Wall clock time and date at job start Tue Mar 31 2020 17:35:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.50059 * 2 1 4 4 C 1.53195 * 109.49899 * 120.10022 * 2 1 3 5 5 N 1.47207 * 108.85456 * 174.60016 * 4 2 1 6 6 C 1.34773 * 120.81153 * 126.34215 * 5 4 2 7 7 O 1.21281 * 120.00152 * 0.14258 * 6 5 4 8 8 C 1.50700 * 119.99924 * 180.13388 * 6 5 4 9 9 O 1.42896 * 109.47247 * 180.02562 * 8 6 5 10 10 C 1.35911 * 117.00285 * 180.02562 * 9 8 6 11 11 C 1.39144 * 120.47852 * 179.72411 * 10 9 8 12 12 C 1.38531 * 118.37590 * 179.71495 * 11 10 9 13 13 C 1.38259 * 119.21888 * 0.58140 * 12 11 10 14 14 N 1.31844 * 120.88772 * 359.67902 * 13 12 11 15 15 C 1.31840 * 121.78012 * 0.02618 * 14 13 12 16 16 C 1.46926 * 118.55531 * 306.47735 * 5 4 2 17 17 C 1.53191 * 108.89109 * 53.54119 * 16 5 4 18 18 C 1.53035 * 109.31327 * 305.29292 * 17 16 5 19 19 H 1.09004 * 109.45942 * 301.34050 * 18 17 16 20 20 C 1.52999 * 109.45926 * 181.37380 * 18 17 16 21 21 N 1.46507 * 109.47439 * 65.00278 * 20 18 17 22 22 C 1.36930 * 120.00216 * 180.02562 * 21 20 18 23 23 H 1.08006 * 120.00211 * 359.97438 * 22 21 20 24 24 C 1.38812 * 119.99889 * 179.97438 * 22 21 20 25 25 N 1.31622 * 120.00070 * 0.02562 * 24 22 21 26 26 Si 1.86807 * 120.00016 * 179.97438 * 24 22 21 27 27 H 1.48505 * 109.46638 * 90.00024 * 26 24 22 28 28 H 1.48491 * 109.47191 * 210.00186 * 26 24 22 29 29 H 1.48502 * 109.47052 * 330.00190 * 26 24 22 30 30 H 1.08991 * 109.47122 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.46483 * 300.06376 * 1 2 3 32 32 H 1.08994 * 109.46935 * 60.05876 * 1 2 3 33 33 H 1.08996 * 109.58670 * 294.37379 * 4 2 1 34 34 H 1.08997 * 109.58526 * 54.79445 * 4 2 1 35 35 H 1.09002 * 109.47628 * 300.00335 * 8 6 5 36 36 H 1.09003 * 109.47142 * 60.00485 * 8 6 5 37 37 H 1.08002 * 120.80618 * 359.97438 * 11 10 9 38 38 H 1.07998 * 120.39289 * 180.26194 * 12 11 10 39 39 H 1.07998 * 119.55719 * 179.70332 * 13 12 11 40 40 H 1.08005 * 119.65489 * 180.02562 * 15 14 13 41 41 H 1.09002 * 109.58861 * 293.68122 * 16 5 4 42 42 H 1.08996 * 109.58519 * 173.40013 * 16 5 4 43 43 H 1.09003 * 109.49975 * 65.24379 * 17 16 5 44 44 H 1.09000 * 109.49553 * 185.30642 * 17 16 5 45 45 H 1.09003 * 109.47169 * 184.99579 * 20 18 17 46 46 H 1.09001 * 109.47280 * 304.99784 * 20 18 17 47 47 H 0.97002 * 119.99289 * 359.97438 * 21 20 18 48 48 H 0.96995 * 119.99805 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0275 0.0000 4 6 2.0414 -0.7242 1.2494 5 7 3.5075 -0.8304 1.1711 6 6 4.2864 -0.3882 2.1781 7 8 3.7808 0.1021 3.1655 8 6 5.7856 -0.5032 2.0774 9 8 6.3848 0.0297 3.2602 10 6 7.7418 0.0026 3.3305 11 6 8.4009 0.5078 4.4470 12 6 9.7848 0.4528 4.4755 13 6 10.4611 -0.0868 3.3971 14 7 9.8064 -0.5522 2.3516 15 6 8.4898 -0.5238 2.2878 16 6 4.1053 -1.4268 -0.0313 17 6 3.5708 -0.6947 -1.2663 18 6 2.0408 -0.7227 -1.2486 19 1 1.6967 -1.7569 -1.2359 20 6 1.5037 -0.0221 -2.4982 21 7 1.8916 -0.7822 -3.6891 22 6 1.5207 -0.3437 -4.9321 23 1 0.9419 0.5624 -5.0347 24 6 1.8887 -1.0637 -6.0604 25 7 2.5936 -2.1682 -5.9354 26 14 1.3822 -0.4658 -7.7562 27 1 2.4298 0.4379 -8.2957 28 1 1.2180 -1.6302 -8.6630 29 1 0.0961 0.2702 -7.6579 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3632 0.5149 0.8895 32 1 -0.3633 0.5129 -0.8905 33 1 1.7638 -0.1587 2.1388 34 1 1.6052 -1.7220 1.2975 35 1 6.0634 -1.5518 1.9707 36 1 6.1354 0.0555 1.2093 37 1 7.8468 0.9287 5.2730 38 1 10.3293 0.8316 5.3277 39 1 11.5402 -0.1281 3.4114 40 1 7.9885 -0.9149 1.4147 41 1 3.8375 -2.4819 -0.0876 42 1 5.1898 -1.3269 0.0118 43 1 3.9159 0.3392 -1.2540 44 1 3.9338 -1.1887 -2.1675 45 1 0.4167 0.0367 -2.4429 46 1 1.9194 0.9838 -2.5578 47 1 2.4117 -1.5958 -3.5969 48 1 2.8511 -2.6710 -6.7239 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001185305044.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:35:14 Heat of formation + Delta-G solvation = -25.417408 kcal Electronic energy + Delta-G solvation = -28298.146648 eV Core-core repulsion = 24353.735305 eV Total energy + Delta-G solvation = -3944.411343 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.13353 -40.32015 -38.65815 -37.72302 -35.10370 -33.72863 -32.79484 -32.06409 -30.87799 -30.38775 -29.20820 -26.97767 -26.24915 -24.13591 -23.74990 -23.22960 -22.60207 -21.41113 -20.13063 -19.27459 -18.84948 -17.40928 -17.20692 -17.06567 -16.80270 -16.51200 -15.91672 -15.17147 -14.88493 -14.78959 -14.56579 -14.21623 -14.01178 -13.93894 -13.66535 -13.52359 -13.25044 -13.22325 -12.80406 -12.63674 -12.54702 -12.51439 -11.99937 -11.88949 -11.82879 -11.68130 -11.03965 -10.94799 -10.84985 -10.44889 -10.39454 -10.24710 -10.11866 -10.05157 -9.95770 -9.75504 -9.67247 -8.89982 -8.86988 -8.75015 -6.94104 -5.80258 -3.08178 0.71244 0.90065 2.14038 2.31809 3.14266 3.41207 3.41703 3.46802 3.48080 4.03153 4.11585 4.28608 4.49711 4.53789 4.55325 4.60591 4.67622 4.71103 4.85868 4.89923 4.98501 5.00961 5.13446 5.20288 5.33551 5.43138 5.53933 5.56100 5.62988 5.70337 5.71462 5.78240 5.83476 5.89828 6.00508 6.07726 6.15579 6.22081 6.25965 6.35210 6.43717 6.55297 6.74864 6.78743 6.88001 7.15412 7.56783 7.67351 7.89360 8.39270 9.50521 10.08272 10.42785 11.42725 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.013673 B = 0.002352 C = 0.002057 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2047.267960 B =11904.074878 C =13606.592952 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.097 4.097 3 H 0.073 0.927 4 C 0.120 3.880 5 N -0.604 5.604 6 C 0.520 3.480 7 O -0.524 6.524 8 C 0.038 3.962 9 O -0.284 6.284 10 C 0.081 3.919 11 C -0.106 4.106 12 C -0.132 4.132 13 C 0.058 3.942 14 N -0.448 5.448 15 C 0.016 3.984 16 C 0.101 3.899 17 C -0.127 4.127 18 C -0.089 4.089 19 H 0.073 0.927 20 C 0.156 3.844 21 N -0.732 5.732 22 C -0.238 4.238 23 H 0.069 0.931 24 C -0.014 4.014 25 N -0.934 5.934 26 Si 0.906 3.094 27 H -0.290 1.290 28 H -0.291 1.291 29 H -0.282 1.282 30 H 0.057 0.943 31 H 0.052 0.948 32 H 0.069 0.931 33 H 0.091 0.909 34 H 0.071 0.929 35 H 0.096 0.904 36 H 0.098 0.902 37 H 0.144 0.856 38 H 0.143 0.857 39 H 0.159 0.841 40 H 0.159 0.841 41 H 0.077 0.923 42 H 0.079 0.921 43 H 0.065 0.935 44 H 0.092 0.908 45 H 0.025 0.975 46 H 0.016 0.984 47 H 0.383 0.617 48 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.066 2.363 21.317 23.693 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.117 4.117 3 H 0.092 0.908 4 C -0.002 4.002 5 N -0.339 5.339 6 C 0.306 3.694 7 O -0.400 6.400 8 C -0.041 4.041 9 O -0.195 6.195 10 C 0.033 3.967 11 C -0.133 4.133 12 C -0.151 4.151 13 C -0.100 4.100 14 N -0.157 5.157 15 C -0.142 4.142 16 C -0.021 4.021 17 C -0.165 4.165 18 C -0.108 4.108 19 H 0.092 0.908 20 C 0.029 3.971 21 N -0.376 5.376 22 C -0.369 4.369 23 H 0.087 0.913 24 C -0.210 4.210 25 N -0.583 5.583 26 Si 0.737 3.263 27 H -0.217 1.217 28 H -0.218 1.218 29 H -0.208 1.208 30 H 0.076 0.924 31 H 0.071 0.929 32 H 0.088 0.912 33 H 0.109 0.891 34 H 0.089 0.911 35 H 0.114 0.886 36 H 0.116 0.884 37 H 0.162 0.838 38 H 0.161 0.839 39 H 0.176 0.824 40 H 0.176 0.824 41 H 0.095 0.905 42 H 0.097 0.903 43 H 0.084 0.916 44 H 0.110 0.890 45 H 0.043 0.957 46 H 0.034 0.966 47 H 0.217 0.783 48 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 10.015 2.439 21.164 23.541 hybrid contribution -0.435 0.245 -0.650 0.819 sum 9.581 2.684 20.514 22.800 Atomic orbital electron populations 1.21830 0.94216 1.02273 1.02164 1.21468 0.96264 0.99955 0.94032 0.90819 1.21802 0.77762 1.01187 0.99407 1.48121 1.07279 1.60598 1.17854 1.19826 0.87719 0.78618 0.83230 1.90733 1.74985 1.43700 1.30592 1.22634 0.92452 1.00843 0.88155 1.86160 1.16188 1.77616 1.39507 1.20135 0.83323 0.97241 0.96014 1.20984 0.94167 1.00668 0.97440 1.22047 0.93625 0.99277 1.00175 1.22710 1.00685 0.97040 0.89530 1.67544 1.08623 1.13772 1.25793 1.22980 0.90589 1.02058 0.98579 1.21973 0.97646 0.98090 0.84426 1.21949 0.96290 1.01173 0.97093 1.21343 0.94555 1.00306 0.94603 0.90824 1.20758 0.96746 0.94047 0.85582 1.42371 1.65484 1.28916 1.00843 1.19220 1.27693 1.06164 0.83826 0.91289 1.24722 1.00960 0.97512 0.97816 1.69645 1.42885 1.17235 1.28563 0.86204 0.78076 0.77474 0.84532 1.21745 1.21780 1.20803 0.92433 0.92935 0.91216 0.89091 0.91110 0.88584 0.88418 0.83786 0.83936 0.82418 0.82387 0.90459 0.90303 0.91637 0.88965 0.95736 0.96567 0.78332 0.93532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.68 8.82 37.16 0.33 -1.36 16 2 C -0.10 -1.19 2.42 -90.50 -0.22 -1.41 16 3 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 4 C 0.12 1.38 5.73 -3.56 -0.02 1.36 16 5 N -0.60 -6.84 2.98 -172.54 -0.51 -7.35 16 6 C 0.52 6.49 7.78 -10.99 -0.09 6.40 16 7 O -0.52 -8.55 15.93 -14.35 -0.23 -8.78 16 8 C 0.04 0.36 3.58 36.01 0.13 0.48 16 9 O -0.28 -3.29 9.68 -39.37 -0.38 -3.67 16 10 C 0.08 0.82 6.71 -39.07 -0.26 0.56 16 11 C -0.11 -0.91 10.13 -39.14 -0.40 -1.31 16 12 C -0.13 -0.90 10.11 -39.47 -0.40 -1.30 16 13 C 0.06 0.47 11.18 -17.54 -0.20 0.27 16 14 N -0.45 -4.68 10.36 -13.12 -0.14 -4.82 16 15 C 0.02 0.16 10.22 -17.37 -0.18 -0.02 16 16 C 0.10 1.01 6.33 -3.71 -0.02 0.99 16 17 C -0.13 -1.67 5.25 -26.61 -0.14 -1.81 16 18 C -0.09 -1.28 1.73 -90.58 -0.16 -1.44 16 19 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 20 C 0.16 2.93 5.41 -4.04 -0.02 2.91 16 21 N -0.73 -17.54 5.32 -59.90 -0.32 -17.86 16 22 C -0.24 -6.48 9.99 -15.06 -0.15 -6.63 16 23 H 0.07 1.84 7.83 -52.48 -0.41 1.43 16 24 C -0.01 -0.40 5.50 -17.43 -0.10 -0.50 16 25 N -0.93 -27.46 13.06 55.49 0.72 -26.73 16 26 Si 0.91 22.07 29.55 -169.99 -5.02 17.05 16 27 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 28 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 29 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 30 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 32 H 0.07 0.87 6.29 -51.93 -0.33 0.55 16 33 H 0.09 1.12 7.02 -51.93 -0.36 0.76 16 34 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.10 0.67 7.48 -51.93 -0.39 0.28 16 36 H 0.10 0.75 7.23 -51.93 -0.38 0.37 16 37 H 0.14 1.05 8.06 -52.49 -0.42 0.63 16 38 H 0.14 0.53 8.06 -52.49 -0.42 0.11 16 39 H 0.16 0.83 8.06 -52.49 -0.42 0.40 16 40 H 0.16 1.21 6.32 -52.48 -0.33 0.88 16 41 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 42 H 0.08 0.60 5.93 -51.93 -0.31 0.29 16 43 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 44 H 0.09 1.41 7.15 -51.93 -0.37 1.03 16 45 H 0.02 0.47 6.14 -51.93 -0.32 0.15 16 46 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 47 H 0.38 9.51 6.85 -40.82 -0.28 9.23 16 48 H 0.25 7.27 8.31 -40.82 -0.34 6.94 16 LS Contribution 384.94 15.07 5.80 5.80 Total: -1.00 -34.07 384.94 -9.23 -43.29 By element: Atomic # 1 Polarization: 13.12 SS G_CDS: -7.26 Total: 5.86 kcal Atomic # 6 Polarization: -0.91 SS G_CDS: -1.89 Total: -2.80 kcal Atomic # 7 Polarization: -56.51 SS G_CDS: -0.24 Total: -56.76 kcal Atomic # 8 Polarization: -11.83 SS G_CDS: -0.61 Total: -12.44 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.02 Total: 17.05 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -34.07 -9.23 -43.29 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001185305044.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.875 kcal (2) G-P(sol) polarization free energy of solvation -34.066 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.191 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.293 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds