Wall clock time and date at job start Tue Mar 31 2020 17:35:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 109.49513 * 2 1 4 4 C 1.53190 * 109.49864 * 239.93689 * 2 1 3 5 5 N 1.46923 * 108.77809 * 185.38212 * 4 2 1 6 6 C 1.34784 * 120.62964 * 233.58685 * 5 4 2 7 7 O 1.21279 * 119.99925 * 359.97438 * 6 5 4 8 8 C 1.50700 * 119.99961 * 179.97438 * 6 5 4 9 9 O 1.42896 * 109.47293 * 179.97438 * 8 6 5 10 10 C 1.35914 * 117.00022 * 179.97438 * 9 8 6 11 11 C 1.39136 * 120.46982 * 179.72338 * 10 9 8 12 12 C 1.38535 * 118.37030 * 179.71634 * 11 10 9 13 13 C 1.38254 * 119.22247 * 0.58171 * 12 11 10 14 14 N 1.31842 * 120.88462 * 359.67788 * 13 12 11 15 15 C 1.31842 * 121.78272 * 0.02579 * 14 13 12 16 16 C 1.46927 * 118.73985 * 53.85904 * 5 4 2 17 17 C 1.53626 * 108.53906 * 306.09366 * 16 5 4 18 18 C 1.53036 * 109.52542 * 120.08105 * 2 1 3 19 19 H 1.09010 * 109.46030 * 61.31325 * 18 2 1 20 20 C 1.52998 * 109.46186 * 301.35506 * 18 2 1 21 21 N 1.46496 * 109.47341 * 174.99670 * 20 18 2 22 22 C 1.36941 * 120.00175 * 179.97438 * 21 20 18 23 23 H 1.08003 * 119.99863 * 359.97438 * 22 21 20 24 24 C 1.38812 * 119.99964 * 180.02562 * 22 21 20 25 25 N 1.31619 * 119.99744 * 179.97438 * 24 22 21 26 26 Si 1.86797 * 120.00194 * 359.97438 * 24 22 21 27 27 H 1.48504 * 109.46973 * 90.00539 * 26 24 22 28 28 H 1.48492 * 109.47291 * 210.00621 * 26 24 22 29 29 H 1.48499 * 109.47252 * 330.00704 * 26 24 22 30 30 H 1.08997 * 109.46935 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47215 * 300.06494 * 1 2 3 32 32 H 1.09004 * 109.46902 * 60.06264 * 1 2 3 33 33 H 1.09007 * 109.58645 * 65.59195 * 4 2 1 34 34 H 1.08998 * 109.70504 * 305.24059 * 4 2 1 35 35 H 1.09004 * 109.46932 * 300.00223 * 8 6 5 36 36 H 1.08997 * 109.47392 * 59.99562 * 8 6 5 37 37 H 1.08002 * 120.81732 * 359.97438 * 11 10 9 38 38 H 1.08008 * 120.39287 * 180.25962 * 12 11 10 39 39 H 1.07999 * 119.55695 * 179.70316 * 13 12 11 40 40 H 1.08002 * 119.65758 * 180.02562 * 15 14 13 41 41 H 1.08998 * 109.58645 * 65.92691 * 16 5 4 42 42 H 1.09001 * 109.58579 * 186.35848 * 16 5 4 43 43 H 1.08990 * 109.63926 * 294.86483 * 17 16 5 44 44 H 1.09005 * 109.42826 * 174.72267 * 17 16 5 45 45 H 1.09000 * 109.46928 * 295.00107 * 20 18 2 46 46 H 1.09002 * 109.46949 * 54.99554 * 20 18 2 47 47 H 0.97006 * 119.99888 * 0.02562 * 21 20 18 48 48 H 0.96998 * 119.99812 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0413 -0.7234 -1.2498 5 7 3.5046 -0.8281 -1.1702 6 6 4.2807 -0.3849 -2.1791 7 8 3.7722 0.1056 -3.1649 8 6 5.7803 -0.4987 -2.0823 9 8 6.3760 0.0351 -3.2664 10 6 7.7329 0.0090 -3.3402 11 6 8.3881 0.5048 -4.4630 12 6 9.7725 0.4622 -4.4897 13 6 10.4520 -0.0783 -3.4138 14 7 9.8003 -0.5447 -2.3668 15 6 8.4839 -0.5174 -2.2996 16 6 4.1057 -1.4306 0.0275 17 6 3.5715 -0.6941 1.2653 18 6 2.0415 -0.7229 1.2481 19 1 1.6978 -1.7574 1.2350 20 6 1.5044 -0.0235 2.4984 21 7 1.8944 -0.7834 3.6886 22 6 1.5239 -0.3457 4.9322 23 1 0.9446 0.5599 5.0355 24 6 1.8940 -1.0654 6.0600 25 7 1.5383 -0.6445 7.2553 26 14 2.8966 -2.6313 5.8813 27 1 4.3437 -2.3000 5.9228 28 1 2.5691 -3.5585 6.9940 29 1 2.5744 -3.2803 4.5851 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5148 0.8894 32 1 -0.3633 0.5129 -0.8906 33 1 1.7632 -0.1575 -2.1390 34 1 1.6058 -1.7213 -1.3008 35 1 6.1318 0.0598 -1.2147 36 1 6.0590 -1.5472 -1.9767 37 1 7.8312 0.9166 -5.2918 38 1 10.3146 0.8419 -5.3433 39 1 11.5311 -0.1186 -3.4309 40 1 7.9852 -0.9085 -1.4251 41 1 3.8350 -2.4851 0.0811 42 1 5.1902 -1.3315 -0.0187 43 1 3.9160 0.3398 1.2534 44 1 3.9346 -1.1888 2.1663 45 1 1.9186 0.9829 2.5579 46 1 0.4172 0.0337 2.4439 47 1 2.4157 -1.5961 3.5959 48 1 1.7966 -1.1476 8.0433 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001185305042.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:35:10 Heat of formation + Delta-G solvation = -43.927745 kcal Electronic energy + Delta-G solvation = -28406.491802 eV Core-core repulsion = 24461.277791 eV Total energy + Delta-G solvation = -3945.214011 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.89132 -41.21273 -39.58354 -38.70115 -36.70841 -35.11214 -33.65443 -33.39195 -32.33313 -31.53073 -30.06344 -28.60208 -27.24325 -25.33705 -24.63972 -23.98609 -23.70773 -22.68066 -21.31342 -20.30831 -19.67779 -19.47407 -18.19433 -17.82145 -17.57610 -17.32757 -16.86830 -16.58053 -16.16534 -15.85463 -15.60901 -15.37617 -15.26117 -14.91542 -14.72714 -14.62935 -14.40062 -14.18535 -14.00980 -13.99831 -13.62232 -13.25582 -13.15194 -13.12791 -12.92481 -12.82616 -12.69215 -12.53594 -12.16398 -11.98890 -11.84302 -11.65209 -11.51126 -11.24434 -10.99144 -10.88326 -10.72384 -10.45004 -9.75112 -9.53051 -9.25718 -8.00767 -5.34375 0.11143 0.25571 1.33938 1.38886 1.40149 1.44519 1.51998 2.35614 2.50991 2.79485 3.23446 3.30599 3.50294 3.53362 3.65795 3.71674 3.79720 3.91117 3.95630 3.97973 3.98825 4.05334 4.09781 4.27856 4.36972 4.44145 4.48918 4.60940 4.61361 4.65625 4.72512 4.79113 4.81450 4.95870 4.98887 5.06855 5.11353 5.13035 5.17516 5.25444 5.33729 5.45423 5.52304 5.57593 5.77762 6.06297 6.22821 6.24888 6.94215 6.96339 7.10609 7.86146 8.07165 9.21043 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.013050 B = 0.002564 C = 0.002214 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2145.018126 B =10918.774146 C =12642.736499 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.087 4.087 3 H 0.064 0.936 4 C 0.122 3.878 5 N -0.601 5.601 6 C 0.516 3.484 7 O -0.570 6.570 8 C 0.037 3.963 9 O -0.309 6.309 10 C 0.064 3.936 11 C -0.119 4.119 12 C -0.122 4.122 13 C 0.051 3.949 14 N -0.477 5.477 15 C 0.007 3.993 16 C 0.104 3.896 17 C -0.129 4.129 18 C -0.084 4.084 19 H 0.081 0.919 20 C 0.158 3.842 21 N -0.753 5.753 22 C -0.235 4.235 23 H 0.050 0.950 24 C -0.069 4.069 25 N -0.987 5.987 26 Si 0.959 3.041 27 H -0.274 1.274 28 H -0.300 1.300 29 H -0.244 1.244 30 H 0.065 0.935 31 H 0.054 0.946 32 H 0.066 0.934 33 H 0.081 0.919 34 H 0.087 0.913 35 H 0.119 0.881 36 H 0.126 0.874 37 H 0.151 0.849 38 H 0.176 0.824 39 H 0.183 0.817 40 H 0.175 0.825 41 H 0.096 0.904 42 H 0.112 0.888 43 H 0.063 0.937 44 H 0.076 0.924 45 H 0.014 0.986 46 H 0.028 0.972 47 H 0.368 0.632 48 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.668 -2.854 -26.637 30.542 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.107 4.107 3 H 0.083 0.917 4 C 0.000 4.000 5 N -0.334 5.334 6 C 0.305 3.695 7 O -0.449 6.449 8 C -0.041 4.041 9 O -0.220 6.220 10 C 0.016 3.984 11 C -0.146 4.146 12 C -0.141 4.141 13 C -0.107 4.107 14 N -0.187 5.187 15 C -0.151 4.151 16 C -0.018 4.018 17 C -0.167 4.167 18 C -0.103 4.103 19 H 0.099 0.901 20 C 0.032 3.968 21 N -0.400 5.400 22 C -0.366 4.366 23 H 0.068 0.932 24 C -0.260 4.260 25 N -0.638 5.638 26 Si 0.785 3.215 27 H -0.200 1.200 28 H -0.227 1.227 29 H -0.168 1.168 30 H 0.084 0.916 31 H 0.073 0.927 32 H 0.085 0.915 33 H 0.100 0.900 34 H 0.105 0.895 35 H 0.136 0.864 36 H 0.143 0.857 37 H 0.169 0.831 38 H 0.193 0.807 39 H 0.200 0.800 40 H 0.192 0.808 41 H 0.114 0.886 42 H 0.130 0.870 43 H 0.082 0.918 44 H 0.095 0.905 45 H 0.032 0.968 46 H 0.046 0.954 47 H 0.202 0.798 48 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 14.597 -2.730 -26.472 30.353 hybrid contribution -0.405 -0.164 0.354 0.562 sum 14.191 -2.894 -26.118 29.865 Atomic orbital electron populations 1.21817 0.93638 1.02787 1.02185 1.21338 0.96716 0.99286 0.93354 0.91749 1.21698 0.78340 1.01734 0.98216 1.48103 1.07139 1.59996 1.18174 1.20384 0.89070 0.77539 0.82552 1.90717 1.75886 1.45726 1.32547 1.22767 0.90124 1.02864 0.88332 1.86122 1.17123 1.78281 1.40510 1.20304 0.82809 0.98382 0.96868 1.21314 0.95188 1.00721 0.97349 1.22395 0.92946 0.97931 1.00832 1.23234 1.02009 0.96183 0.89224 1.67567 1.09152 1.15025 1.26958 1.23198 0.90538 1.02203 0.99124 1.22189 0.99416 0.98081 0.82087 1.22015 0.95037 1.01555 0.98133 1.21304 0.95713 1.00171 0.93097 0.90112 1.20877 0.97128 0.93709 0.85091 1.42664 1.66175 1.29093 1.02027 1.19011 1.27048 1.06309 0.84202 0.93233 1.25602 1.02808 1.03060 0.94542 1.69908 1.53116 1.42657 0.98114 0.85357 0.78823 0.79319 0.78001 1.19973 1.22719 1.16786 0.91620 0.92736 0.91520 0.90008 0.89507 0.86385 0.85657 0.83116 0.80658 0.79984 0.80834 0.88625 0.87006 0.91833 0.90527 0.96823 0.95418 0.79799 0.93411 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.02 8.82 71.98 0.63 -2.38 16 2 C -0.09 -1.88 2.41 -10.72 -0.03 -1.90 16 3 H 0.06 1.54 8.14 -2.39 -0.02 1.53 16 4 C 0.12 2.38 5.71 86.36 0.49 2.88 16 5 N -0.60 -11.07 2.97 -818.06 -2.43 -13.50 16 6 C 0.52 11.26 7.78 87.66 0.68 11.95 16 7 O -0.57 -17.68 15.91 16.01 0.25 -17.42 16 8 C 0.04 0.56 3.58 71.24 0.25 0.81 16 9 O -0.31 -6.46 9.68 -73.55 -0.71 -7.18 16 10 C 0.06 1.15 6.71 22.60 0.15 1.30 16 11 C -0.12 -1.79 10.13 22.56 0.23 -1.56 16 12 C -0.12 -1.29 10.11 22.34 0.23 -1.07 16 13 C 0.05 0.66 11.18 84.69 0.95 1.61 16 14 N -0.48 -8.68 10.35 -195.45 -2.02 -10.71 16 15 C 0.01 0.11 10.22 84.80 0.87 0.98 16 16 C 0.10 1.46 6.37 86.51 0.55 2.01 16 17 C -0.13 -2.74 5.26 30.82 0.16 -2.58 16 18 C -0.08 -2.08 1.73 -10.77 -0.02 -2.09 16 19 H 0.08 1.93 8.14 -2.38 -0.02 1.91 16 20 C 0.16 5.58 5.41 86.38 0.47 6.05 16 21 N -0.75 -33.18 5.12 -343.46 -1.76 -34.93 16 22 C -0.23 -13.17 10.47 84.03 0.88 -12.29 16 23 H 0.05 3.10 8.06 -2.91 -0.02 3.08 16 24 C -0.07 -4.00 5.50 84.86 0.47 -3.54 16 25 N -0.99 -62.97 13.97 21.65 0.30 -62.67 16 26 Si 0.96 43.46 27.73 68.60 1.90 45.36 16 27 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 28 H -0.30 -14.03 7.11 99.48 0.71 -13.32 16 29 H -0.24 -9.58 6.52 99.48 0.65 -8.93 16 30 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 31 H 0.05 1.30 6.31 -2.39 -0.02 1.28 16 32 H 0.07 1.20 8.14 -2.38 -0.02 1.18 16 33 H 0.08 1.83 7.01 -2.38 -0.02 1.82 16 34 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 35 H 0.12 1.28 7.24 -2.38 -0.02 1.26 16 36 H 0.13 1.12 7.47 -2.39 -0.02 1.10 16 37 H 0.15 1.93 8.06 -2.91 -0.02 1.91 16 38 H 0.18 0.60 8.06 -2.91 -0.02 0.58 16 39 H 0.18 1.28 8.06 -2.91 -0.02 1.25 16 40 H 0.17 2.00 6.32 -2.91 -0.02 1.98 16 41 H 0.10 1.09 8.14 -2.39 -0.02 1.07 16 42 H 0.11 0.91 5.93 -2.39 -0.01 0.90 16 43 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 44 H 0.08 1.79 7.15 -2.38 -0.02 1.77 16 45 H 0.01 0.52 8.14 -2.39 -0.02 0.50 16 46 H 0.03 1.02 6.14 -2.39 -0.01 1.01 16 47 H 0.37 14.93 4.71 -92.70 -0.44 14.49 16 48 H 0.26 15.60 8.31 -92.71 -0.77 14.83 16 Total: -1.00 -79.81 381.80 2.98 -76.83 By element: Atomic # 1 Polarization: 23.56 SS G_CDS: 0.48 Total: 24.03 kcal Atomic # 6 Polarization: -6.79 SS G_CDS: 6.97 Total: 0.18 kcal Atomic # 7 Polarization: -115.90 SS G_CDS: -5.91 Total: -121.80 kcal Atomic # 8 Polarization: -24.14 SS G_CDS: -0.46 Total: -24.60 kcal Atomic # 14 Polarization: 43.46 SS G_CDS: 1.90 Total: 45.36 kcal Total: -79.81 2.98 -76.83 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001185305042.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.905 kcal (2) G-P(sol) polarization free energy of solvation -79.812 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.907 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.833 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.928 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds