Wall clock time and date at job start Tue Mar 31 2020 17:34:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09001 * 109.49622 * 2 1 4 4 C 1.53188 * 109.50026 * 120.06657 * 2 1 3 5 5 N 1.46923 * 108.77611 * 65.31834 * 4 2 1 6 6 C 1.34781 * 120.63037 * 233.58768 * 5 4 2 7 7 O 1.21609 * 119.99835 * 355.73914 * 6 5 4 8 8 C 1.47392 * 120.00495 * 175.74114 * 6 5 4 9 9 C 1.47113 * 128.56306 * 46.52969 * 8 6 5 10 10 N 1.30014 * 105.32755 * 179.87566 * 9 8 6 11 11 O 1.20664 * 112.30182 * 0.42201 * 10 9 8 12 12 C 1.33489 * 113.15628 * 359.71623 * 11 10 9 13 13 C 1.50696 * 126.82668 * 180.02562 * 12 11 10 14 14 C 1.53002 * 117.50128 * 8.72053 * 13 12 11 15 15 C 1.53005 * 117.50042 * 300.05911 * 13 12 11 16 16 C 1.46923 * 118.74274 * 53.60851 * 5 4 2 17 17 C 1.53197 * 108.77259 * 306.39317 * 16 5 4 18 18 C 1.53034 * 109.31346 * 54.63449 * 17 16 5 19 19 H 1.09001 * 109.46153 * 58.65106 * 18 17 16 20 20 C 1.53003 * 109.46331 * 178.61348 * 18 17 16 21 21 N 1.46499 * 109.46896 * 295.07249 * 20 18 17 22 22 C 1.36938 * 120.00055 * 179.97438 * 21 20 18 23 23 H 1.08003 * 119.99673 * 0.02562 * 22 21 20 24 24 C 1.38815 * 120.00012 * 179.97438 * 22 21 20 25 25 N 1.31613 * 120.00156 * 0.02562 * 24 22 21 26 26 Si 1.86797 * 119.99714 * 179.97438 * 24 22 21 27 27 H 1.48507 * 109.47401 * 60.00394 * 26 24 22 28 28 H 1.48497 * 109.47215 * 180.02562 * 26 24 22 29 29 H 1.48500 * 109.47329 * 300.00509 * 26 24 22 30 30 H 1.08996 * 109.46733 * 299.93368 * 1 2 3 31 31 H 1.08997 * 109.47043 * 59.93687 * 1 2 3 32 32 H 1.09003 * 109.46942 * 179.97438 * 1 2 3 33 33 H 1.09000 * 109.58454 * 185.10415 * 4 2 1 34 34 H 1.08999 * 109.58375 * 305.52612 * 4 2 1 35 35 H 1.07998 * 127.33197 * 359.97438 * 9 8 6 36 36 H 1.09008 * 115.54931 * 154.39411 * 13 12 11 37 37 H 1.09000 * 117.49462 * 0.02562 * 14 13 12 38 38 H 1.09003 * 117.49707 * 145.02146 * 14 13 12 39 39 H 1.08993 * 117.49951 * 214.98369 * 15 13 12 40 40 H 1.08996 * 117.49424 * 359.97438 * 15 13 12 41 41 H 1.08998 * 109.58539 * 66.18020 * 16 5 4 42 42 H 1.09003 * 109.58821 * 186.60730 * 16 5 4 43 43 H 1.09000 * 109.49562 * 174.58662 * 17 16 5 44 44 H 1.08999 * 109.49867 * 294.64955 * 17 16 5 45 45 H 1.09006 * 109.46558 * 55.06282 * 20 18 17 46 46 H 1.08996 * 109.47478 * 175.06683 * 20 18 17 47 47 H 0.97004 * 120.00226 * 359.97438 * 21 20 18 48 48 H 0.96998 * 119.99797 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0414 -0.7235 1.2497 5 7 1.6517 -2.1378 1.1701 6 6 0.9750 -2.7215 2.1790 7 8 0.7488 -2.0997 3.1993 8 6 0.5090 -4.1135 2.0457 9 6 1.2527 -5.2873 1.5626 10 7 0.4149 -6.2788 1.6356 11 8 -0.6650 -5.9363 2.0510 12 6 -0.7287 -4.6338 2.3362 13 6 -1.9211 -3.8835 2.8710 14 6 -3.1333 -4.7059 3.3127 15 6 -3.1946 -3.8837 2.0229 16 6 2.0141 -2.9040 -0.0300 17 6 1.5031 -2.1561 -1.2655 18 6 2.0408 -0.7234 -1.2482 19 1 3.1305 -0.7447 -1.2352 20 6 1.5607 0.0164 -2.4985 21 7 2.1466 -0.6049 -3.6887 22 6 1.8577 -0.1096 -4.9323 23 1 1.1981 0.7394 -5.0354 24 6 2.4133 -0.6980 -6.0601 25 7 3.2175 -1.7323 -5.9343 26 14 2.0185 -0.0227 -7.7564 27 1 2.4552 1.3943 -7.8391 28 1 2.7313 -0.8216 -8.7854 29 1 0.5548 -0.1043 -7.9933 30 1 -0.3633 0.5128 0.8906 31 1 -0.3633 0.5148 -0.8894 32 1 -0.3633 -1.0277 -0.0005 33 1 3.1276 -0.6459 1.2980 34 1 1.6009 -0.2725 2.1389 35 1 2.2769 -5.3188 1.2216 36 1 -1.6931 -2.9797 3.4363 37 1 -3.0681 -5.7897 3.2167 38 1 -3.7030 -4.3430 4.1682 39 1 -3.8044 -2.9804 2.0304 40 1 -3.1696 -4.4263 1.0779 41 1 3.0981 -3.0043 -0.0860 42 1 1.5555 -3.8919 0.0148 43 1 1.8481 -2.6634 -2.1664 44 1 0.4133 -2.1363 -1.2538 45 1 0.4736 -0.0383 -2.5579 46 1 1.8695 1.0603 -2.4440 47 1 2.7393 -1.3672 -3.5960 48 1 3.6054 -2.1436 -6.7224 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001185410981.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:34:04 Heat of formation + Delta-G solvation = 64.547224 kcal Electronic energy + Delta-G solvation = -29554.452639 eV Core-core repulsion = 25613.942455 eV Total energy + Delta-G solvation = -3940.510183 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -45.16185 -40.42364 -38.20160 -37.64498 -35.04980 -34.19882 -33.16513 -31.94041 -31.64197 -30.36169 -27.25474 -27.04187 -24.77384 -24.44151 -23.50632 -23.05874 -22.79528 -21.74365 -21.14718 -19.78917 -18.49656 -18.00741 -17.86038 -17.15005 -16.91183 -16.11968 -15.97351 -15.40322 -15.00186 -14.71083 -14.31841 -14.15156 -14.05128 -13.78706 -13.66835 -13.53050 -12.95623 -12.63754 -12.56346 -12.44334 -12.22637 -11.99277 -11.84187 -11.64619 -11.53583 -11.44974 -11.07775 -10.95227 -10.87013 -10.78834 -10.61117 -10.41677 -10.33434 -10.22466 -10.05124 -9.89931 -9.65906 -9.44802 -8.87458 -8.67011 -6.92803 -5.78599 -3.06568 0.88943 1.59240 2.44795 2.57364 2.96956 3.41564 3.42548 3.47181 3.47950 3.89458 3.97046 4.31351 4.37155 4.48986 4.56711 4.58947 4.77070 4.91347 4.96230 5.00069 5.10307 5.17262 5.21224 5.24577 5.42431 5.45780 5.49829 5.52822 5.59044 5.65948 5.68494 5.68625 5.74764 5.80816 5.83579 6.02163 6.05371 6.16266 6.25721 6.34013 6.43035 6.44001 6.62804 6.78457 6.91311 7.23971 7.68034 7.90922 7.97144 8.40903 9.51971 10.10189 10.44627 11.44344 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.014539 B = 0.002878 C = 0.002759 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1925.359133 B = 9728.146333 C =10146.119049 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.099 4.099 3 H 0.084 0.916 4 C 0.119 3.881 5 N -0.592 5.592 6 C 0.601 3.399 7 O -0.538 6.538 8 C -0.247 4.247 9 C 0.023 3.977 10 N -0.350 5.350 11 O 0.093 5.907 12 C 0.066 3.934 13 C -0.094 4.094 14 C -0.162 4.162 15 C -0.157 4.157 16 C 0.098 3.902 17 C -0.126 4.126 18 C -0.089 4.089 19 H 0.072 0.928 20 C 0.159 3.841 21 N -0.732 5.732 22 C -0.239 4.239 23 H 0.069 0.931 24 C -0.014 4.014 25 N -0.935 5.935 26 Si 0.906 3.094 27 H -0.286 1.286 28 H -0.291 1.291 29 H -0.286 1.286 30 H 0.048 0.952 31 H 0.062 0.938 32 H 0.054 0.946 33 H 0.070 0.930 34 H 0.092 0.908 35 H 0.203 0.797 36 H 0.147 0.853 37 H 0.105 0.895 38 H 0.108 0.892 39 H 0.110 0.890 40 H 0.102 0.898 41 H 0.074 0.926 42 H 0.084 0.916 43 H 0.088 0.912 44 H 0.068 0.932 45 H 0.021 0.979 46 H 0.017 0.983 47 H 0.383 0.617 48 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.345 -4.687 20.091 22.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.118 4.118 3 H 0.102 0.898 4 C -0.003 4.003 5 N -0.324 5.324 6 C 0.388 3.612 7 O -0.416 6.416 8 C -0.254 4.254 9 C -0.159 4.159 10 N -0.055 5.055 11 O 0.032 5.968 12 C 0.003 3.997 13 C -0.113 4.113 14 C -0.199 4.199 15 C -0.194 4.194 16 C -0.025 4.025 17 C -0.164 4.164 18 C -0.108 4.108 19 H 0.090 0.910 20 C 0.031 3.969 21 N -0.376 5.376 22 C -0.370 4.370 23 H 0.087 0.913 24 C -0.209 4.209 25 N -0.583 5.583 26 Si 0.737 3.263 27 H -0.213 1.213 28 H -0.217 1.217 29 H -0.213 1.213 30 H 0.067 0.933 31 H 0.081 0.919 32 H 0.073 0.927 33 H 0.088 0.912 34 H 0.110 0.890 35 H 0.220 0.780 36 H 0.165 0.835 37 H 0.123 0.877 38 H 0.127 0.873 39 H 0.128 0.872 40 H 0.121 0.879 41 H 0.092 0.908 42 H 0.102 0.898 43 H 0.107 0.893 44 H 0.086 0.914 45 H 0.039 0.961 46 H 0.035 0.965 47 H 0.217 0.783 48 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -8.460 -5.569 20.201 22.598 hybrid contribution 0.517 0.819 -1.107 1.471 sum -7.943 -4.750 19.094 21.218 Atomic orbital electron populations 1.21865 0.94901 1.01945 1.01523 1.21485 0.96694 0.99538 0.94107 0.89825 1.21741 0.99689 0.79520 0.99376 1.47928 1.54966 1.11767 1.17784 1.16814 0.77563 0.83765 0.83024 1.90781 1.57712 1.64524 1.28583 1.21926 0.95067 0.96298 1.12115 1.26407 1.01866 0.86888 1.00715 1.73679 0.92436 1.23518 1.15881 1.84535 1.28124 1.23316 1.60780 1.23587 0.95891 0.83725 0.96516 1.20651 0.84249 1.00839 1.05590 1.23111 0.98598 0.99228 0.99004 1.23158 0.97082 1.03199 0.95969 1.22104 1.00593 0.95393 0.84367 1.21959 1.01398 0.96056 0.97028 1.21312 1.00299 0.94590 0.94552 0.90959 1.20708 0.95903 0.94640 0.85635 1.42371 1.56856 1.37560 1.00836 1.19181 1.23114 1.10858 0.83855 0.91348 1.24716 1.00063 0.98373 0.97796 1.69634 1.35668 1.24338 1.28693 0.86282 0.77656 0.78065 0.84271 1.21301 1.21699 1.21303 0.93304 0.91868 0.92651 0.91206 0.88991 0.78000 0.83523 0.87661 0.87344 0.87153 0.87918 0.90751 0.89812 0.89349 0.91370 0.96113 0.96473 0.78321 0.93490 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.79 8.38 37.16 0.31 -1.48 16 2 C -0.10 -1.21 2.72 -90.50 -0.25 -1.45 16 3 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 4 C 0.12 1.37 5.82 -3.71 -0.02 1.35 16 5 N -0.59 -7.08 2.41 -174.05 -0.42 -7.50 16 6 C 0.60 7.87 7.52 -12.53 -0.09 7.78 16 7 O -0.54 -8.30 16.06 5.27 0.08 -8.21 16 8 C -0.25 -2.94 5.47 -102.89 -0.56 -3.50 16 9 C 0.02 0.26 10.11 -14.72 -0.15 0.11 16 10 N -0.35 -4.25 12.01 31.81 0.38 -3.87 16 11 O 0.09 1.07 10.86 18.66 0.20 1.28 16 12 C 0.07 0.73 7.00 -34.63 -0.24 0.49 16 13 C -0.09 -0.84 6.14 -91.77 -0.56 -1.40 16 14 C -0.16 -1.06 10.19 -26.69 -0.27 -1.33 16 15 C -0.16 -1.12 10.24 -26.69 -0.27 -1.39 16 16 C 0.10 1.12 6.01 -3.71 -0.02 1.10 16 17 C -0.13 -1.78 4.90 -26.61 -0.13 -1.91 16 18 C -0.09 -1.31 1.96 -90.58 -0.18 -1.48 16 19 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 20 C 0.16 3.03 5.19 -4.04 -0.02 3.01 16 21 N -0.73 -17.83 5.32 -59.91 -0.32 -18.15 16 22 C -0.24 -6.57 9.99 -15.06 -0.15 -6.72 16 23 H 0.07 1.84 7.83 -52.48 -0.41 1.43 16 24 C -0.01 -0.39 5.50 -17.43 -0.10 -0.48 16 25 N -0.93 -27.73 13.06 55.49 0.72 -27.00 16 26 Si 0.91 22.20 29.55 -169.99 -5.02 17.18 16 27 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 28 H -0.29 -7.19 7.11 56.52 0.40 -6.78 16 29 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 30 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.06 0.82 6.59 -51.93 -0.34 0.48 16 32 H 0.05 0.72 5.97 -51.93 -0.31 0.41 16 33 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.09 1.10 7.03 -51.93 -0.36 0.73 16 35 H 0.20 1.64 7.64 -52.49 -0.40 1.24 16 36 H 0.15 1.40 7.66 -51.92 -0.40 1.00 16 37 H 0.10 0.67 8.02 -51.93 -0.42 0.25 16 38 H 0.11 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.11 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.10 0.77 8.14 -51.93 -0.42 0.34 16 41 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 42 H 0.08 0.90 4.38 -51.93 -0.23 0.67 16 43 H 0.09 1.45 7.15 -51.93 -0.37 1.08 16 44 H 0.07 1.00 6.34 -51.93 -0.33 0.67 16 45 H 0.02 0.41 6.74 -51.93 -0.35 0.06 16 46 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 47 H 0.38 9.70 6.84 -40.82 -0.28 9.42 16 48 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 LS Contribution 381.50 15.07 5.75 5.75 Total: -1.00 -32.07 381.50 -8.47 -40.54 By element: Atomic # 1 Polarization: 14.47 SS G_CDS: -7.14 Total: 7.33 kcal Atomic # 6 Polarization: -4.63 SS G_CDS: -2.71 Total: -7.34 kcal Atomic # 7 Polarization: -56.89 SS G_CDS: 0.37 Total: -56.52 kcal Atomic # 8 Polarization: -7.22 SS G_CDS: 0.29 Total: -6.94 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -5.02 Total: 17.18 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -32.07 -8.47 -40.54 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001185410981.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.091 kcal (2) G-P(sol) polarization free energy of solvation -32.074 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.017 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.544 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.547 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds