Wall clock time and date at job start Tue Mar 31 2020 17:34:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 109.52280 * 2 1 4 4 C 1.53199 * 109.49863 * 120.08179 * 2 1 3 5 5 N 1.46923 * 108.77367 * 174.58308 * 4 2 1 6 6 C 1.34772 * 120.62553 * 126.36851 * 5 4 2 7 7 O 1.21615 * 119.99869 * 173.94127 * 6 5 4 8 8 C 1.47420 * 120.00553 * 353.94374 * 6 5 4 9 9 C 1.36091 * 126.45309 * 173.11860 * 8 6 5 10 10 O 1.34257 * 106.95036 * 179.84243 * 9 8 6 11 11 C 1.34050 * 108.22598 * 0.42579 * 10 9 8 12 12 C 1.50699 * 125.37904 * 179.69935 * 11 10 9 13 13 C 1.53002 * 117.49796 * 8.65344 * 12 11 10 14 14 C 1.52994 * 60.00278 * 252.51308 * 13 12 11 15 15 N 1.29935 * 109.24256 * 359.72975 * 11 10 9 16 16 C 1.46923 * 118.74062 * 306.38845 * 5 4 2 17 17 C 1.53192 * 108.77674 * 53.61450 * 16 5 4 18 18 C 1.53039 * 109.49517 * 239.91829 * 2 1 3 19 19 H 1.08997 * 109.45192 * 298.69643 * 18 2 1 20 20 C 1.53002 * 109.46234 * 58.66591 * 18 2 1 21 21 N 1.46500 * 109.46972 * 185.06954 * 20 18 2 22 22 C 1.36941 * 119.99806 * 180.27683 * 21 20 18 23 23 H 1.08007 * 119.99448 * 359.71440 * 22 21 20 24 24 C 1.38809 * 120.00449 * 179.72316 * 22 21 20 25 25 N 1.31617 * 120.00432 * 179.97438 * 24 22 21 26 26 Si 1.86805 * 119.99717 * 359.97438 * 24 22 21 27 27 H 1.48497 * 109.47095 * 89.99898 * 26 24 22 28 28 H 1.48499 * 109.47123 * 210.00295 * 26 24 22 29 29 H 1.48500 * 109.46825 * 330.00168 * 26 24 22 30 30 H 1.08997 * 109.47414 * 180.08333 * 1 2 3 31 31 H 1.09001 * 109.46784 * 300.08482 * 1 2 3 32 32 H 1.09003 * 109.46988 * 60.07882 * 1 2 3 33 33 H 1.08998 * 109.58525 * 54.79450 * 4 2 1 34 34 H 1.08998 * 109.69949 * 294.44301 * 4 2 1 35 35 H 1.07999 * 126.52263 * 0.02562 * 9 8 6 36 36 H 1.08992 * 115.55497 * 154.36749 * 12 11 10 37 37 H 1.08998 * 117.49949 * 0.02562 * 13 12 11 38 38 H 1.08999 * 117.49537 * 145.02142 * 13 12 11 39 39 H 1.08993 * 117.50375 * 252.50738 * 14 13 12 40 40 H 1.09001 * 117.49395 * 107.48978 * 14 13 12 41 41 H 1.08996 * 109.58818 * 293.82381 * 16 5 4 42 42 H 1.09003 * 109.70330 * 173.46702 * 16 5 4 43 43 H 1.08997 * 109.49948 * 185.41191 * 17 16 5 44 44 H 1.08999 * 109.52699 * 65.32641 * 17 16 5 45 45 H 1.08994 * 109.47241 * 65.06473 * 20 18 2 46 46 H 1.09005 * 109.46472 * 305.06589 * 20 18 2 47 47 H 0.96992 * 120.00155 * 359.97438 * 21 20 18 48 48 H 0.96999 * 120.00096 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0414 -0.7239 1.2496 5 7 3.5046 -0.8292 1.1695 6 6 4.2811 -0.3857 2.1778 7 8 5.4818 -0.5772 2.1502 8 6 3.6752 0.3316 3.3143 9 6 4.3072 0.7189 4.4557 10 8 3.3930 1.3403 5.2177 11 6 2.2230 1.3269 4.5636 12 6 0.9322 1.9154 5.0723 13 6 0.9943 2.7581 6.3478 14 6 0.3715 1.3611 6.3836 15 7 2.3774 0.7259 3.4220 16 6 4.1052 -1.4268 -0.0308 17 6 3.5709 -0.6951 -1.2661 18 6 2.0408 -0.7231 -1.2483 19 1 1.6967 -1.7573 -1.2351 20 6 1.5037 -0.0232 -2.4984 21 7 1.8917 -0.7841 -3.6887 22 6 1.5253 -0.3435 -4.9325 23 1 0.9463 0.5625 -5.0355 24 6 1.8977 -1.0612 -6.0607 25 7 1.5451 -0.6380 -7.2561 26 14 2.8994 -2.6279 -5.8825 27 1 1.9831 -3.7890 -5.7507 28 1 3.7561 -2.8069 -7.0822 29 1 3.7554 -2.5331 -4.6727 30 1 -0.3634 -1.0276 0.0015 31 1 -0.3633 0.5152 0.8892 32 1 -0.3633 0.5126 -0.8907 33 1 1.6053 -1.7216 1.2981 34 1 1.7637 -0.1601 2.1402 35 1 5.3469 0.5595 4.7004 36 1 0.2173 2.2140 4.3057 37 1 1.9688 2.8872 6.8188 38 1 0.3203 3.6116 6.4203 39 1 -0.7122 1.2954 6.4797 40 1 0.9363 0.5709 6.8783 41 1 3.8375 -2.4819 -0.0868 42 1 5.1898 -1.3269 0.0123 43 1 3.9334 -1.1898 -2.1671 44 1 3.9159 0.3387 -1.2547 45 1 1.9194 0.9825 -2.5586 46 1 0.4166 0.0355 -2.4431 47 1 2.4118 -1.5975 -3.5961 48 1 1.8057 -1.1394 -8.0445 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001185260216.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:34:19 Heat of formation + Delta-G solvation = 14.111958 kcal Electronic energy + Delta-G solvation = -29059.031486 eV Core-core repulsion = 25116.334266 eV Total energy + Delta-G solvation = -3942.697221 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -44.60379 -41.30571 -39.32142 -38.10064 -36.80493 -36.08834 -34.81088 -33.55473 -32.60522 -31.34532 -28.83353 -27.58716 -26.01993 -25.30785 -24.84874 -23.43626 -23.18228 -22.81426 -22.00099 -21.13291 -20.28729 -19.63951 -18.70644 -18.10134 -17.77245 -17.13243 -16.71624 -16.67616 -16.32970 -15.95116 -15.73876 -15.59544 -15.15306 -15.04602 -14.74118 -14.56056 -14.48419 -14.12660 -13.85702 -13.46261 -13.36774 -13.15968 -13.09591 -12.86338 -12.68761 -12.67634 -12.41188 -12.23626 -12.02893 -11.92053 -11.79609 -11.76453 -11.61211 -11.56515 -11.45682 -11.40354 -10.94459 -10.57328 -10.03986 -9.67126 -9.28274 -8.03628 -5.36619 -0.01347 0.77505 1.36176 1.39895 1.44485 1.47125 1.82708 2.08102 2.47325 2.58915 2.91659 3.27507 3.38448 3.55889 3.69751 3.75411 3.78992 3.81540 3.98194 4.00042 4.05122 4.14450 4.26173 4.35634 4.39833 4.50779 4.57030 4.60774 4.65494 4.70013 4.77864 4.79916 4.81890 4.96376 4.98826 5.03442 5.07101 5.10253 5.17658 5.22244 5.23501 5.28741 5.41473 5.55838 5.68932 5.75163 6.19224 6.20625 6.43709 6.92322 7.07251 7.83638 8.03601 9.18110 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.019885 B = 0.002659 C = 0.002422 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1407.725313 B =10527.735737 C =11560.049861 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.082 4.082 3 H 0.060 0.940 4 C 0.073 3.927 5 N -0.591 5.591 6 C 0.595 3.405 7 O -0.573 6.573 8 C -0.094 4.094 9 C 0.031 3.969 10 O -0.191 6.191 11 C 0.237 3.763 12 C -0.096 4.096 13 C -0.152 4.152 14 C -0.147 4.147 15 N -0.470 5.470 16 C 0.115 3.885 17 C -0.121 4.121 18 C -0.085 4.085 19 H 0.077 0.923 20 C 0.160 3.840 21 N -0.756 5.756 22 C -0.233 4.233 23 H 0.054 0.946 24 C -0.065 4.065 25 N -0.985 5.985 26 Si 0.955 3.045 27 H -0.276 1.276 28 H -0.296 1.296 29 H -0.251 1.251 30 H 0.061 0.939 31 H 0.075 0.925 32 H 0.052 0.948 33 H 0.069 0.931 34 H 0.159 0.841 35 H 0.257 0.743 36 H 0.159 0.841 37 H 0.100 0.900 38 H 0.130 0.870 39 H 0.131 0.869 40 H 0.096 0.904 41 H 0.083 0.917 42 H 0.083 0.917 43 H 0.068 0.932 44 H 0.054 0.946 45 H 0.012 0.988 46 H 0.036 0.964 47 H 0.366 0.634 48 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.990 3.309 35.698 35.864 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.101 4.101 3 H 0.079 0.921 4 C -0.048 4.048 5 N -0.320 5.320 6 C 0.384 3.616 7 O -0.454 6.454 8 C -0.213 4.213 9 C -0.043 4.043 10 O -0.077 6.077 11 C 0.030 3.970 12 C -0.115 4.115 13 C -0.190 4.190 14 C -0.184 4.184 15 N -0.200 5.200 16 C -0.007 4.007 17 C -0.159 4.159 18 C -0.104 4.104 19 H 0.095 0.905 20 C 0.035 3.965 21 N -0.402 5.402 22 C -0.364 4.364 23 H 0.072 0.928 24 C -0.257 4.257 25 N -0.635 5.635 26 Si 0.781 3.219 27 H -0.202 1.202 28 H -0.223 1.223 29 H -0.176 1.176 30 H 0.080 0.920 31 H 0.094 0.906 32 H 0.071 0.929 33 H 0.087 0.913 34 H 0.175 0.825 35 H 0.273 0.727 36 H 0.177 0.823 37 H 0.118 0.882 38 H 0.148 0.852 39 H 0.149 0.851 40 H 0.115 0.885 41 H 0.101 0.899 42 H 0.102 0.898 43 H 0.087 0.913 44 H 0.073 0.927 45 H 0.030 0.970 46 H 0.054 0.946 47 H 0.199 0.801 48 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -0.943 3.259 35.101 35.264 hybrid contribution 1.332 -0.759 -0.843 1.749 sum 0.389 2.501 34.258 34.352 Atomic orbital electron populations 1.21767 0.93037 1.02584 1.02433 1.21273 0.97085 0.98879 0.92903 0.92126 1.23111 0.76860 1.02329 1.02524 1.48001 1.08463 1.58516 1.17056 1.17123 0.85242 0.77889 0.81396 1.90781 1.15103 1.60076 1.79438 1.21614 0.91400 1.09700 0.98560 1.25723 0.96284 0.93584 0.88724 1.84394 1.18864 1.59641 1.44792 1.25970 0.87550 0.96672 0.86847 1.20608 0.89340 1.07123 0.94425 1.23235 1.04043 0.95859 0.95817 1.23256 1.02956 0.97415 0.94820 1.70175 1.15937 1.15503 1.18340 1.21658 0.98901 0.97283 0.82885 1.21855 0.96010 1.00739 0.97300 1.21353 0.94602 1.00271 0.94185 0.90511 1.20875 0.97368 0.93472 0.84819 1.42736 1.66155 1.29058 1.02259 1.19038 1.26885 1.06470 0.84042 0.92771 1.25520 1.02699 1.02814 0.94624 1.69886 1.53102 1.42582 0.97967 0.85416 0.78975 0.79947 0.77516 1.20179 1.22281 1.17551 0.92028 0.90620 0.92855 0.91320 0.82493 0.72743 0.82306 0.88163 0.85218 0.85094 0.88548 0.89921 0.89830 0.91323 0.92749 0.97016 0.94626 0.80087 0.93337 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.06 8.82 71.98 0.63 -2.43 16 2 C -0.08 -2.05 2.41 -10.71 -0.03 -2.08 16 3 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 4 C 0.07 1.70 5.61 86.37 0.48 2.18 16 5 N -0.59 -15.74 2.97 -822.79 -2.45 -18.18 16 6 C 0.59 16.61 7.68 86.66 0.67 17.27 16 7 O -0.57 -18.67 16.34 -4.08 -0.07 -18.74 16 8 C -0.09 -2.13 6.72 40.41 0.27 -1.86 16 9 C 0.03 0.51 11.95 67.32 0.80 1.31 16 10 O -0.19 -2.89 10.40 0.39 0.00 -2.89 16 11 C 0.24 3.70 7.80 88.39 0.69 4.39 16 12 C -0.10 -0.83 6.33 -11.54 -0.07 -0.90 16 13 C -0.15 -0.71 10.16 30.59 0.31 -0.40 16 14 C -0.15 -0.70 10.23 30.59 0.31 -0.39 16 15 N -0.47 -9.55 7.74 -293.04 -2.27 -11.82 16 16 C 0.11 3.14 6.41 86.36 0.55 3.69 16 17 C -0.12 -3.71 5.25 30.67 0.16 -3.55 16 18 C -0.09 -2.59 1.73 -10.76 -0.02 -2.60 16 19 H 0.08 2.27 8.14 -2.39 -0.02 2.25 16 20 C 0.16 6.28 5.41 86.38 0.47 6.75 16 21 N -0.76 -36.25 5.12 -343.44 -1.76 -38.01 16 22 C -0.23 -13.70 10.47 84.03 0.88 -12.82 16 23 H 0.05 3.49 8.06 -2.91 -0.02 3.46 16 24 C -0.07 -3.94 5.50 84.86 0.47 -3.47 16 25 N -0.98 -64.42 13.97 21.65 0.30 -64.12 16 26 Si 0.95 46.36 27.74 68.60 1.90 48.26 16 27 H -0.28 -12.96 7.11 99.48 0.71 -12.26 16 28 H -0.30 -14.56 7.11 99.48 0.71 -13.86 16 29 H -0.25 -10.98 6.52 99.48 0.65 -10.33 16 30 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 31 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 32 H 0.05 1.32 6.29 -2.39 -0.02 1.30 16 33 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 34 H 0.16 3.48 3.67 -51.21 -0.19 3.29 16 35 H 0.26 2.63 8.06 -2.91 -0.02 2.61 16 36 H 0.16 1.06 8.14 -2.39 -0.02 1.04 16 37 H 0.10 0.57 7.94 -2.39 -0.02 0.56 16 38 H 0.13 0.15 8.14 -2.39 -0.02 0.13 16 39 H 0.13 0.17 8.14 -2.39 -0.02 0.15 16 40 H 0.10 0.57 8.14 -2.39 -0.02 0.55 16 41 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 42 H 0.08 2.42 7.05 -2.39 -0.02 2.40 16 43 H 0.07 2.29 7.15 -2.39 -0.02 2.28 16 44 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 45 H 0.01 0.49 8.14 -2.39 -0.02 0.47 16 46 H 0.04 1.40 6.14 -2.38 -0.01 1.38 16 47 H 0.37 16.63 4.71 -92.71 -0.44 16.19 16 48 H 0.26 16.03 8.31 -92.71 -0.77 15.26 16 Total: -1.00 -76.63 382.59 2.56 -74.07 By element: Atomic # 1 Polarization: 26.03 SS G_CDS: 0.30 Total: 26.33 kcal Atomic # 6 Polarization: -1.49 SS G_CDS: 6.59 Total: 5.09 kcal Atomic # 7 Polarization: -125.97 SS G_CDS: -6.17 Total: -132.14 kcal Atomic # 8 Polarization: -21.56 SS G_CDS: -0.06 Total: -21.62 kcal Atomic # 14 Polarization: 46.36 SS G_CDS: 1.90 Total: 48.26 kcal Total: -76.63 2.56 -74.07 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001185260216.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.182 kcal (2) G-P(sol) polarization free energy of solvation -76.630 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.552 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.560 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.070 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds