Wall clock time and date at job start Tue Mar 31 2020 17:31:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35664 * 116.99936 * 2 1 4 4 C 1.39279 * 119.62007 * 179.97438 * 3 2 1 5 5 C 1.38329 * 119.30788 * 179.97438 * 4 3 2 6 6 C 1.38777 * 118.56048 * 359.97438 * 5 4 3 7 7 C 1.39131 * 119.18796 * 359.97438 * 6 5 4 8 8 C 1.48146 * 119.69000 * 180.02562 * 7 6 5 9 9 O 1.21518 * 120.00292 * 337.78016 * 8 7 6 10 10 N 1.34775 * 119.99970 * 157.77817 * 8 7 6 11 11 C 1.46930 * 120.63277 * 180.19410 * 10 8 7 12 12 C 1.53193 * 108.77738 * 126.36650 * 11 10 8 13 13 C 1.53045 * 109.30855 * 54.63542 * 12 11 10 14 14 H 1.08999 * 109.46186 * 58.64157 * 13 12 11 15 15 C 1.53001 * 109.45945 * 178.61423 * 13 12 11 16 16 N 1.46499 * 109.47112 * 295.00292 * 15 13 12 17 17 C 1.36936 * 120.00445 * 179.97438 * 16 15 13 18 18 H 1.08000 * 119.99560 * 359.97438 * 17 16 15 19 19 C 1.38807 * 120.00378 * 179.97438 * 17 16 15 20 20 N 1.31624 * 120.00036 * 0.02562 * 19 17 16 21 21 Si 1.86804 * 120.00047 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.47093 * 60.00312 * 21 19 17 23 23 H 1.48501 * 109.47138 * 180.02562 * 21 19 17 24 24 H 1.48495 * 109.47132 * 300.00140 * 21 19 17 25 25 C 1.53036 * 109.53823 * 298.63343 * 13 12 11 26 26 H 1.08998 * 109.50315 * 301.38061 * 25 13 12 27 27 C 1.53005 * 109.49578 * 181.31884 * 25 13 12 28 28 C 1.46927 * 120.63094 * 359.91039 * 10 8 7 29 29 N 1.31906 * 119.61529 * 359.97203 * 3 2 1 30 30 H 1.08994 * 109.47770 * 300.00336 * 1 2 3 31 31 H 1.09001 * 109.47100 * 60.00921 * 1 2 3 32 32 H 1.09008 * 109.47112 * 180.02562 * 1 2 3 33 33 H 1.08007 * 120.34893 * 0.02562 * 4 3 2 34 34 H 1.08008 * 120.72015 * 179.72618 * 5 4 3 35 35 H 1.08007 * 120.40771 * 179.97438 * 6 5 4 36 36 H 1.08998 * 109.58351 * 246.15547 * 11 10 8 37 37 H 1.08996 * 109.58562 * 6.43601 * 11 10 8 38 38 H 1.08999 * 109.49529 * 174.58231 * 12 11 10 39 39 H 1.08997 * 109.49553 * 294.65446 * 12 11 10 40 40 H 1.09006 * 109.47141 * 54.99609 * 15 13 12 41 41 H 1.08993 * 109.47819 * 174.99929 * 15 13 12 42 42 H 0.97003 * 120.00371 * 359.97438 * 16 15 13 43 43 H 0.96998 * 119.99689 * 180.02562 * 20 19 17 44 44 H 1.08998 * 109.47007 * 60.00018 * 27 25 13 45 45 H 1.09004 * 109.47158 * 179.97438 * 27 25 13 46 46 H 1.08991 * 109.47224 * 299.99713 * 27 25 13 47 47 H 1.09007 * 109.58721 * 353.42382 * 28 10 8 48 48 H 1.09000 * 109.58515 * 113.84229 * 28 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2088 0.0000 4 6 3.4362 1.2725 0.0005 5 6 4.0575 2.5084 0.0000 6 6 3.2664 3.6486 -0.0016 7 6 1.8816 3.5137 -0.0032 8 6 1.0265 4.7235 -0.0055 9 8 1.4708 5.7824 0.3919 10 7 -0.2442 4.6496 -0.4484 11 6 -1.1032 5.8416 -0.4608 12 6 -1.6736 6.0237 -1.8709 13 6 -2.3794 4.7358 -2.3014 14 1 -3.1737 4.5024 -1.5923 15 6 -2.9804 4.9255 -3.6956 16 7 -4.0320 5.9439 -3.6396 17 6 -4.7163 6.2849 -4.7757 18 1 -4.4803 5.8032 -5.7132 19 6 -5.7131 7.2494 -4.7226 20 7 -6.0003 7.8367 -3.5802 21 14 -6.6469 7.7139 -6.2723 22 1 -7.3365 6.5149 -6.8128 23 1 -7.6508 8.7598 -5.9506 24 1 -5.6956 8.2367 -7.2856 25 6 -1.3707 3.5854 -2.3333 26 1 -0.5633 3.8284 -3.0241 27 6 -2.0702 2.3055 -2.7955 28 6 -0.7950 3.3769 -0.9338 29 7 1.3190 2.3102 -0.0006 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5137 -0.8901 32 1 -0.3634 -1.0277 0.0005 33 1 4.0240 0.3663 0.0005 34 1 5.1349 2.5844 0.0048 35 1 3.7201 4.6288 -0.0017 36 1 -1.9195 5.7111 0.2496 37 1 -0.5162 6.7179 -0.1859 38 1 -2.3876 6.8473 -1.8709 39 1 -0.8632 6.2446 -2.5654 40 1 -2.2008 5.2460 -4.3868 41 1 -3.4056 3.9827 -4.0395 42 1 -4.2437 6.3768 -2.7978 43 1 -6.6971 8.5105 -3.5430 44 1 -2.4808 2.4562 -3.7939 45 1 -1.3512 1.4865 -2.8185 46 1 -2.8766 2.0621 -2.1039 47 1 -0.0041 2.6278 -0.9733 48 1 -1.5857 3.0413 -0.2628 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001185410398.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:31:20 Heat of formation + Delta-G solvation = -11.193089 kcal Electronic energy + Delta-G solvation = -29473.433568 eV Core-core repulsion = 25529.639039 eV Total energy + Delta-G solvation = -3943.794530 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.41522 -39.92700 -38.43731 -37.68722 -35.04058 -33.46566 -33.18986 -31.95541 -31.17874 -30.27906 -27.86944 -26.96492 -26.50441 -24.97314 -23.52600 -23.34401 -22.30310 -21.36990 -20.41614 -19.51851 -18.30486 -17.86086 -17.03673 -16.62200 -16.42018 -16.13986 -16.03193 -15.31179 -14.82867 -14.62189 -14.53039 -14.15412 -13.96672 -13.81547 -13.60834 -13.50457 -13.11001 -12.92758 -12.61939 -12.56085 -12.29472 -12.15753 -12.05542 -11.74987 -11.65538 -11.43219 -10.99803 -10.83472 -10.79317 -10.62296 -10.48930 -10.31172 -10.23094 -10.15060 -9.94958 -9.68962 -9.21509 -8.94325 -8.83413 -8.54319 -6.88092 -5.74399 -3.02361 0.32330 0.83112 2.51038 2.66370 2.84954 3.42058 3.45120 3.49447 3.50504 3.72645 4.33635 4.53114 4.59668 4.60987 4.78329 4.89834 4.95110 4.99291 5.00994 5.04021 5.09953 5.26072 5.32580 5.44481 5.50657 5.53567 5.59409 5.69320 5.71054 5.73289 5.87065 5.92172 5.94334 6.03672 6.08327 6.12024 6.25619 6.30625 6.37631 6.47915 6.53444 6.70798 6.81701 6.86643 6.96687 7.19507 7.37826 7.71349 8.01751 8.45056 9.55884 10.14831 10.49347 11.48558 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.019930 B = 0.002701 C = 0.002494 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1404.579950 B =10364.183755 C =11223.880772 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.305 6.305 3 C 0.315 3.685 4 C -0.169 4.169 5 C -0.045 4.045 6 C -0.149 4.149 7 C 0.126 3.874 8 C 0.567 3.433 9 O -0.536 6.536 10 N -0.583 5.583 11 C 0.108 3.892 12 C -0.123 4.123 13 C -0.089 4.089 14 H 0.071 0.929 15 C 0.157 3.843 16 N -0.732 5.732 17 C -0.238 4.238 18 H 0.068 0.932 19 C -0.014 4.014 20 N -0.934 5.934 21 Si 0.906 3.094 22 H -0.287 1.287 23 H -0.291 1.291 24 H -0.287 1.287 25 C -0.101 4.101 26 H 0.068 0.932 27 C -0.145 4.145 28 C 0.081 3.919 29 N -0.506 5.506 30 H 0.062 0.938 31 H 0.064 0.936 32 H 0.099 0.901 33 H 0.147 0.853 34 H 0.150 0.850 35 H 0.150 0.850 36 H 0.070 0.930 37 H 0.091 0.909 38 H 0.089 0.911 39 H 0.062 0.938 40 H 0.015 0.985 41 H 0.023 0.977 42 H 0.383 0.617 43 H 0.255 0.745 44 H 0.068 0.932 45 H 0.047 0.953 46 H 0.056 0.944 47 H 0.135 0.865 48 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.440 -16.723 9.677 27.408 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.211 6.211 3 C 0.135 3.865 4 C -0.190 4.190 5 C -0.070 4.070 6 C -0.170 4.170 7 C -0.010 4.010 8 C 0.353 3.647 9 O -0.413 6.413 10 N -0.313 5.313 11 C -0.014 4.014 12 C -0.162 4.162 13 C -0.108 4.108 14 H 0.090 0.910 15 C 0.030 3.970 16 N -0.376 5.376 17 C -0.369 4.369 18 H 0.086 0.914 19 C -0.210 4.210 20 N -0.583 5.583 21 Si 0.737 3.263 22 H -0.213 1.213 23 H -0.217 1.217 24 H -0.213 1.213 25 C -0.121 4.121 26 H 0.087 0.913 27 C -0.202 4.202 28 C -0.041 4.041 29 N -0.234 5.234 30 H 0.080 0.920 31 H 0.083 0.917 32 H 0.118 0.882 33 H 0.164 0.836 34 H 0.168 0.832 35 H 0.168 0.832 36 H 0.089 0.911 37 H 0.109 0.891 38 H 0.108 0.892 39 H 0.081 0.919 40 H 0.033 0.967 41 H 0.041 0.959 42 H 0.217 0.783 43 H 0.065 0.935 44 H 0.087 0.913 45 H 0.066 0.934 46 H 0.075 0.925 47 H 0.151 0.849 48 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 18.774 -16.451 9.735 26.793 hybrid contribution -0.216 0.562 -0.669 0.900 sum 18.558 -15.889 9.065 26.059 Atomic orbital electron populations 1.23063 0.76710 1.03567 1.02934 1.86258 1.23269 1.23912 1.87697 1.19975 0.89580 0.84682 0.92281 1.21292 0.91964 0.99924 1.05809 1.21465 1.00984 0.90760 0.93802 1.21969 0.92825 1.00939 1.01290 1.20856 0.92336 0.90190 0.97640 1.17874 0.81496 0.86774 0.78566 1.90790 1.73070 1.29041 1.48354 1.48008 1.11025 1.11591 1.60708 1.21821 0.93567 0.87663 0.98332 1.21918 1.00455 0.99063 0.94722 1.21355 0.96676 0.93658 0.99152 0.91024 1.20751 0.90901 0.92552 0.92841 1.42376 1.40483 1.45182 1.09559 1.19179 1.12353 1.16748 0.88660 0.91378 1.24723 0.99818 0.99581 0.96897 1.69645 1.34594 1.30145 1.23928 0.86278 0.79534 0.77787 0.82653 1.21333 1.21702 1.21331 1.21440 0.98179 0.96005 0.96433 0.91311 1.21820 0.99998 0.95957 1.02465 1.22871 1.01003 0.86040 0.94195 1.67330 1.39039 0.98389 1.18643 0.91962 0.91698 0.88245 0.83552 0.83210 0.83196 0.91142 0.89068 0.89245 0.91886 0.96693 0.95905 0.78290 0.93498 0.91310 0.93358 0.92457 0.84886 0.91692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 10.32 101.05 1.04 1.27 16 2 O -0.30 -2.72 10.48 -18.69 -0.20 -2.92 16 3 C 0.32 3.01 7.49 -17.13 -0.13 2.88 16 4 C -0.17 -1.25 10.05 -39.16 -0.39 -1.64 16 5 C -0.04 -0.30 10.16 -39.35 -0.40 -0.70 16 6 C -0.15 -1.42 9.62 -39.05 -0.38 -1.79 16 7 C 0.13 1.49 6.44 -83.03 -0.53 0.96 16 8 C 0.57 8.16 7.61 -12.19 -0.09 8.07 16 9 O -0.54 -9.02 15.94 5.35 0.09 -8.93 16 10 N -0.58 -8.07 2.98 -174.03 -0.52 -8.58 16 11 C 0.11 1.56 6.44 -3.71 -0.02 1.54 16 12 C -0.12 -1.99 5.25 -26.61 -0.14 -2.13 16 13 C -0.09 -1.43 1.73 -90.58 -0.16 -1.59 16 14 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 15 C 0.16 3.14 5.41 -4.04 -0.02 3.11 16 16 N -0.73 -18.45 5.32 -59.91 -0.32 -18.77 16 17 C -0.24 -6.70 9.99 -15.06 -0.15 -6.85 16 18 H 0.07 1.87 7.83 -52.49 -0.41 1.45 16 19 C -0.01 -0.42 5.50 -17.43 -0.10 -0.51 16 20 N -0.93 -28.32 13.06 55.49 0.72 -27.60 16 21 Si 0.91 22.58 29.55 -169.99 -5.02 17.55 16 22 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 23 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 24 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 25 C -0.10 -1.32 2.40 -90.72 -0.22 -1.54 16 26 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 27 C -0.14 -1.67 8.82 37.16 0.33 -1.34 16 28 C 0.08 0.99 5.24 -3.94 -0.02 0.96 16 29 N -0.51 -5.52 5.30 -9.88 -0.05 -5.57 16 30 H 0.06 0.46 8.10 -51.93 -0.42 0.04 16 31 H 0.06 0.47 7.14 -51.93 -0.37 0.10 16 32 H 0.10 0.47 8.14 -51.92 -0.42 0.05 16 33 H 0.15 0.73 8.06 -52.48 -0.42 0.31 16 34 H 0.15 0.51 8.06 -52.48 -0.42 0.09 16 35 H 0.15 1.35 7.79 -52.48 -0.41 0.94 16 36 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 37 H 0.09 1.38 7.00 -51.93 -0.36 1.01 16 38 H 0.09 1.63 7.15 -51.93 -0.37 1.26 16 39 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 40 H 0.02 0.32 8.14 -51.93 -0.42 -0.11 16 41 H 0.02 0.46 6.14 -51.93 -0.32 0.14 16 42 H 0.38 10.09 6.85 -40.82 -0.28 9.81 16 43 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 44 H 0.07 0.88 6.29 -51.93 -0.33 0.55 16 45 H 0.05 0.46 8.05 -51.93 -0.42 0.04 16 46 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 47 H 0.13 1.52 3.04 -77.13 -0.23 1.29 16 48 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 LS Contribution 381.36 15.07 5.75 5.75 Total: -1.00 -33.11 381.36 -8.22 -41.33 By element: Atomic # 1 Polarization: 14.33 SS G_CDS: -7.29 Total: 7.04 kcal Atomic # 6 Polarization: 2.08 SS G_CDS: -1.38 Total: 0.70 kcal Atomic # 7 Polarization: -60.35 SS G_CDS: -0.16 Total: -60.52 kcal Atomic # 8 Polarization: -11.74 SS G_CDS: -0.11 Total: -11.85 kcal Atomic # 14 Polarization: 22.58 SS G_CDS: -5.02 Total: 17.55 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -33.11 -8.22 -41.33 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001185410398.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.141 kcal (2) G-P(sol) polarization free energy of solvation -33.114 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.973 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.220 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.334 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.193 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds