Wall clock time and date at job start Tue Mar 31 2020 17:35:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 109.49513 * 2 1 4 4 C 1.53190 * 109.49864 * 239.93689 * 2 1 3 5 5 N 1.46923 * 108.77809 * 185.38212 * 4 2 1 6 6 C 1.34784 * 120.62964 * 233.58685 * 5 4 2 7 7 O 1.21279 * 119.99925 * 359.97438 * 6 5 4 8 8 C 1.50700 * 119.99961 * 179.97438 * 6 5 4 9 9 O 1.42896 * 109.47293 * 179.97438 * 8 6 5 10 10 C 1.35914 * 117.00022 * 179.97438 * 9 8 6 11 11 C 1.39136 * 120.46982 * 179.72338 * 10 9 8 12 12 C 1.38535 * 118.37030 * 179.71634 * 11 10 9 13 13 C 1.38254 * 119.22247 * 0.58171 * 12 11 10 14 14 N 1.31842 * 120.88462 * 359.67788 * 13 12 11 15 15 C 1.31842 * 121.78272 * 0.02579 * 14 13 12 16 16 C 1.46927 * 118.73985 * 53.85904 * 5 4 2 17 17 C 1.53626 * 108.53906 * 306.09366 * 16 5 4 18 18 C 1.53036 * 109.52542 * 120.08105 * 2 1 3 19 19 H 1.09010 * 109.46030 * 61.31325 * 18 2 1 20 20 C 1.52998 * 109.46186 * 301.35506 * 18 2 1 21 21 N 1.46496 * 109.47341 * 174.99670 * 20 18 2 22 22 C 1.36941 * 120.00175 * 179.97438 * 21 20 18 23 23 H 1.08003 * 119.99863 * 359.97438 * 22 21 20 24 24 C 1.38812 * 119.99964 * 180.02562 * 22 21 20 25 25 N 1.31619 * 119.99744 * 179.97438 * 24 22 21 26 26 Si 1.86797 * 120.00194 * 359.97438 * 24 22 21 27 27 H 1.48504 * 109.46973 * 90.00539 * 26 24 22 28 28 H 1.48492 * 109.47291 * 210.00621 * 26 24 22 29 29 H 1.48499 * 109.47252 * 330.00704 * 26 24 22 30 30 H 1.08997 * 109.46935 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47215 * 300.06494 * 1 2 3 32 32 H 1.09004 * 109.46902 * 60.06264 * 1 2 3 33 33 H 1.09007 * 109.58645 * 65.59195 * 4 2 1 34 34 H 1.08998 * 109.70504 * 305.24059 * 4 2 1 35 35 H 1.09004 * 109.46932 * 300.00223 * 8 6 5 36 36 H 1.08997 * 109.47392 * 59.99562 * 8 6 5 37 37 H 1.08002 * 120.81732 * 359.97438 * 11 10 9 38 38 H 1.08008 * 120.39287 * 180.25962 * 12 11 10 39 39 H 1.07999 * 119.55695 * 179.70316 * 13 12 11 40 40 H 1.08002 * 119.65758 * 180.02562 * 15 14 13 41 41 H 1.08998 * 109.58645 * 65.92691 * 16 5 4 42 42 H 1.09001 * 109.58579 * 186.35848 * 16 5 4 43 43 H 1.08990 * 109.63926 * 294.86483 * 17 16 5 44 44 H 1.09005 * 109.42826 * 174.72267 * 17 16 5 45 45 H 1.09000 * 109.46928 * 295.00107 * 20 18 2 46 46 H 1.09002 * 109.46949 * 54.99554 * 20 18 2 47 47 H 0.97006 * 119.99888 * 0.02562 * 21 20 18 48 48 H 0.96998 * 119.99812 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0413 -0.7234 -1.2498 5 7 3.5046 -0.8281 -1.1702 6 6 4.2807 -0.3849 -2.1791 7 8 3.7722 0.1056 -3.1649 8 6 5.7803 -0.4987 -2.0823 9 8 6.3760 0.0351 -3.2664 10 6 7.7329 0.0090 -3.3402 11 6 8.3881 0.5048 -4.4630 12 6 9.7725 0.4622 -4.4897 13 6 10.4520 -0.0783 -3.4138 14 7 9.8003 -0.5447 -2.3668 15 6 8.4839 -0.5174 -2.2996 16 6 4.1057 -1.4306 0.0275 17 6 3.5715 -0.6941 1.2653 18 6 2.0415 -0.7229 1.2481 19 1 1.6978 -1.7574 1.2350 20 6 1.5044 -0.0235 2.4984 21 7 1.8944 -0.7834 3.6886 22 6 1.5239 -0.3457 4.9322 23 1 0.9446 0.5599 5.0355 24 6 1.8940 -1.0654 6.0600 25 7 1.5383 -0.6445 7.2553 26 14 2.8966 -2.6313 5.8813 27 1 4.3437 -2.3000 5.9228 28 1 2.5691 -3.5585 6.9940 29 1 2.5744 -3.2803 4.5851 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5148 0.8894 32 1 -0.3633 0.5129 -0.8906 33 1 1.7632 -0.1575 -2.1390 34 1 1.6058 -1.7213 -1.3008 35 1 6.1318 0.0598 -1.2147 36 1 6.0590 -1.5472 -1.9767 37 1 7.8312 0.9166 -5.2918 38 1 10.3146 0.8419 -5.3433 39 1 11.5311 -0.1186 -3.4309 40 1 7.9852 -0.9085 -1.4251 41 1 3.8350 -2.4851 0.0811 42 1 5.1902 -1.3315 -0.0187 43 1 3.9160 0.3398 1.2534 44 1 3.9346 -1.1888 2.1663 45 1 1.9186 0.9829 2.5579 46 1 0.4172 0.0337 2.4439 47 1 2.4157 -1.5961 3.5959 48 1 1.7966 -1.1476 8.0433 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001185305042.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:35:11 Heat of formation + Delta-G solvation = -20.826138 kcal Electronic energy + Delta-G solvation = -28405.490041 eV Core-core repulsion = 24461.277791 eV Total energy + Delta-G solvation = -3944.212250 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.19893 -40.41636 -38.74248 -37.81565 -35.27276 -33.82781 -32.84455 -32.14394 -30.93748 -30.76178 -29.30629 -27.28605 -26.36596 -24.18948 -23.72787 -23.23272 -22.64226 -21.30839 -20.27726 -19.39576 -18.91714 -17.69500 -17.40208 -17.19688 -16.87622 -16.59653 -16.00998 -15.24871 -14.95045 -14.83186 -14.61288 -14.30399 -14.25078 -14.03498 -13.71144 -13.48926 -13.37233 -13.22275 -12.96887 -12.87198 -12.59119 -12.51859 -12.08691 -12.01231 -11.89962 -11.80620 -11.38655 -11.07167 -10.94245 -10.58715 -10.53160 -10.21006 -10.17592 -10.16616 -10.03626 -9.81763 -9.61959 -8.94246 -8.92196 -8.84156 -7.25865 -5.80171 -3.15701 0.66308 0.85164 2.06895 2.23636 3.06253 3.31900 3.33286 3.36764 3.41087 3.95195 4.05434 4.22781 4.43295 4.47378 4.52145 4.54642 4.58964 4.63222 4.70379 4.79734 4.85005 4.93610 5.08489 5.08840 5.18985 5.30613 5.48991 5.50815 5.53623 5.60874 5.62753 5.65921 5.68251 5.71227 5.82849 6.00102 6.05422 6.09324 6.12831 6.24477 6.30824 6.35127 6.67537 6.69602 6.75475 7.05377 7.51682 7.81148 7.96267 8.38838 9.17842 9.89974 10.09681 11.38392 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.013050 B = 0.002564 C = 0.002214 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2145.018126 B =10918.774146 C =12642.736499 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.096 4.096 3 H 0.076 0.924 4 C 0.119 3.881 5 N -0.604 5.604 6 C 0.520 3.480 7 O -0.522 6.522 8 C 0.037 3.963 9 O -0.284 6.284 10 C 0.080 3.920 11 C -0.106 4.106 12 C -0.131 4.131 13 C 0.059 3.941 14 N -0.448 5.448 15 C 0.016 3.984 16 C 0.101 3.899 17 C -0.129 4.129 18 C -0.094 4.094 19 H 0.073 0.927 20 C 0.160 3.840 21 N -0.755 5.755 22 C -0.243 4.243 23 H 0.089 0.911 24 C 0.003 3.997 25 N -0.934 5.934 26 Si 0.884 3.116 27 H -0.284 1.284 28 H -0.291 1.291 29 H -0.277 1.277 30 H 0.056 0.944 31 H 0.070 0.930 32 H 0.053 0.947 33 H 0.092 0.908 34 H 0.070 0.930 35 H 0.098 0.902 36 H 0.096 0.904 37 H 0.145 0.855 38 H 0.143 0.857 39 H 0.159 0.841 40 H 0.158 0.842 41 H 0.077 0.923 42 H 0.080 0.920 43 H 0.070 0.930 44 H 0.084 0.916 45 H 0.026 0.974 46 H 0.033 0.967 47 H 0.359 0.641 48 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.421 -0.866 -24.601 27.572 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.116 4.116 3 H 0.094 0.906 4 C -0.002 4.002 5 N -0.339 5.339 6 C 0.306 3.694 7 O -0.397 6.397 8 C -0.041 4.041 9 O -0.194 6.194 10 C 0.033 3.967 11 C -0.132 4.132 12 C -0.151 4.151 13 C -0.099 4.099 14 N -0.158 5.158 15 C -0.142 4.142 16 C -0.022 4.022 17 C -0.167 4.167 18 C -0.113 4.113 19 H 0.091 0.909 20 C 0.033 3.967 21 N -0.401 5.401 22 C -0.373 4.373 23 H 0.107 0.893 24 C -0.193 4.193 25 N -0.582 5.582 26 Si 0.714 3.286 27 H -0.211 1.211 28 H -0.217 1.217 29 H -0.204 1.204 30 H 0.076 0.924 31 H 0.089 0.911 32 H 0.072 0.928 33 H 0.111 0.889 34 H 0.088 0.912 35 H 0.116 0.884 36 H 0.114 0.886 37 H 0.162 0.838 38 H 0.161 0.839 39 H 0.176 0.824 40 H 0.175 0.825 41 H 0.095 0.905 42 H 0.098 0.902 43 H 0.089 0.911 44 H 0.103 0.897 45 H 0.044 0.956 46 H 0.051 0.949 47 H 0.192 0.808 48 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 12.345 -0.737 -24.399 27.354 hybrid contribution 0.342 -0.930 -0.255 1.023 sum 12.687 -1.667 -24.654 27.777 Atomic orbital electron populations 1.21840 0.94054 1.02307 1.02372 1.21452 0.96389 1.00029 0.93747 0.90592 1.21763 0.77772 1.01212 0.99496 1.48038 1.07310 1.60580 1.17969 1.19842 0.87758 0.78622 0.83181 1.90740 1.74819 1.43539 1.30633 1.22627 0.92469 1.00789 0.88215 1.86164 1.16273 1.77586 1.39418 1.20130 0.83293 0.97319 0.96005 1.20989 0.94204 1.00705 0.97310 1.22056 0.93599 0.99196 1.00230 1.22713 1.00711 0.96953 0.89538 1.67540 1.08701 1.13838 1.25678 1.22961 0.90575 1.02082 0.98623 1.22056 0.97709 0.97880 0.84544 1.22046 0.96378 1.01468 0.96802 1.21406 0.94483 1.00379 0.95009 0.90876 1.20735 0.97304 0.94117 0.84501 1.42725 1.66271 1.28501 1.02608 1.19056 1.28561 1.07843 0.81857 0.89296 1.24686 1.00762 0.98691 0.95131 1.69701 1.50866 1.40605 0.97048 0.86555 0.80599 0.84466 0.76938 1.21057 1.21746 1.20370 0.92450 0.91065 0.92799 0.88929 0.91153 0.88416 0.88640 0.83751 0.83893 0.82388 0.82460 0.90516 0.90155 0.91096 0.89734 0.95648 0.94909 0.80770 0.93054 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.60 8.82 37.16 0.33 -1.27 16 2 C -0.10 -1.10 2.41 -90.50 -0.22 -1.32 16 3 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 4 C 0.12 1.28 5.71 -3.71 -0.02 1.26 16 5 N -0.60 -6.33 2.97 -172.50 -0.51 -6.84 16 6 C 0.52 6.11 7.78 -10.98 -0.09 6.03 16 7 O -0.52 -8.18 15.91 -14.35 -0.23 -8.41 16 8 C 0.04 0.33 3.58 36.01 0.13 0.46 16 9 O -0.28 -3.13 9.68 -39.38 -0.38 -3.52 16 10 C 0.08 0.78 6.71 -39.08 -0.26 0.52 16 11 C -0.11 -0.86 10.13 -39.14 -0.40 -1.26 16 12 C -0.13 -0.85 10.11 -39.47 -0.40 -1.25 16 13 C 0.06 0.45 11.18 -17.54 -0.20 0.25 16 14 N -0.45 -4.49 10.35 -13.13 -0.14 -4.63 16 15 C 0.02 0.14 10.22 -17.38 -0.18 -0.03 16 16 C 0.10 0.90 6.37 -3.48 -0.02 0.88 16 17 C -0.13 -1.53 5.26 -26.38 -0.14 -1.67 16 18 C -0.09 -1.25 1.73 -90.58 -0.16 -1.40 16 19 H 0.07 0.99 8.14 -51.92 -0.42 0.56 16 20 C 0.16 2.86 5.41 -4.04 -0.02 2.84 16 21 N -0.76 -16.93 5.12 -59.91 -0.31 -17.24 16 22 C -0.24 -6.71 10.47 -15.06 -0.16 -6.87 16 23 H 0.09 2.65 8.06 -52.48 -0.42 2.23 16 24 C 0.00 0.09 5.50 -17.43 -0.10 -0.01 16 25 N -0.93 -28.98 13.97 55.49 0.78 -28.20 16 26 Si 0.88 21.36 27.73 -169.99 -4.71 16.64 16 27 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 28 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 29 H -0.28 -6.20 6.52 56.52 0.37 -5.83 16 30 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.07 0.85 6.31 -51.93 -0.33 0.52 16 32 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.09 1.08 7.01 -51.93 -0.36 0.72 16 34 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.10 0.68 7.24 -51.93 -0.38 0.30 16 36 H 0.10 0.60 7.47 -51.93 -0.39 0.21 16 37 H 0.14 1.00 8.06 -52.49 -0.42 0.57 16 38 H 0.14 0.49 8.06 -52.48 -0.42 0.06 16 39 H 0.16 0.77 8.06 -52.49 -0.42 0.35 16 40 H 0.16 1.11 6.32 -52.49 -0.33 0.78 16 41 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 42 H 0.08 0.52 5.93 -51.93 -0.31 0.21 16 43 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 44 H 0.08 1.12 7.15 -51.93 -0.37 0.75 16 45 H 0.03 0.48 8.14 -51.93 -0.42 0.05 16 46 H 0.03 0.60 6.14 -51.93 -0.32 0.28 16 47 H 0.36 7.74 4.71 -40.82 -0.19 7.55 16 48 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 LS Contribution 381.80 15.07 5.75 5.75 Total: -1.00 -35.26 381.80 -8.86 -44.13 By element: Atomic # 1 Polarization: 12.39 SS G_CDS: -7.22 Total: 5.17 kcal Atomic # 6 Polarization: -0.97 SS G_CDS: -1.89 Total: -2.86 kcal Atomic # 7 Polarization: -56.73 SS G_CDS: -0.18 Total: -56.91 kcal Atomic # 8 Polarization: -11.32 SS G_CDS: -0.61 Total: -11.93 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -4.71 Total: 16.64 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -35.26 -8.86 -44.13 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001185305042.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.300 kcal (2) G-P(sol) polarization free energy of solvation -35.265 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.964 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.862 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.127 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.826 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds