Wall clock time and date at job start Tue Mar 31 2020 17:31:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35664 * 116.99936 * 2 1 4 4 C 1.39279 * 119.62007 * 179.97438 * 3 2 1 5 5 C 1.38329 * 119.30788 * 179.97438 * 4 3 2 6 6 C 1.38777 * 118.56048 * 359.97438 * 5 4 3 7 7 C 1.39131 * 119.18796 * 359.97438 * 6 5 4 8 8 C 1.48146 * 119.69000 * 180.02562 * 7 6 5 9 9 O 1.21518 * 120.00292 * 337.78016 * 8 7 6 10 10 N 1.34775 * 119.99970 * 157.77817 * 8 7 6 11 11 C 1.46930 * 120.63277 * 180.19410 * 10 8 7 12 12 C 1.53193 * 108.77738 * 126.36650 * 11 10 8 13 13 C 1.53045 * 109.30855 * 54.63542 * 12 11 10 14 14 H 1.08999 * 109.46186 * 58.64157 * 13 12 11 15 15 C 1.53001 * 109.45945 * 178.61423 * 13 12 11 16 16 N 1.46499 * 109.47112 * 295.00292 * 15 13 12 17 17 C 1.36936 * 120.00445 * 179.97438 * 16 15 13 18 18 H 1.08000 * 119.99560 * 359.97438 * 17 16 15 19 19 C 1.38807 * 120.00378 * 179.97438 * 17 16 15 20 20 N 1.31624 * 120.00036 * 0.02562 * 19 17 16 21 21 Si 1.86804 * 120.00047 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.47093 * 60.00312 * 21 19 17 23 23 H 1.48501 * 109.47138 * 180.02562 * 21 19 17 24 24 H 1.48495 * 109.47132 * 300.00140 * 21 19 17 25 25 C 1.53036 * 109.53823 * 298.63343 * 13 12 11 26 26 H 1.08998 * 109.50315 * 301.38061 * 25 13 12 27 27 C 1.53005 * 109.49578 * 181.31884 * 25 13 12 28 28 C 1.46927 * 120.63094 * 359.91039 * 10 8 7 29 29 N 1.31906 * 119.61529 * 359.97203 * 3 2 1 30 30 H 1.08994 * 109.47770 * 300.00336 * 1 2 3 31 31 H 1.09001 * 109.47100 * 60.00921 * 1 2 3 32 32 H 1.09008 * 109.47112 * 180.02562 * 1 2 3 33 33 H 1.08007 * 120.34893 * 0.02562 * 4 3 2 34 34 H 1.08008 * 120.72015 * 179.72618 * 5 4 3 35 35 H 1.08007 * 120.40771 * 179.97438 * 6 5 4 36 36 H 1.08998 * 109.58351 * 246.15547 * 11 10 8 37 37 H 1.08996 * 109.58562 * 6.43601 * 11 10 8 38 38 H 1.08999 * 109.49529 * 174.58231 * 12 11 10 39 39 H 1.08997 * 109.49553 * 294.65446 * 12 11 10 40 40 H 1.09006 * 109.47141 * 54.99609 * 15 13 12 41 41 H 1.08993 * 109.47819 * 174.99929 * 15 13 12 42 42 H 0.97003 * 120.00371 * 359.97438 * 16 15 13 43 43 H 0.96998 * 119.99689 * 180.02562 * 20 19 17 44 44 H 1.08998 * 109.47007 * 60.00018 * 27 25 13 45 45 H 1.09004 * 109.47158 * 179.97438 * 27 25 13 46 46 H 1.08991 * 109.47224 * 299.99713 * 27 25 13 47 47 H 1.09007 * 109.58721 * 353.42382 * 28 10 8 48 48 H 1.09000 * 109.58515 * 113.84229 * 28 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2088 0.0000 4 6 3.4362 1.2725 0.0005 5 6 4.0575 2.5084 0.0000 6 6 3.2664 3.6486 -0.0016 7 6 1.8816 3.5137 -0.0032 8 6 1.0265 4.7235 -0.0055 9 8 1.4708 5.7824 0.3919 10 7 -0.2442 4.6496 -0.4484 11 6 -1.1032 5.8416 -0.4608 12 6 -1.6736 6.0237 -1.8709 13 6 -2.3794 4.7358 -2.3014 14 1 -3.1737 4.5024 -1.5923 15 6 -2.9804 4.9255 -3.6956 16 7 -4.0320 5.9439 -3.6396 17 6 -4.7163 6.2849 -4.7757 18 1 -4.4803 5.8032 -5.7132 19 6 -5.7131 7.2494 -4.7226 20 7 -6.0003 7.8367 -3.5802 21 14 -6.6469 7.7139 -6.2723 22 1 -7.3365 6.5149 -6.8128 23 1 -7.6508 8.7598 -5.9506 24 1 -5.6956 8.2367 -7.2856 25 6 -1.3707 3.5854 -2.3333 26 1 -0.5633 3.8284 -3.0241 27 6 -2.0702 2.3055 -2.7955 28 6 -0.7950 3.3769 -0.9338 29 7 1.3190 2.3102 -0.0006 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5137 -0.8901 32 1 -0.3634 -1.0277 0.0005 33 1 4.0240 0.3663 0.0005 34 1 5.1349 2.5844 0.0048 35 1 3.7201 4.6288 -0.0017 36 1 -1.9195 5.7111 0.2496 37 1 -0.5162 6.7179 -0.1859 38 1 -2.3876 6.8473 -1.8709 39 1 -0.8632 6.2446 -2.5654 40 1 -2.2008 5.2460 -4.3868 41 1 -3.4056 3.9827 -4.0395 42 1 -4.2437 6.3768 -2.7978 43 1 -6.6971 8.5105 -3.5430 44 1 -2.4808 2.4562 -3.7939 45 1 -1.3512 1.4865 -2.8185 46 1 -2.8766 2.0621 -2.1039 47 1 -0.0041 2.6278 -0.9733 48 1 -1.5857 3.0413 -0.2628 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001185410398.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:31:19 Heat of formation + Delta-G solvation = -32.825439 kcal Electronic energy + Delta-G solvation = -29474.371617 eV Core-core repulsion = 25529.639039 eV Total energy + Delta-G solvation = -3944.732579 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.22965 -40.90450 -39.46919 -38.56654 -36.64859 -34.92949 -34.06705 -33.27193 -32.28135 -31.66638 -28.78574 -28.15185 -27.57054 -26.08466 -25.20673 -23.99452 -23.48630 -22.77529 -21.50394 -20.71828 -19.23299 -19.03069 -18.68131 -17.38403 -17.12536 -17.03766 -16.88706 -16.73488 -16.34949 -15.77979 -15.56307 -15.33792 -15.28561 -15.12938 -14.66493 -14.47371 -14.34348 -14.21337 -13.93074 -13.74980 -13.23182 -13.15367 -12.99383 -12.92392 -12.81952 -12.70829 -12.61826 -12.25397 -12.16231 -11.98998 -11.90252 -11.69389 -11.59101 -11.44105 -11.36121 -10.98800 -10.89162 -10.13972 -9.80622 -9.54687 -8.97728 -7.94952 -5.23237 -0.41862 0.19751 1.46083 1.49186 1.55334 1.56136 1.79720 2.08537 2.55705 2.66384 2.89116 3.38098 3.53570 3.71349 3.80517 3.81777 3.90988 4.00567 4.01680 4.20292 4.23653 4.26000 4.41295 4.45959 4.47804 4.50291 4.53991 4.61007 4.67626 4.77959 4.82258 4.85154 4.92868 4.96482 4.99615 5.08991 5.11447 5.13647 5.17303 5.23958 5.34601 5.39227 5.46740 5.53886 5.56374 6.12061 6.26332 6.27724 6.51964 6.94548 7.33732 8.10566 8.34126 9.28408 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.019930 B = 0.002701 C = 0.002494 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1404.579950 B =10364.183755 C =11223.880772 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.309 6.309 3 C 0.301 3.699 4 C -0.157 4.157 5 C -0.032 4.032 6 C -0.151 4.151 7 C 0.097 3.903 8 C 0.563 3.437 9 O -0.570 6.570 10 N -0.586 5.586 11 C 0.115 3.885 12 C -0.115 4.115 13 C -0.079 4.079 14 H 0.068 0.932 15 C 0.158 3.842 16 N -0.743 5.743 17 C -0.246 4.246 18 H 0.073 0.927 19 C -0.075 4.075 20 N -0.969 5.969 21 Si 0.973 3.027 22 H -0.277 1.277 23 H -0.295 1.295 24 H -0.280 1.280 25 C -0.092 4.092 26 H 0.062 0.938 27 C -0.140 4.140 28 C 0.087 3.913 29 N -0.518 5.518 30 H 0.056 0.944 31 H 0.062 0.938 32 H 0.123 0.877 33 H 0.177 0.823 34 H 0.191 0.809 35 H 0.150 0.850 36 H 0.078 0.922 37 H 0.082 0.918 38 H 0.063 0.937 39 H 0.053 0.947 40 H 0.008 0.992 41 H 0.031 0.969 42 H 0.374 0.626 43 H 0.251 0.749 44 H 0.055 0.945 45 H 0.074 0.926 46 H 0.062 0.938 47 H 0.149 0.851 48 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.198 -19.423 9.387 30.244 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.216 6.216 3 C 0.120 3.880 4 C -0.177 4.177 5 C -0.056 4.056 6 C -0.172 4.172 7 C -0.037 4.037 8 C 0.350 3.650 9 O -0.450 6.450 10 N -0.316 5.316 11 C -0.007 4.007 12 C -0.153 4.153 13 C -0.098 4.098 14 H 0.086 0.914 15 C 0.032 3.968 16 N -0.386 5.386 17 C -0.378 4.378 18 H 0.091 0.909 19 C -0.267 4.267 20 N -0.620 5.620 21 Si 0.802 3.198 22 H -0.203 1.203 23 H -0.221 1.221 24 H -0.206 1.206 25 C -0.112 4.112 26 H 0.080 0.920 27 C -0.198 4.198 28 C -0.035 4.035 29 N -0.246 5.246 30 H 0.074 0.926 31 H 0.081 0.919 32 H 0.141 0.859 33 H 0.194 0.806 34 H 0.208 0.792 35 H 0.167 0.833 36 H 0.096 0.904 37 H 0.100 0.900 38 H 0.081 0.919 39 H 0.071 0.929 40 H 0.026 0.974 41 H 0.049 0.951 42 H 0.206 0.794 43 H 0.060 0.940 44 H 0.074 0.926 45 H 0.093 0.907 46 H 0.081 0.919 47 H 0.165 0.835 48 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 20.551 -19.199 9.424 29.661 hybrid contribution -0.659 1.307 -0.563 1.568 sum 19.892 -17.892 8.862 28.184 Atomic orbital electron populations 1.23217 0.75957 1.05050 1.02503 1.86268 1.24100 1.23508 1.87691 1.20323 0.90607 0.84406 0.92667 1.21728 0.91245 1.01309 1.03434 1.21891 1.02641 0.89326 0.91771 1.22141 0.92138 1.02183 1.00763 1.20526 0.92779 0.89541 1.00872 1.18351 0.81532 0.87438 0.77641 1.90755 1.73718 1.30637 1.49878 1.48091 1.11092 1.11682 1.60726 1.21635 0.93787 0.88168 0.97160 1.21764 0.99430 0.98372 0.95732 1.21249 0.97175 0.94821 0.96528 0.91389 1.20889 0.89496 0.91277 0.95163 1.42581 1.41371 1.46171 1.08497 1.19586 1.12213 1.16346 0.89640 0.90901 1.25551 1.01198 1.00043 0.99934 1.69807 1.35295 1.30886 1.25982 0.85225 0.78063 0.77457 0.79099 1.20253 1.22106 1.20589 1.21376 0.97080 0.95528 0.97202 0.91981 1.21781 1.00658 0.95726 1.01630 1.22977 1.01581 0.85580 0.93347 1.67060 1.39747 0.98421 1.19366 0.92565 0.91917 0.85898 0.80599 0.79216 0.83251 0.90355 0.89978 0.91869 0.92855 0.97400 0.95095 0.79351 0.94004 0.92614 0.90736 0.91863 0.83475 0.90960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 10.32 113.37 1.17 1.49 16 2 O -0.31 -4.71 10.48 -89.80 -0.94 -5.66 16 3 C 0.30 5.00 7.49 84.93 0.64 5.64 16 4 C -0.16 -1.73 10.05 22.54 0.23 -1.50 16 5 C -0.03 -0.31 10.16 22.42 0.23 -0.09 16 6 C -0.15 -2.62 9.62 22.61 0.22 -2.40 16 7 C 0.10 2.24 6.44 41.84 0.27 2.51 16 8 C 0.56 16.43 7.61 86.88 0.66 17.09 16 9 O -0.57 -19.85 15.94 -3.77 -0.06 -19.91 16 10 N -0.59 -16.38 2.98 -822.80 -2.45 -18.83 16 11 C 0.11 3.45 6.44 86.36 0.56 4.01 16 12 C -0.11 -3.87 5.25 30.67 0.16 -3.71 16 13 C -0.08 -2.56 1.73 -10.77 -0.02 -2.58 16 14 H 0.07 2.28 8.14 -2.39 -0.02 2.26 16 15 C 0.16 6.40 5.41 86.38 0.47 6.86 16 16 N -0.74 -38.36 5.32 -343.46 -1.83 -40.19 16 17 C -0.25 -13.99 9.99 84.03 0.84 -13.15 16 18 H 0.07 3.99 7.83 -2.91 -0.02 3.96 16 19 C -0.07 -4.37 5.50 84.86 0.47 -3.90 16 20 N -0.97 -60.01 13.06 21.65 0.28 -59.72 16 21 Si 0.97 46.73 29.55 68.60 2.03 48.76 16 22 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 23 H -0.29 -14.23 7.11 99.48 0.71 -13.53 16 24 H -0.28 -13.00 7.11 99.48 0.71 -12.30 16 25 C -0.09 -2.35 2.40 -10.86 -0.03 -2.37 16 26 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 27 C -0.14 -3.00 8.82 71.98 0.63 -2.36 16 28 C 0.09 2.03 5.24 86.22 0.45 2.48 16 29 N -0.52 -10.52 5.30 -298.21 -1.58 -12.10 16 30 H 0.06 0.73 8.10 -2.39 -0.02 0.71 16 31 H 0.06 0.76 7.14 -2.39 -0.02 0.75 16 32 H 0.12 0.83 8.14 -2.38 -0.02 0.81 16 33 H 0.18 0.90 8.06 -2.91 -0.02 0.87 16 34 H 0.19 0.34 8.06 -2.91 -0.02 0.32 16 35 H 0.15 2.55 7.79 -2.91 -0.02 2.53 16 36 H 0.08 2.22 8.14 -2.39 -0.02 2.20 16 37 H 0.08 2.63 7.00 -2.39 -0.02 2.61 16 38 H 0.06 2.46 7.15 -2.39 -0.02 2.44 16 39 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 40 H 0.01 0.34 8.14 -2.38 -0.02 0.32 16 41 H 0.03 1.23 6.14 -2.39 -0.01 1.21 16 42 H 0.37 20.44 6.85 -92.71 -0.63 19.80 16 43 H 0.25 15.10 8.31 -92.71 -0.77 14.33 16 44 H 0.05 1.35 6.29 -2.39 -0.02 1.33 16 45 H 0.07 1.22 8.05 -2.39 -0.02 1.20 16 46 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 47 H 0.15 3.17 3.04 -52.14 -0.16 3.01 16 48 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 Total: -1.00 -73.01 381.36 2.58 -70.43 By element: Atomic # 1 Polarization: 29.02 SS G_CDS: 0.19 Total: 29.21 kcal Atomic # 6 Polarization: 1.08 SS G_CDS: 6.94 Total: 8.02 kcal Atomic # 7 Polarization: -125.27 SS G_CDS: -5.58 Total: -130.85 kcal Atomic # 8 Polarization: -24.56 SS G_CDS: -1.00 Total: -25.56 kcal Atomic # 14 Polarization: 46.73 SS G_CDS: 2.03 Total: 48.76 kcal Total: -73.01 2.58 -70.43 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001185410398.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.605 kcal (2) G-P(sol) polarization free energy of solvation -73.011 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.580 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.430 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds