -0.02 -0.44 5.50 -17.43 -0.10 -0.54 16 25 N -0.93 -28.28 13.06 55.49 0.72 -27.55 16 26 Si 0.91 22.62 29.55 -169.99 -5.02 17.59 16 27 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 28 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 29 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 30 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 31 H 0.06 0.90 6.59 -51.93 -0.34 0.56 16 32 H 0.05 0.83 5.97 -51.93 -0.31 0.52 16 33 H 0.09 1.22 7.00 -51.93 -0.36 0.86 16 34 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 35 H 0.23 1.61 8.06 -52.49 -0.42 1.19 16 36 H 0.15 1.03 8.14 -51.93 -0.42 0.61 16 37 H 0.10 0.56 7.94 -51.93 -0.41 0.15 16 38 H 0.11 0.43 8.14 -51.93 -0.42 0.00 16 39 H 0.11 0.45 8.14 -51.93 -0.42 0.03 16 40 H 0.10 0.57 8.14 -51.93 -0.42 0.14 16 41 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 42 H 0.13 1.90 4.11 -60.17 -0.25 1.65 16 43 H 0.06 1.07 6.33 -51.93 -0.33 0.74 16 44 H 0.09 1.58 7.15 -51.93 -0.37 1.21 16 45 H 0.02 0.43 6.74 -51.93 -0.35 0.08 16 46 H 0.02 0.34 8.14 -51.93 -0.42 -0.09 16 47 H 0.38 10.17 6.84 -40.82 -0.28 9.89 16 48 H 0.25 7.44 8.31 -40.82 -0.34 7.10 16 LS Contribution 381.93 15.07 5.76 5.76 Total: -1.00 -33.33 381.93 -8.46 -41.79 By element: Atomic # 1 Polarization: 15.68 SS G_CDS: -7.20 Total: 8.48 kcal Atomic # 6 Polarization: 0.13 SS G_CDS: -2.07 Total: -1.94 kcal Atomic # 7 Polarization: -60.87 SS G_CDS: -0.07 Total: -60.95 kcal Atomic # 8 Polarization: -10.89 SS G_CDS: 0.15 Total: -10.73 kcal Atomic # 14 Polarization: 22.62 SS G_CDS: -5.02 Total: 17.59 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -33.33 -8.46 -41.79 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001185260212.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.273 kcal (2) G-P(sol) polarization free energy of solvation -33.332 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.941 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.791 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.483 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds