Wall clock time and date at job start Tue Mar 31 2020 17:35:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.50059 * 2 1 4 4 C 1.53195 * 109.49899 * 120.10022 * 2 1 3 5 5 N 1.47207 * 108.85456 * 174.60016 * 4 2 1 6 6 C 1.34773 * 120.81153 * 126.34215 * 5 4 2 7 7 O 1.21281 * 120.00152 * 0.14258 * 6 5 4 8 8 C 1.50700 * 119.99924 * 180.13388 * 6 5 4 9 9 O 1.42896 * 109.47247 * 180.02562 * 8 6 5 10 10 C 1.35911 * 117.00285 * 180.02562 * 9 8 6 11 11 C 1.39144 * 120.47852 * 179.72411 * 10 9 8 12 12 C 1.38531 * 118.37590 * 179.71495 * 11 10 9 13 13 C 1.38259 * 119.21888 * 0.58140 * 12 11 10 14 14 N 1.31844 * 120.88772 * 359.67902 * 13 12 11 15 15 C 1.31840 * 121.78012 * 0.02618 * 14 13 12 16 16 C 1.46926 * 118.55531 * 306.47735 * 5 4 2 17 17 C 1.53191 * 108.89109 * 53.54119 * 16 5 4 18 18 C 1.53035 * 109.31327 * 305.29292 * 17 16 5 19 19 H 1.09004 * 109.45942 * 301.34050 * 18 17 16 20 20 C 1.52999 * 109.45926 * 181.37380 * 18 17 16 21 21 N 1.46507 * 109.47439 * 65.00278 * 20 18 17 22 22 C 1.36930 * 120.00216 * 180.02562 * 21 20 18 23 23 H 1.08006 * 120.00211 * 359.97438 * 22 21 20 24 24 C 1.38812 * 119.99889 * 179.97438 * 22 21 20 25 25 N 1.31622 * 120.00070 * 0.02562 * 24 22 21 26 26 Si 1.86807 * 120.00016 * 179.97438 * 24 22 21 27 27 H 1.48505 * 109.46638 * 90.00024 * 26 24 22 28 28 H 1.48491 * 109.47191 * 210.00186 * 26 24 22 29 29 H 1.48502 * 109.47052 * 330.00190 * 26 24 22 30 30 H 1.08991 * 109.47122 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.46483 * 300.06376 * 1 2 3 32 32 H 1.08994 * 109.46935 * 60.05876 * 1 2 3 33 33 H 1.08996 * 109.58670 * 294.37379 * 4 2 1 34 34 H 1.08997 * 109.58526 * 54.79445 * 4 2 1 35 35 H 1.09002 * 109.47628 * 300.00335 * 8 6 5 36 36 H 1.09003 * 109.47142 * 60.00485 * 8 6 5 37 37 H 1.08002 * 120.80618 * 359.97438 * 11 10 9 38 38 H 1.07998 * 120.39289 * 180.26194 * 12 11 10 39 39 H 1.07998 * 119.55719 * 179.70332 * 13 12 11 40 40 H 1.08005 * 119.65489 * 180.02562 * 15 14 13 41 41 H 1.09002 * 109.58861 * 293.68122 * 16 5 4 42 42 H 1.08996 * 109.58519 * 173.40013 * 16 5 4 43 43 H 1.09003 * 109.49975 * 65.24379 * 17 16 5 44 44 H 1.09000 * 109.49553 * 185.30642 * 17 16 5 45 45 H 1.09003 * 109.47169 * 184.99579 * 20 18 17 46 46 H 1.09001 * 109.47280 * 304.99784 * 20 18 17 47 47 H 0.97002 * 119.99289 * 359.97438 * 21 20 18 48 48 H 0.96995 * 119.99805 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0275 0.0000 4 6 2.0414 -0.7242 1.2494 5 7 3.5075 -0.8304 1.1711 6 6 4.2864 -0.3882 2.1781 7 8 3.7808 0.1021 3.1655 8 6 5.7856 -0.5032 2.0774 9 8 6.3848 0.0297 3.2602 10 6 7.7418 0.0026 3.3305 11 6 8.4009 0.5078 4.4470 12 6 9.7848 0.4528 4.4755 13 6 10.4611 -0.0868 3.3971 14 7 9.8064 -0.5522 2.3516 15 6 8.4898 -0.5238 2.2878 16 6 4.1053 -1.4268 -0.0313 17 6 3.5708 -0.6947 -1.2663 18 6 2.0408 -0.7227 -1.2486 19 1 1.6967 -1.7569 -1.2359 20 6 1.5037 -0.0221 -2.4982 21 7 1.8916 -0.7822 -3.6891 22 6 1.5207 -0.3437 -4.9321 23 1 0.9419 0.5624 -5.0347 24 6 1.8887 -1.0637 -6.0604 25 7 2.5936 -2.1682 -5.9354 26 14 1.3822 -0.4658 -7.7562 27 1 2.4298 0.4379 -8.2957 28 1 1.2180 -1.6302 -8.6630 29 1 0.0961 0.2702 -7.6579 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3632 0.5149 0.8895 32 1 -0.3633 0.5129 -0.8905 33 1 1.7638 -0.1587 2.1388 34 1 1.6052 -1.7220 1.2975 35 1 6.0634 -1.5518 1.9707 36 1 6.1354 0.0555 1.2093 37 1 7.8468 0.9287 5.2730 38 1 10.3293 0.8316 5.3277 39 1 11.5402 -0.1281 3.4114 40 1 7.9885 -0.9149 1.4147 41 1 3.8375 -2.4819 -0.0876 42 1 5.1898 -1.3269 0.0118 43 1 3.9159 0.3392 -1.2540 44 1 3.9338 -1.1887 -2.1675 45 1 0.4167 0.0367 -2.4429 46 1 1.9194 0.9838 -2.5578 47 1 2.4117 -1.5958 -3.5969 48 1 2.8511 -2.6710 -6.7239 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001185305044.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:35:13 Heat of formation + Delta-G solvation = -46.643445 kcal Electronic energy + Delta-G solvation = -28299.067078 eV Core-core repulsion = 24353.735305 eV Total energy + Delta-G solvation = -3945.331773 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.88311 -41.19663 -39.55853 -38.68105 -36.58194 -35.09819 -33.53600 -33.35532 -32.01505 -31.52064 -30.03224 -28.36111 -27.22161 -25.54002 -24.66968 -24.01766 -23.69539 -22.71997 -21.21937 -20.26606 -19.57410 -19.10832 -18.18464 -17.81198 -17.57410 -17.31983 -16.87186 -16.62298 -16.07185 -15.73486 -15.53571 -15.36681 -15.24645 -15.16102 -14.71747 -14.44843 -14.35179 -14.11299 -13.95777 -13.89413 -13.60821 -13.15889 -13.10848 -12.94207 -12.91586 -12.80169 -12.68576 -12.53726 -12.18158 -11.96353 -11.88800 -11.63710 -11.50613 -11.18508 -10.98172 -10.84800 -10.71852 -10.44385 -9.75022 -9.52773 -8.94692 -7.93842 -5.20793 0.11514 0.26177 1.33601 1.40021 1.48279 1.48774 1.57174 2.35303 2.56957 2.79927 3.23571 3.39818 3.50563 3.65694 3.69511 3.74406 3.83181 3.91595 3.97973 3.98736 3.99489 4.10023 4.23498 4.30955 4.39230 4.44914 4.52812 4.61726 4.63178 4.67054 4.74985 4.79384 4.85264 4.96683 5.00168 5.10320 5.13297 5.14040 5.19064 5.27090 5.36459 5.46905 5.51327 5.54028 5.59968 6.06497 6.25009 6.29618 6.94780 6.95920 7.36514 8.13215 8.37355 9.29401 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.013673 B = 0.002352 C = 0.002057 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2047.267960 B =11904.074878 C =13606.592952 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.087 4.087 3 H 0.065 0.935 4 C 0.122 3.878 5 N -0.601 5.601 6 C 0.518 3.482 7 O -0.569 6.569 8 C 0.037 3.963 9 O -0.308 6.308 10 C 0.064 3.936 11 C -0.118 4.118 12 C -0.121 4.121 13 C 0.051 3.949 14 N -0.478 5.478 15 C 0.006 3.994 16 C 0.106 3.894 17 C -0.123 4.123 18 C -0.080 4.080 19 H 0.071 0.929 20 C 0.156 3.844 21 N -0.741 5.741 22 C -0.243 4.243 23 H 0.070 0.930 24 C -0.072 4.072 25 N -0.966 5.966 26 Si 0.968 3.032 27 H -0.288 1.288 28 H -0.295 1.295 29 H -0.273 1.273 30 H 0.062 0.938 31 H 0.068 0.932 32 H 0.056 0.944 33 H 0.084 0.916 34 H 0.085 0.915 35 H 0.124 0.876 36 H 0.117 0.883 37 H 0.152 0.848 38 H 0.177 0.823 39 H 0.184 0.816 40 H 0.173 0.827 41 H 0.090 0.910 42 H 0.110 0.890 43 H 0.060 0.940 44 H 0.070 0.930 45 H 0.025 0.975 46 H 0.010 0.990 47 H 0.376 0.624 48 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.015 2.473 22.238 24.939 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.107 4.107 3 H 0.083 0.917 4 C 0.000 4.000 5 N -0.334 5.334 6 C 0.306 3.694 7 O -0.448 6.448 8 C -0.040 4.040 9 O -0.220 6.220 10 C 0.016 3.984 11 C -0.145 4.145 12 C -0.140 4.140 13 C -0.106 4.106 14 N -0.187 5.187 15 C -0.151 4.151 16 C -0.015 4.015 17 C -0.161 4.161 18 C -0.098 4.098 19 H 0.090 0.910 20 C 0.029 3.971 21 N -0.384 5.384 22 C -0.375 4.375 23 H 0.088 0.912 24 C -0.265 4.265 25 N -0.617 5.617 26 Si 0.797 3.203 27 H -0.215 1.215 28 H -0.222 1.222 29 H -0.198 1.198 30 H 0.081 0.919 31 H 0.087 0.913 32 H 0.074 0.926 33 H 0.102 0.898 34 H 0.103 0.897 35 H 0.142 0.858 36 H 0.135 0.865 37 H 0.170 0.830 38 H 0.194 0.806 39 H 0.201 0.799 40 H 0.190 0.810 41 H 0.109 0.891 42 H 0.128 0.872 43 H 0.078 0.922 44 H 0.089 0.911 45 H 0.043 0.957 46 H 0.028 0.972 47 H 0.209 0.791 48 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 10.952 2.566 22.088 24.787 hybrid contribution -0.716 0.272 -0.872 1.161 sum 10.236 2.839 21.216 23.726 Atomic orbital electron populations 1.21805 0.93497 1.02677 1.02286 1.21350 0.96830 0.99219 0.93277 0.91657 1.21761 0.78217 1.01670 0.98342 1.48168 1.07193 1.60072 1.17946 1.20351 0.89012 0.77525 0.82556 1.90710 1.76013 1.45744 1.32337 1.22748 0.90122 1.02811 0.88344 1.86116 1.17091 1.78297 1.40451 1.20313 0.82789 0.98371 0.96914 1.21317 0.95161 1.00603 0.97414 1.22398 0.92950 0.97923 1.00771 1.23247 1.02010 0.96191 0.89191 1.67568 1.09026 1.14994 1.27153 1.23185 0.90609 1.02291 0.99059 1.22030 0.99307 0.98022 0.82187 1.21847 0.95291 1.01108 0.97871 1.21230 0.95490 0.99760 0.93366 0.91016 1.20893 0.96756 0.93586 0.85824 1.42537 1.65294 1.29071 1.01476 1.19579 1.26769 1.05874 0.85287 0.91185 1.25471 1.01771 0.98030 1.01230 1.69782 1.44384 1.18413 1.29080 0.85223 0.77996 0.76773 0.80279 1.21528 1.22159 1.19764 0.91900 0.91327 0.92550 0.89784 0.89731 0.85806 0.86489 0.83031 0.80558 0.79931 0.81028 0.89140 0.87220 0.92153 0.91109 0.95720 0.97247 0.79083 0.94007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.17 8.82 71.98 0.63 -2.54 16 2 C -0.09 -2.05 2.42 -10.72 -0.03 -2.08 16 3 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 4 C 0.12 2.65 5.73 86.31 0.49 3.15 16 5 N -0.60 -12.64 2.98 -818.20 -2.44 -15.08 16 6 C 0.52 12.32 7.78 87.66 0.68 13.01 16 7 O -0.57 -18.47 15.93 16.00 0.25 -18.22 16 8 C 0.04 0.65 3.58 71.24 0.25 0.90 16 9 O -0.31 -6.89 9.68 -73.51 -0.71 -7.61 16 10 C 0.06 1.22 6.71 22.60 0.15 1.38 16 11 C -0.12 -1.88 10.13 22.56 0.23 -1.65 16 12 C -0.12 -1.38 10.11 22.34 0.23 -1.16 16 13 C 0.05 0.72 11.18 84.70 0.95 1.66 16 14 N -0.48 -9.32 10.36 -195.44 -2.02 -11.35 16 15 C 0.01 0.10 10.22 84.80 0.87 0.97 16 16 C 0.11 1.91 6.33 86.36 0.55 2.46 16 17 C -0.12 -3.14 5.25 30.67 0.16 -2.97 16 18 C -0.08 -2.24 1.73 -10.77 -0.02 -2.26 16 19 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 20 C 0.16 5.86 5.41 86.38 0.47 6.33 16 21 N -0.74 -35.84 5.32 -343.43 -1.83 -37.66 16 22 C -0.24 -13.29 9.99 84.03 0.84 -12.45 16 23 H 0.07 3.73 7.83 -2.91 -0.02 3.71 16 24 C -0.07 -4.08 5.50 84.86 0.47 -3.61 16 25 N -0.97 -57.31 13.06 21.65 0.28 -57.03 16 26 Si 0.97 45.46 29.55 68.60 2.03 47.49 16 27 H -0.29 -13.34 7.11 99.48 0.71 -12.63 16 28 H -0.30 -13.93 7.11 99.48 0.71 -13.22 16 29 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 30 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 31 H 0.07 1.28 8.14 -2.38 -0.02 1.26 16 32 H 0.06 1.38 6.29 -2.39 -0.02 1.37 16 33 H 0.08 2.01 7.02 -2.39 -0.02 1.99 16 34 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 35 H 0.12 1.41 7.48 -2.39 -0.02 1.39 16 36 H 0.12 1.54 7.23 -2.39 -0.02 1.52 16 37 H 0.15 2.05 8.06 -2.91 -0.02 2.03 16 38 H 0.18 0.70 8.06 -2.91 -0.02 0.68 16 39 H 0.18 1.43 8.06 -2.91 -0.02 1.41 16 40 H 0.17 2.34 6.32 -2.91 -0.02 2.32 16 41 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 42 H 0.11 1.33 5.93 -2.39 -0.01 1.31 16 43 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 44 H 0.07 2.15 7.15 -2.39 -0.02 2.13 16 45 H 0.02 0.95 6.14 -2.39 -0.01 0.93 16 46 H 0.01 0.38 8.14 -2.39 -0.02 0.36 16 47 H 0.38 18.99 6.85 -92.71 -0.63 18.36 16 48 H 0.25 14.49 8.31 -92.71 -0.77 13.72 16 Total: -1.00 -74.38 384.94 2.82 -71.56 By element: Atomic # 1 Polarization: 26.42 SS G_CDS: 0.34 Total: 26.76 kcal Atomic # 6 Polarization: -5.80 SS G_CDS: 6.92 Total: 1.13 kcal Atomic # 7 Polarization: -115.10 SS G_CDS: -6.01 Total: -121.11 kcal Atomic # 8 Polarization: -25.37 SS G_CDS: -0.46 Total: -25.82 kcal Atomic # 14 Polarization: 45.46 SS G_CDS: 2.03 Total: 47.49 kcal Total: -74.38 2.82 -71.56 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001185305044.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.918 kcal (2) G-P(sol) polarization free energy of solvation -74.380 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.462 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.818 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.562 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.643 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds