Wall clock time and date at job start Tue Mar 31 2020 17:34:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09000 * 109.52622 * 2 1 4 4 C 1.53188 * 109.49949 * 120.08034 * 2 1 3 5 5 N 1.46933 * 108.77448 * 65.31826 * 4 2 1 6 6 C 1.34774 * 120.62838 * 233.58783 * 5 4 2 7 7 O 1.21613 * 120.00382 * 7.18696 * 6 5 4 8 8 C 1.47424 * 120.00013 * 187.19340 * 6 5 4 9 9 C 1.36097 * 126.44899 * 187.18058 * 8 6 5 10 10 O 1.34254 * 106.94717 * 179.79417 * 9 8 6 11 11 C 1.34048 * 108.22796 * 0.36042 * 10 9 8 12 12 C 1.50706 * 125.38097 * 179.88951 * 11 10 9 13 13 C 1.53004 * 117.49459 * 8.32083 * 12 11 10 14 14 C 1.52995 * 59.99863 * 252.50950 * 13 12 11 15 15 N 1.29939 * 109.24425 * 359.63096 * 11 10 9 16 16 C 1.46927 * 118.73981 * 53.85736 * 5 4 2 17 17 C 1.53627 * 108.54058 * 306.09632 * 16 5 4 18 18 C 1.53034 * 109.24268 * 54.85671 * 17 16 5 19 19 H 1.09002 * 109.46229 * 58.53199 * 18 17 16 20 20 C 1.53007 * 109.44754 * 178.49504 * 18 17 16 21 21 N 1.46503 * 109.47111 * 295.06176 * 20 18 17 22 22 C 1.36929 * 119.99775 * 180.02562 * 21 20 18 23 23 H 1.08002 * 120.00402 * 0.02562 * 22 21 20 24 24 C 1.38819 * 119.99804 * 180.02562 * 22 21 20 25 25 N 1.31620 * 119.99936 * 359.97438 * 24 22 21 26 26 Si 1.86802 * 120.00103 * 180.02562 * 24 22 21 27 27 H 1.48493 * 109.47092 * 89.99578 * 26 24 22 28 28 H 1.48492 * 109.46999 * 210.00113 * 26 24 22 29 29 H 1.48506 * 109.46964 * 329.99673 * 26 24 22 30 30 H 1.08998 * 109.46630 * 299.91994 * 1 2 3 31 31 H 1.08998 * 109.47281 * 59.91910 * 1 2 3 32 32 H 1.08995 * 109.47039 * 179.97438 * 1 2 3 33 33 H 1.08997 * 109.59060 * 305.53111 * 4 2 1 34 34 H 1.08996 * 109.58715 * 185.10169 * 4 2 1 35 35 H 1.07996 * 126.52228 * 0.04333 * 9 8 6 36 36 H 1.09000 * 115.56140 * 154.00455 * 12 11 10 37 37 H 1.09006 * 117.49730 * 359.97438 * 13 12 11 38 38 H 1.09001 * 117.49899 * 145.02069 * 13 12 11 39 39 H 1.09006 * 117.49934 * 252.50944 * 14 13 12 40 40 H 1.08997 * 117.50070 * 107.49144 * 14 13 12 41 41 H 1.08994 * 109.58427 * 65.93331 * 16 5 4 42 42 H 1.09006 * 109.58410 * 186.35623 * 16 5 4 43 43 H 1.08998 * 109.63127 * 294.86142 * 17 16 5 44 44 H 1.09004 * 109.45465 * 174.74112 * 17 16 5 45 45 H 1.08996 * 109.46988 * 55.05948 * 20 18 17 46 46 H 1.08997 * 109.46775 * 175.05868 * 20 18 17 47 47 H 0.97006 * 119.99829 * 359.97438 * 21 20 18 48 48 H 0.96998 * 119.99772 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8944 1.0273 0.0000 4 6 2.0414 -0.7238 1.2495 5 7 1.6516 -2.1382 1.1695 6 6 0.9749 -2.7221 2.1782 7 8 0.5670 -2.0500 3.1061 8 6 0.7291 -4.1755 2.1569 9 6 -0.0485 -4.8769 3.0261 10 8 0.0000 -6.1631 2.6444 11 6 0.7961 -6.2518 1.5696 12 6 1.1226 -7.5224 0.8279 13 6 0.3491 -8.7846 1.2146 14 6 1.8198 -8.6375 1.6098 15 7 1.2374 -5.0682 1.2647 16 6 2.0189 -2.9055 -0.0284 17 6 1.5030 -2.1557 -1.2660 18 6 2.0408 -0.7231 -1.2484 19 1 3.1305 -0.7444 -1.2354 20 6 1.5603 0.0169 -2.4985 21 7 2.1463 -0.6041 -3.6890 22 6 1.8579 -0.1079 -4.9322 23 1 1.1987 0.7414 -5.0351 24 6 2.4127 -0.6966 -6.0603 25 7 3.2164 -1.7314 -5.9348 26 14 2.0198 -0.0194 -7.7563 27 1 3.0144 1.0231 -8.1156 28 1 2.0731 -1.1189 -8.7529 29 1 0.6594 0.5761 -7.7486 30 1 -0.3632 0.5126 0.8907 31 1 -0.3634 0.5151 -0.8892 32 1 -0.3633 -1.0276 -0.0005 33 1 1.6008 -0.2731 2.1389 34 1 3.1275 -0.6463 1.2979 35 1 -0.6026 -4.4747 3.8613 36 1 1.3920 -7.3988 -0.2210 37 1 -0.3956 -8.6960 2.0057 38 1 0.1098 -9.4915 0.4201 39 1 2.5481 -9.2475 1.0753 40 1 2.0424 -8.4520 2.6606 41 1 3.1033 -3.0023 -0.0821 42 1 1.5635 -3.8948 0.0175 43 1 0.4132 -2.1355 -1.2540 44 1 1.8475 -2.6626 -2.1675 45 1 0.4733 -0.0380 -2.5578 46 1 1.8690 1.0608 -2.4438 47 1 2.7392 -1.3662 -3.5964 48 1 3.6038 -2.1429 -6.7231 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001185260212.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:34:14 Heat of formation + Delta-G solvation = 13.609339 kcal Electronic energy + Delta-G solvation = -29123.420376 eV Core-core repulsion = 25180.701360 eV Total energy + Delta-G solvation = -3942.719016 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -44.58649 -41.39966 -39.27794 -38.11714 -36.63156 -36.12580 -34.68770 -33.18513 -31.95364 -31.38740 -28.50158 -28.15500 -25.81436 -25.32113 -24.73690 -24.13075 -23.30925 -22.87866 -22.19681 -20.70390 -19.73142 -19.12152 -18.57787 -18.00073 -17.89785 -16.98769 -16.80983 -16.69231 -16.37548 -15.87786 -15.61662 -15.49849 -15.35218 -14.98403 -14.83689 -14.56221 -14.39132 -14.06885 -13.69668 -13.56574 -13.38621 -12.98130 -12.86816 -12.73747 -12.68873 -12.51212 -12.43248 -12.21686 -12.07774 -11.91320 -11.83831 -11.78969 -11.57317 -11.52835 -11.45159 -11.24570 -10.93179 -10.64415 -10.02254 -9.62246 -8.96518 -7.93605 -5.21691 0.00117 0.79424 1.45406 1.47252 1.48873 1.57255 1.86032 2.11378 2.56733 2.60030 2.90762 3.38617 3.39572 3.69099 3.72272 3.77443 3.80523 3.83955 3.97343 4.08257 4.14306 4.24771 4.31412 4.40062 4.42174 4.45977 4.59296 4.64128 4.69683 4.74271 4.76673 4.77560 4.82397 4.96213 4.96635 5.02901 5.07303 5.16784 5.17770 5.21040 5.21105 5.25393 5.37985 5.49430 5.53258 5.65537 6.21847 6.28988 6.43896 6.96253 7.35278 8.11791 8.36068 9.29870 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.011474 B = 0.003013 C = 0.002484 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2439.726322 B = 9290.255742 C =11270.556924 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.089 4.089 3 H 0.097 0.903 4 C 0.117 3.883 5 N -0.586 5.586 6 C 0.598 3.402 7 O -0.567 6.567 8 C -0.098 4.098 9 C 0.030 3.970 10 O -0.191 6.191 11 C 0.233 3.767 12 C -0.100 4.100 13 C -0.148 4.148 14 C -0.146 4.146 15 N -0.476 5.476 16 C 0.091 3.909 17 C -0.115 4.115 18 C -0.079 4.079 19 H 0.066 0.934 20 C 0.160 3.840 21 N -0.743 5.743 22 C -0.246 4.246 23 H 0.072 0.928 24 C -0.074 4.074 25 N -0.967 5.967 26 Si 0.972 3.028 27 H -0.287 1.287 28 H -0.294 1.294 29 H -0.272 1.272 30 H 0.061 0.939 31 H 0.054 0.946 32 H 0.041 0.959 33 H 0.094 0.906 34 H 0.081 0.919 35 H 0.260 0.740 36 H 0.153 0.847 37 H 0.103 0.897 38 H 0.129 0.871 39 H 0.129 0.871 40 H 0.098 0.902 41 H 0.065 0.935 42 H 0.135 0.865 43 H 0.056 0.944 44 H 0.059 0.941 45 H 0.018 0.982 46 H 0.018 0.982 47 H 0.375 0.625 48 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.472 -12.936 21.087 25.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.109 4.109 3 H 0.115 0.885 4 C -0.005 4.005 5 N -0.316 5.316 6 C 0.387 3.613 7 O -0.448 6.448 8 C -0.217 4.217 9 C -0.044 4.044 10 O -0.077 6.077 11 C 0.025 3.975 12 C -0.119 4.119 13 C -0.186 4.186 14 C -0.184 4.184 15 N -0.206 5.206 16 C -0.031 4.031 17 C -0.153 4.153 18 C -0.098 4.098 19 H 0.084 0.916 20 C 0.034 3.966 21 N -0.386 5.386 22 C -0.377 4.377 23 H 0.090 0.910 24 C -0.266 4.266 25 N -0.618 5.618 26 Si 0.801 3.199 27 H -0.214 1.214 28 H -0.220 1.220 29 H -0.197 1.197 30 H 0.080 0.920 31 H 0.073 0.927 32 H 0.060 0.940 33 H 0.112 0.888 34 H 0.100 0.900 35 H 0.276 0.724 36 H 0.170 0.830 37 H 0.122 0.878 38 H 0.147 0.853 39 H 0.147 0.853 40 H 0.116 0.884 41 H 0.084 0.916 42 H 0.152 0.848 43 H 0.075 0.925 44 H 0.078 0.922 45 H 0.036 0.964 46 H 0.036 0.964 47 H 0.207 0.793 48 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -5.373 -12.314 20.945 24.884 hybrid contribution -0.173 0.309 -0.790 0.866 sum -5.547 -12.005 20.155 24.106 Atomic orbital electron populations 1.21785 0.94930 1.01144 1.01671 1.21412 0.96514 0.99926 0.93027 0.88474 1.21799 1.00247 0.79521 0.98902 1.47924 1.54006 1.11821 1.17877 1.16999 0.77590 0.84715 0.82025 1.90763 1.53226 1.64218 1.36608 1.21755 1.06035 0.95264 0.98600 1.25767 0.99222 0.79169 1.00260 1.84378 1.54453 1.28992 1.39869 1.25880 0.89916 0.95804 0.85864 1.20566 1.10308 0.81745 0.99286 1.23238 0.95109 0.95854 1.04361 1.23247 0.96631 0.97637 1.00907 1.70537 1.25064 0.99564 1.25407 1.22665 1.00791 0.97660 0.82006 1.21880 1.00352 0.95611 0.97441 1.21210 0.99845 0.94938 0.93832 0.91553 1.20830 0.95374 0.94709 0.85719 1.42574 1.56869 1.37485 1.01627 1.19612 1.22439 1.10479 0.85220 0.91035 1.25530 1.00615 0.99030 1.01436 1.69810 1.37115 1.25717 1.29148 0.85165 0.77948 0.76947 0.79854 1.21421 1.22016 1.19672 0.92005 0.92651 0.94005 0.88808 0.90049 0.72440 0.82986 0.87844 0.85275 0.85294 0.88382 0.91619 0.84774 0.92547 0.92228 0.96402 0.96439 0.79271 0.93991 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.79 8.38 71.98 0.60 -3.18 16 2 C -0.09 -2.40 2.72 -10.72 -0.03 -2.43 16 3 H 0.10 2.35 8.14 -2.39 -0.02 2.34 16 4 C 0.12 2.99 5.84 86.36 0.50 3.49 16 5 N -0.59 -16.45 2.40 -821.93 -1.98 -18.43 16 6 C 0.60 17.33 7.67 86.66 0.67 18.00 16 7 O -0.57 -18.14 16.32 -4.07 -0.07 -18.21 16 8 C -0.10 -2.49 6.67 40.41 0.27 -2.22 16 9 C 0.03 0.56 11.95 67.32 0.80 1.37 16 10 O -0.19 -3.50 10.39 0.43 0.00 -3.49 16 11 C 0.23 4.68 7.80 88.39 0.69 5.37 16 12 C -0.10 -1.37 6.33 -11.54 -0.07 -1.44 16 13 C -0.15 -1.26 10.16 30.59 0.31 -0.95 16 14 C -0.15 -1.32 10.23 30.59 0.31 -1.01 16 15 N -0.48 -11.95 7.83 -293.02 -2.29 -14.24 16 16 C 0.09 2.65 6.13 86.51 0.53 3.18 16 17 C -0.11 -3.81 4.92 30.82 0.15 -3.66 16 18 C -0.08 -2.62 1.96 -10.77 -0.02 -2.64 16 19 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 20 C 0.16 6.56 5.19 86.38 0.45 7.01 16 21 N -0.74 -38.43 5.32 -343.44 -1.83 -40.25 16 22 C -0.25 -13.99 9.99 84.04 0.84 -13.15 16 23 H 0.07 3.95 7.83 -2.91 -0.02 3.92 16 24 C -0.07 -4.28 5.50 84.86 0.47 -3.82 16 25 N -0.97 -59.42 13.06 21.65 0.28 -59.13 16 26 Si 0.97 46.62 29.55 68.60 2.03 48.65 16 27 H -0.29 -13.53 7.11 99.48 0.71 -12.82 16 28 H -0.29 -14.08 7.11 99.48 0.71 -13.37 16 29 H -0.27 -12.41 7.11 99.48 0.71 -11.70 16 30 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 31 H 0.05 1.57 6.59 -2.39 -0.02 1.56 16 32 H 0.04 1.25 5.97 -2.39 -0.01 1.23 16 33 H 0.09 2.39 7.00 -2.39 -0.02 2.38 16 34 H 0.08 1.88 8.14 -2.39 -0.02 1.87 16 35 H 0.26 3.05 8.06 -2.91 -0.02 3.03 16 36 H 0.15 2.01 8.14 -2.39 -0.02 1.99 16 37 H 0.10 0.91 7.94 -2.38 -0.02 0.89 16 38 H 0.13 0.66 8.14 -2.39 -0.02 0.64 16 39 H 0.13 0.75 8.14 -2.38 -0.02 0.73 16 40 H 0.10 0.94 8.14 -2.39 -0.02 0.92 16 41 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 42 H 0.14 3.95 4.11 -18.65 -0.08 3.87 16 43 H 0.06 1.94 6.33 -2.39 -0.02 1.93 16 44 H 0.06 2.30 7.15 -2.38 -0.02 2.28 16 45 H 0.02 0.76 6.74 -2.39 -0.02 0.74 16 46 H 0.02 0.73 8.14 -2.39 -0.02 0.71 16 47 H 0.37 20.45 6.84 -92.70 -0.63 19.81 16 48 H 0.25 14.93 8.31 -92.71 -0.77 14.16 16 Total: -1.00 -71.39 381.93 2.91 -68.48 By element: Atomic # 1 Polarization: 32.43 SS G_CDS: 0.28 Total: 32.72 kcal Atomic # 6 Polarization: -2.56 SS G_CDS: 6.47 Total: 3.91 kcal Atomic # 7 Polarization: -126.24 SS G_CDS: -5.81 Total: -132.06 kcal Atomic # 8 Polarization: -21.64 SS G_CDS: -0.06 Total: -21.70 kcal Atomic # 14 Polarization: 46.62 SS G_CDS: 2.03 Total: 48.65 kcal Total: -71.39 2.91 -68.48 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001185260212.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.088 kcal (2) G-P(sol) polarization free energy of solvation -71.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.701 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.908 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.479 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.609 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds