Wall clock time and date at job start Tue Mar 31 2020 17:34:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 109.52280 * 2 1 4 4 C 1.53199 * 109.49863 * 120.08179 * 2 1 3 5 5 N 1.46923 * 108.77367 * 174.58308 * 4 2 1 6 6 C 1.34772 * 120.62553 * 126.36851 * 5 4 2 7 7 O 1.21615 * 119.99869 * 173.94127 * 6 5 4 8 8 C 1.47420 * 120.00553 * 353.94374 * 6 5 4 9 9 C 1.36091 * 126.45309 * 173.11860 * 8 6 5 10 10 O 1.34257 * 106.95036 * 179.84243 * 9 8 6 11 11 C 1.34050 * 108.22598 * 0.42579 * 10 9 8 12 12 C 1.50699 * 125.37904 * 179.69935 * 11 10 9 13 13 C 1.53002 * 117.49796 * 8.65344 * 12 11 10 14 14 C 1.52994 * 60.00278 * 252.51308 * 13 12 11 15 15 N 1.29935 * 109.24256 * 359.72975 * 11 10 9 16 16 C 1.46923 * 118.74062 * 306.38845 * 5 4 2 17 17 C 1.53192 * 108.77674 * 53.61450 * 16 5 4 18 18 C 1.53039 * 109.49517 * 239.91829 * 2 1 3 19 19 H 1.08997 * 109.45192 * 298.69643 * 18 2 1 20 20 C 1.53002 * 109.46234 * 58.66591 * 18 2 1 21 21 N 1.46500 * 109.46972 * 185.06954 * 20 18 2 22 22 C 1.36941 * 119.99806 * 180.27683 * 21 20 18 23 23 H 1.08007 * 119.99448 * 359.71440 * 22 21 20 24 24 C 1.38809 * 120.00449 * 179.72316 * 22 21 20 25 25 N 1.31617 * 120.00432 * 179.97438 * 24 22 21 26 26 Si 1.86805 * 119.99717 * 359.97438 * 24 22 21 27 27 H 1.48497 * 109.47095 * 89.99898 * 26 24 22 28 28 H 1.48499 * 109.47123 * 210.00295 * 26 24 22 29 29 H 1.48500 * 109.46825 * 330.00168 * 26 24 22 30 30 H 1.08997 * 109.47414 * 180.08333 * 1 2 3 31 31 H 1.09001 * 109.46784 * 300.08482 * 1 2 3 32 32 H 1.09003 * 109.46988 * 60.07882 * 1 2 3 33 33 H 1.08998 * 109.58525 * 54.79450 * 4 2 1 34 34 H 1.08998 * 109.69949 * 294.44301 * 4 2 1 35 35 H 1.07999 * 126.52263 * 0.02562 * 9 8 6 36 36 H 1.08992 * 115.55497 * 154.36749 * 12 11 10 37 37 H 1.08998 * 117.49949 * 0.02562 * 13 12 11 38 38 H 1.08999 * 117.49537 * 145.02142 * 13 12 11 39 39 H 1.08993 * 117.50375 * 252.50738 * 14 13 12 40 40 H 1.09001 * 117.49395 * 107.48978 * 14 13 12 41 41 H 1.08996 * 109.58818 * 293.82381 * 16 5 4 42 42 H 1.09003 * 109.70330 * 173.46702 * 16 5 4 43 43 H 1.08997 * 109.49948 * 185.41191 * 17 16 5 44 44 H 1.08999 * 109.52699 * 65.32641 * 17 16 5 45 45 H 1.08994 * 109.47241 * 65.06473 * 20 18 2 46 46 H 1.09005 * 109.46472 * 305.06589 * 20 18 2 47 47 H 0.96992 * 120.00155 * 359.97438 * 21 20 18 48 48 H 0.96999 * 120.00096 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0414 -0.7239 1.2496 5 7 3.5046 -0.8292 1.1695 6 6 4.2811 -0.3857 2.1778 7 8 5.4818 -0.5772 2.1502 8 6 3.6752 0.3316 3.3143 9 6 4.3072 0.7189 4.4557 10 8 3.3930 1.3403 5.2177 11 6 2.2230 1.3269 4.5636 12 6 0.9322 1.9154 5.0723 13 6 0.9943 2.7581 6.3478 14 6 0.3715 1.3611 6.3836 15 7 2.3774 0.7259 3.4220 16 6 4.1052 -1.4268 -0.0308 17 6 3.5709 -0.6951 -1.2661 18 6 2.0408 -0.7231 -1.2483 19 1 1.6967 -1.7573 -1.2351 20 6 1.5037 -0.0232 -2.4984 21 7 1.8917 -0.7841 -3.6887 22 6 1.5253 -0.3435 -4.9325 23 1 0.9463 0.5625 -5.0355 24 6 1.8977 -1.0612 -6.0607 25 7 1.5451 -0.6380 -7.2561 26 14 2.8994 -2.6279 -5.8825 27 1 1.9831 -3.7890 -5.7507 28 1 3.7561 -2.8069 -7.0822 29 1 3.7554 -2.5331 -4.6727 30 1 -0.3634 -1.0276 0.0015 31 1 -0.3633 0.5152 0.8892 32 1 -0.3633 0.5126 -0.8907 33 1 1.6053 -1.7216 1.2981 34 1 1.7637 -0.1601 2.1402 35 1 5.3469 0.5595 4.7004 36 1 0.2173 2.2140 4.3057 37 1 1.9688 2.8872 6.8188 38 1 0.3203 3.6116 6.4203 39 1 -0.7122 1.2954 6.4797 40 1 0.9363 0.5709 6.8783 41 1 3.8375 -2.4819 -0.0868 42 1 5.1898 -1.3269 0.0123 43 1 3.9334 -1.1898 -2.1671 44 1 3.9159 0.3387 -1.2547 45 1 1.9194 0.9825 -2.5586 46 1 0.4166 0.0355 -2.4431 47 1 2.4118 -1.5975 -3.5961 48 1 1.8057 -1.1394 -8.0445 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001185260216.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:34:20 Heat of formation + Delta-G solvation = 37.367721 kcal Electronic energy + Delta-G solvation = -29058.023041 eV Core-core repulsion = 25116.334266 eV Total energy + Delta-G solvation = -3941.688775 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -43.89371 -40.20399 -38.11902 -37.73569 -35.51850 -34.93600 -33.34273 -32.08579 -30.93673 -30.46203 -27.33140 -26.54540 -24.85916 -24.72615 -23.24898 -23.01395 -22.33465 -21.33841 -21.08142 -19.96469 -19.31790 -17.91112 -17.58503 -17.31926 -16.96761 -16.21538 -16.06601 -15.25414 -15.18918 -14.77590 -14.51134 -14.19536 -14.03186 -13.87037 -13.43836 -13.36839 -13.00446 -12.86296 -12.79602 -12.34909 -12.32207 -12.19230 -12.03779 -11.82505 -11.60726 -11.34352 -11.26950 -11.21322 -10.90638 -10.83535 -10.75745 -10.43610 -10.35279 -10.20925 -10.00800 -9.63240 -9.47032 -9.31951 -8.84474 -8.58841 -7.16883 -5.73163 -3.07728 0.73743 1.53134 2.08329 2.79285 3.00848 3.19951 3.35720 3.39657 3.42304 3.47693 4.09774 4.20062 4.25934 4.46011 4.56108 4.62376 4.85223 4.97618 5.00998 5.03549 5.04988 5.16644 5.21620 5.22566 5.33293 5.40166 5.42240 5.46420 5.50905 5.57617 5.64496 5.69998 5.83578 5.88141 5.95595 6.01939 6.15960 6.23008 6.29650 6.34526 6.43657 6.49530 6.68160 6.80228 6.89549 7.06129 7.35693 7.97455 8.04019 8.46248 9.25886 9.98459 10.18911 11.45535 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.019885 B = 0.002659 C = 0.002422 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1407.725313 B =10527.735737 C =11560.049861 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.090 4.090 3 H 0.072 0.928 4 C 0.069 3.931 5 N -0.587 5.587 6 C 0.598 3.402 7 O -0.543 6.543 8 C -0.061 4.061 9 C 0.011 3.989 10 O -0.194 6.194 11 C 0.231 3.769 12 C -0.076 4.076 13 C -0.162 4.162 14 C -0.156 4.156 15 N -0.449 5.449 16 C 0.110 3.890 17 C -0.126 4.126 18 C -0.095 4.095 19 H 0.070 0.930 20 C 0.161 3.839 21 N -0.756 5.756 22 C -0.240 4.240 23 H 0.089 0.911 24 C 0.002 3.998 25 N -0.936 5.936 26 Si 0.884 3.116 27 H -0.285 1.285 28 H -0.291 1.291 29 H -0.277 1.277 30 H 0.054 0.946 31 H 0.052 0.948 32 H 0.067 0.933 33 H 0.059 0.941 34 H 0.149 0.851 35 H 0.232 0.768 36 H 0.151 0.849 37 H 0.104 0.896 38 H 0.112 0.888 39 H 0.113 0.887 40 H 0.101 0.899 41 H 0.068 0.932 42 H 0.090 0.910 43 H 0.082 0.918 44 H 0.066 0.934 45 H 0.024 0.976 46 H 0.033 0.967 47 H 0.360 0.640 48 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.707 4.074 32.434 32.696 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.110 4.110 3 H 0.090 0.910 4 C -0.053 4.053 5 N -0.317 5.317 6 C 0.385 3.615 7 O -0.422 6.422 8 C -0.181 4.181 9 C -0.063 4.063 10 O -0.081 6.081 11 C 0.023 3.977 12 C -0.095 4.095 13 C -0.199 4.199 14 C -0.194 4.194 15 N -0.178 5.178 16 C -0.012 4.012 17 C -0.164 4.164 18 C -0.114 4.114 19 H 0.088 0.912 20 C 0.034 3.966 21 N -0.401 5.401 22 C -0.370 4.370 23 H 0.107 0.893 24 C -0.193 4.193 25 N -0.584 5.584 26 Si 0.715 3.285 27 H -0.211 1.211 28 H -0.218 1.218 29 H -0.203 1.203 30 H 0.073 0.927 31 H 0.072 0.928 32 H 0.086 0.914 33 H 0.077 0.923 34 H 0.165 0.835 35 H 0.248 0.752 36 H 0.168 0.832 37 H 0.122 0.878 38 H 0.130 0.870 39 H 0.131 0.869 40 H 0.119 0.881 41 H 0.087 0.913 42 H 0.109 0.891 43 H 0.100 0.900 44 H 0.085 0.915 45 H 0.042 0.958 46 H 0.050 0.950 47 H 0.192 0.808 48 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -0.641 4.018 31.785 32.045 hybrid contribution 1.314 -1.147 0.093 1.747 sum 0.673 2.870 31.878 32.014 Atomic orbital electron populations 1.21805 0.94389 1.01995 1.02042 1.21352 0.96047 0.99805 0.93778 0.90983 1.23040 0.77700 1.01777 1.02826 1.47917 1.07897 1.58619 1.17267 1.16806 0.85523 0.78278 0.80890 1.90810 1.13938 1.58829 1.78612 1.21828 0.90358 1.07682 0.98199 1.25259 0.95522 0.95624 0.89853 1.84348 1.18836 1.59854 1.45023 1.25336 0.86817 0.97948 0.87573 1.20348 0.90384 1.05484 0.93316 1.23133 1.03819 0.95241 0.97736 1.23156 1.01962 0.97511 0.96791 1.70345 1.16246 1.14177 1.17070 1.21767 0.99303 0.96775 0.83373 1.21949 0.96071 1.01417 0.96971 1.21440 0.94700 1.00191 0.95112 0.91173 1.20736 0.97152 0.94057 0.84620 1.42747 1.66222 1.28540 1.02627 1.19069 1.28177 1.07861 0.81931 0.89312 1.24670 1.00789 0.98750 0.95123 1.69701 1.51102 1.40638 0.96988 0.86550 0.80445 0.84697 0.76844 1.21142 1.21786 1.20330 0.92732 0.92843 0.91410 0.92294 0.83456 0.75171 0.83182 0.87763 0.87010 0.86887 0.88098 0.91349 0.89140 0.89952 0.91492 0.95828 0.94961 0.80750 0.93129 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.71 8.82 37.16 0.33 -1.39 16 2 C -0.09 -1.19 2.41 -90.50 -0.22 -1.41 16 3 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 4 C 0.07 0.86 5.61 -3.71 -0.02 0.84 16 5 N -0.59 -8.12 2.97 -174.04 -0.52 -8.64 16 6 C 0.60 8.55 7.68 -12.52 -0.10 8.45 16 7 O -0.54 -8.93 16.34 5.26 0.09 -8.85 16 8 C -0.06 -0.72 6.72 -83.02 -0.56 -1.28 16 9 C 0.01 0.10 11.95 29.96 0.36 0.46 16 10 O -0.19 -1.67 10.40 6.51 0.07 -1.60 16 11 C 0.23 2.02 7.80 -13.08 -0.10 1.92 16 12 C -0.08 -0.42 6.33 -91.77 -0.58 -1.00 16 13 C -0.16 -0.60 10.16 -26.73 -0.27 -0.87 16 14 C -0.16 -0.59 10.23 -26.73 -0.27 -0.87 16 15 N -0.45 -4.90 7.74 -7.65 -0.06 -4.96 16 16 C 0.11 1.55 6.41 -3.71 -0.02 1.53 16 17 C -0.13 -1.97 5.25 -26.61 -0.14 -2.11 16 18 C -0.10 -1.50 1.73 -90.57 -0.16 -1.66 16 19 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 20 C 0.16 3.16 5.41 -4.04 -0.02 3.14 16 21 N -0.76 -18.21 5.12 -59.91 -0.31 -18.52 16 22 C -0.24 -6.93 10.47 -15.06 -0.16 -7.09 16 23 H 0.09 2.74 8.06 -52.48 -0.42 2.32 16 24 C 0.00 0.06 5.50 -17.43 -0.10 -0.03 16 25 N -0.94 -29.88 13.97 55.49 0.78 -29.10 16 26 Si 0.88 22.49 27.74 -169.99 -4.71 17.77 16 27 H -0.28 -7.18 7.11 56.52 0.40 -6.78 16 28 H -0.29 -7.51 7.11 56.52 0.40 -7.11 16 29 H -0.28 -6.59 6.52 56.52 0.37 -6.22 16 30 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.07 0.88 6.29 -51.93 -0.33 0.55 16 33 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.15 1.77 3.67 -76.66 -0.28 1.48 16 35 H 0.23 1.43 8.06 -52.49 -0.42 1.01 16 36 H 0.15 0.69 8.14 -51.93 -0.42 0.26 16 37 H 0.10 0.43 7.94 -51.93 -0.41 0.01 16 38 H 0.11 0.25 8.14 -51.93 -0.42 -0.17 16 39 H 0.11 0.26 8.14 -51.93 -0.42 -0.16 16 40 H 0.10 0.42 8.14 -51.93 -0.42 0.00 16 41 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 42 H 0.09 1.32 7.05 -51.93 -0.37 0.96 16 43 H 0.08 1.41 7.15 -51.93 -0.37 1.04 16 44 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 45 H 0.02 0.49 8.14 -51.93 -0.42 0.06 16 46 H 0.03 0.64 6.14 -51.93 -0.32 0.32 16 47 H 0.36 8.44 4.71 -40.82 -0.19 8.25 16 48 H 0.26 7.86 8.31 -40.82 -0.34 7.52 16 LS Contribution 382.59 15.07 5.77 5.77 Total: -1.00 -34.85 382.59 -8.29 -43.14 By element: Atomic # 1 Polarization: 13.73 SS G_CDS: -7.36 Total: 6.38 kcal Atomic # 6 Polarization: 0.65 SS G_CDS: -2.03 Total: -1.38 kcal Atomic # 7 Polarization: -61.12 SS G_CDS: -0.11 Total: -61.23 kcal Atomic # 8 Polarization: -10.60 SS G_CDS: 0.15 Total: -10.45 kcal Atomic # 14 Polarization: 22.49 SS G_CDS: -4.71 Total: 17.77 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -34.85 -8.29 -43.14 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001185260216.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.506 kcal (2) G-P(sol) polarization free energy of solvation -34.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.659 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.138 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds