Wall clock time and date at job start Tue Mar 31 2020 17:34:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09001 * 109.49622 * 2 1 4 4 C 1.53188 * 109.50026 * 120.06657 * 2 1 3 5 5 N 1.46923 * 108.77611 * 65.31834 * 4 2 1 6 6 C 1.34781 * 120.63037 * 233.58768 * 5 4 2 7 7 O 1.21609 * 119.99835 * 355.73914 * 6 5 4 8 8 C 1.47392 * 120.00495 * 175.74114 * 6 5 4 9 9 C 1.47113 * 128.56306 * 46.52969 * 8 6 5 10 10 N 1.30014 * 105.32755 * 179.87566 * 9 8 6 11 11 O 1.20664 * 112.30182 * 0.42201 * 10 9 8 12 12 C 1.33489 * 113.15628 * 359.71623 * 11 10 9 13 13 C 1.50696 * 126.82668 * 180.02562 * 12 11 10 14 14 C 1.53002 * 117.50128 * 8.72053 * 13 12 11 15 15 C 1.53005 * 117.50042 * 300.05911 * 13 12 11 16 16 C 1.46923 * 118.74274 * 53.60851 * 5 4 2 17 17 C 1.53197 * 108.77259 * 306.39317 * 16 5 4 18 18 C 1.53034 * 109.31346 * 54.63449 * 17 16 5 19 19 H 1.09001 * 109.46153 * 58.65106 * 18 17 16 20 20 C 1.53003 * 109.46331 * 178.61348 * 18 17 16 21 21 N 1.46499 * 109.46896 * 295.07249 * 20 18 17 22 22 C 1.36938 * 120.00055 * 179.97438 * 21 20 18 23 23 H 1.08003 * 119.99673 * 0.02562 * 22 21 20 24 24 C 1.38815 * 120.00012 * 179.97438 * 22 21 20 25 25 N 1.31613 * 120.00156 * 0.02562 * 24 22 21 26 26 Si 1.86797 * 119.99714 * 179.97438 * 24 22 21 27 27 H 1.48507 * 109.47401 * 60.00394 * 26 24 22 28 28 H 1.48497 * 109.47215 * 180.02562 * 26 24 22 29 29 H 1.48500 * 109.47329 * 300.00509 * 26 24 22 30 30 H 1.08996 * 109.46733 * 299.93368 * 1 2 3 31 31 H 1.08997 * 109.47043 * 59.93687 * 1 2 3 32 32 H 1.09003 * 109.46942 * 179.97438 * 1 2 3 33 33 H 1.09000 * 109.58454 * 185.10415 * 4 2 1 34 34 H 1.08999 * 109.58375 * 305.52612 * 4 2 1 35 35 H 1.07998 * 127.33197 * 359.97438 * 9 8 6 36 36 H 1.09008 * 115.54931 * 154.39411 * 13 12 11 37 37 H 1.09000 * 117.49462 * 0.02562 * 14 13 12 38 38 H 1.09003 * 117.49707 * 145.02146 * 14 13 12 39 39 H 1.08993 * 117.49951 * 214.98369 * 15 13 12 40 40 H 1.08996 * 117.49424 * 359.97438 * 15 13 12 41 41 H 1.08998 * 109.58539 * 66.18020 * 16 5 4 42 42 H 1.09003 * 109.58821 * 186.60730 * 16 5 4 43 43 H 1.09000 * 109.49562 * 174.58662 * 17 16 5 44 44 H 1.08999 * 109.49867 * 294.64955 * 17 16 5 45 45 H 1.09006 * 109.46558 * 55.06282 * 20 18 17 46 46 H 1.08996 * 109.47478 * 175.06683 * 20 18 17 47 47 H 0.97004 * 120.00226 * 359.97438 * 21 20 18 48 48 H 0.96998 * 119.99797 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0414 -0.7235 1.2497 5 7 1.6517 -2.1378 1.1701 6 6 0.9750 -2.7215 2.1790 7 8 0.7488 -2.0997 3.1993 8 6 0.5090 -4.1135 2.0457 9 6 1.2527 -5.2873 1.5626 10 7 0.4149 -6.2788 1.6356 11 8 -0.6650 -5.9363 2.0510 12 6 -0.7287 -4.6338 2.3362 13 6 -1.9211 -3.8835 2.8710 14 6 -3.1333 -4.7059 3.3127 15 6 -3.1946 -3.8837 2.0229 16 6 2.0141 -2.9040 -0.0300 17 6 1.5031 -2.1561 -1.2655 18 6 2.0408 -0.7234 -1.2482 19 1 3.1305 -0.7447 -1.2352 20 6 1.5607 0.0164 -2.4985 21 7 2.1466 -0.6049 -3.6887 22 6 1.8577 -0.1096 -4.9323 23 1 1.1981 0.7394 -5.0354 24 6 2.4133 -0.6980 -6.0601 25 7 3.2175 -1.7323 -5.9343 26 14 2.0185 -0.0227 -7.7564 27 1 2.4552 1.3943 -7.8391 28 1 2.7313 -0.8216 -8.7854 29 1 0.5548 -0.1043 -7.9933 30 1 -0.3633 0.5128 0.8906 31 1 -0.3633 0.5148 -0.8894 32 1 -0.3633 -1.0277 -0.0005 33 1 3.1276 -0.6459 1.2980 34 1 1.6009 -0.2725 2.1389 35 1 2.2769 -5.3188 1.2216 36 1 -1.6931 -2.9797 3.4363 37 1 -3.0681 -5.7897 3.2167 38 1 -3.7030 -4.3430 4.1682 39 1 -3.8044 -2.9804 2.0304 40 1 -3.1696 -4.4263 1.0779 41 1 3.0981 -3.0043 -0.0860 42 1 1.5555 -3.8919 0.0148 43 1 1.8481 -2.6634 -2.1664 44 1 0.4133 -2.1363 -1.2538 45 1 0.4736 -0.0383 -2.5579 46 1 1.8695 1.0603 -2.4440 47 1 2.7393 -1.3672 -3.5960 48 1 3.6054 -2.1436 -6.7224 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001185410981.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:34:03 Heat of formation + Delta-G solvation = 46.656636 kcal Electronic energy + Delta-G solvation = -29555.228433 eV Core-core repulsion = 25613.942455 eV Total energy + Delta-G solvation = -3941.285977 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -46.02628 -41.46548 -39.30474 -38.31735 -36.57480 -35.31012 -34.43595 -33.19299 -32.60373 -31.98118 -28.52997 -28.23691 -26.00850 -25.25189 -25.03285 -24.17117 -23.34978 -22.94086 -22.20113 -20.78145 -19.66012 -19.18504 -18.80128 -18.63706 -17.83248 -17.12900 -16.82539 -16.70718 -16.31271 -15.86449 -15.47436 -15.45799 -15.31965 -14.87983 -14.79527 -14.68316 -14.38603 -13.94301 -13.69562 -13.57369 -13.25646 -12.97068 -12.79671 -12.72318 -12.67013 -12.49600 -12.47540 -12.25052 -12.22082 -12.04299 -11.90284 -11.60376 -11.51650 -11.48743 -11.40373 -11.23083 -10.99658 -10.85681 -10.27307 -9.68417 -8.95427 -7.93772 -5.21036 0.03162 0.72443 1.47778 1.49869 1.54226 1.56029 1.65854 2.04618 2.57032 2.79809 3.11811 3.17094 3.39825 3.44004 3.65227 3.72231 3.75233 3.82296 3.87065 3.94928 4.04679 4.19092 4.23186 4.32158 4.38230 4.44239 4.47790 4.66690 4.68699 4.72562 4.73567 4.77153 4.82979 4.85853 4.91661 4.98504 5.05037 5.07973 5.17959 5.18020 5.19212 5.25427 5.32033 5.48401 5.52940 5.61483 6.24532 6.29307 6.95971 7.06735 7.36080 8.13393 8.36794 9.29391 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.014539 B = 0.002878 C = 0.002759 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1925.359133 B = 9728.146333 C =10146.119049 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.090 4.090 3 H 0.096 0.904 4 C 0.121 3.879 5 N -0.589 5.589 6 C 0.605 3.395 7 O -0.564 6.564 8 C -0.270 4.270 9 C 0.031 3.969 10 N -0.371 5.371 11 O 0.088 5.912 12 C 0.073 3.927 13 C -0.117 4.117 14 C -0.145 4.145 15 C -0.152 4.152 16 C 0.106 3.894 17 C -0.119 4.119 18 C -0.078 4.078 19 H 0.071 0.929 20 C 0.159 3.841 21 N -0.742 5.742 22 C -0.245 4.245 23 H 0.071 0.929 24 C -0.072 4.072 25 N -0.967 5.967 26 Si 0.969 3.031 27 H -0.279 1.279 28 H -0.295 1.295 29 H -0.279 1.279 30 H 0.060 0.940 31 H 0.053 0.947 32 H 0.046 0.954 33 H 0.085 0.915 34 H 0.092 0.908 35 H 0.227 0.773 36 H 0.140 0.860 37 H 0.107 0.893 38 H 0.128 0.872 39 H 0.124 0.876 40 H 0.098 0.902 41 H 0.091 0.909 42 H 0.093 0.907 43 H 0.063 0.937 44 H 0.060 0.940 45 H 0.018 0.982 46 H 0.016 0.984 47 H 0.375 0.625 48 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.971 -4.279 20.945 23.184 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.110 4.110 3 H 0.114 0.886 4 C -0.001 4.001 5 N -0.320 5.320 6 C 0.393 3.607 7 O -0.444 6.444 8 C -0.278 4.278 9 C -0.151 4.151 10 N -0.078 5.078 11 O 0.030 5.970 12 C 0.009 3.991 13 C -0.136 4.136 14 C -0.182 4.182 15 C -0.189 4.189 16 C -0.016 4.016 17 C -0.158 4.158 18 C -0.097 4.097 19 H 0.089 0.911 20 C 0.032 3.968 21 N -0.385 5.385 22 C -0.377 4.377 23 H 0.089 0.911 24 C -0.265 4.265 25 N -0.618 5.618 26 Si 0.798 3.202 27 H -0.205 1.205 28 H -0.222 1.222 29 H -0.206 1.206 30 H 0.079 0.921 31 H 0.072 0.928 32 H 0.065 0.935 33 H 0.104 0.896 34 H 0.110 0.890 35 H 0.243 0.757 36 H 0.157 0.843 37 H 0.125 0.875 38 H 0.147 0.853 39 H 0.142 0.858 40 H 0.116 0.884 41 H 0.109 0.891 42 H 0.111 0.889 43 H 0.081 0.919 44 H 0.078 0.922 45 H 0.036 0.964 46 H 0.034 0.966 47 H 0.208 0.792 48 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -9.118 -5.137 21.076 23.531 hybrid contribution 0.651 0.732 -1.329 1.651 sum -8.467 -4.405 19.747 21.933 Atomic orbital electron populations 1.21810 0.94930 1.01391 1.01640 1.21428 0.96544 0.99966 0.93037 0.88602 1.21771 1.00607 0.79081 0.98638 1.47933 1.54551 1.11987 1.17518 1.16896 0.77093 0.84013 0.82715 1.90762 1.58770 1.65304 1.29609 1.21932 0.95885 0.96138 1.13807 1.26797 1.02594 0.86101 0.99575 1.73665 0.92870 1.24203 1.17015 1.84519 1.28073 1.23467 1.60989 1.23998 0.96395 0.83537 0.95145 1.20718 0.84446 1.01209 1.07189 1.23238 0.96500 0.99164 0.99297 1.23243 0.95665 1.03924 0.96039 1.22055 1.01520 0.95217 0.82825 1.21823 1.00833 0.95785 0.97334 1.21192 1.00128 0.94715 0.93663 0.91083 1.20845 0.95419 0.94740 0.85753 1.42558 1.56893 1.37506 1.01563 1.19569 1.22323 1.10525 0.85285 0.91062 1.25483 1.00626 0.99071 1.01312 1.69782 1.37062 1.25737 1.29189 0.85283 0.77533 0.77499 0.79883 1.20521 1.22156 1.20573 0.92076 0.92806 0.93536 0.89647 0.88996 0.75661 0.84270 0.87463 0.85335 0.85754 0.88397 0.89096 0.88925 0.91867 0.92155 0.96369 0.96560 0.79192 0.94034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.29 8.38 71.98 0.60 -2.69 16 2 C -0.09 -2.06 2.72 -10.71 -0.03 -2.09 16 3 H 0.10 2.01 8.14 -2.39 -0.02 1.99 16 4 C 0.12 2.54 5.82 86.36 0.50 3.04 16 5 N -0.59 -13.18 2.41 -822.83 -1.98 -15.17 16 6 C 0.60 15.19 7.52 86.65 0.65 15.85 16 7 O -0.56 -16.95 16.06 -4.06 -0.07 -17.02 16 8 C -0.27 -6.21 5.47 -18.74 -0.10 -6.31 16 9 C 0.03 0.65 10.11 87.29 0.88 1.53 16 10 N -0.37 -8.72 12.01 -54.18 -0.65 -9.37 16 11 O 0.09 1.97 10.86 77.02 0.84 2.81 16 12 C 0.07 1.57 7.00 25.48 0.18 1.75 16 13 C -0.12 -1.98 6.14 -11.54 -0.07 -2.05 16 14 C -0.15 -1.64 10.19 30.62 0.31 -1.33 16 15 C -0.15 -1.96 10.24 30.62 0.31 -1.65 16 16 C 0.11 2.29 6.01 86.36 0.52 2.81 16 17 C -0.12 -3.33 4.90 30.67 0.15 -3.18 16 18 C -0.08 -2.23 1.96 -10.77 -0.02 -2.26 16 19 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 20 C 0.16 6.01 5.19 86.38 0.45 6.45 16 21 N -0.74 -36.39 5.32 -343.44 -1.83 -38.21 16 22 C -0.25 -13.50 9.99 84.03 0.84 -12.66 16 23 H 0.07 3.80 7.83 -2.91 -0.02 3.78 16 24 C -0.07 -4.11 5.50 84.86 0.47 -3.64 16 25 N -0.97 -58.01 13.06 21.65 0.28 -57.73 16 26 Si 0.97 45.65 29.55 68.60 2.03 47.68 16 27 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 28 H -0.30 -14.01 7.11 99.48 0.71 -13.31 16 29 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 30 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 31 H 0.05 1.35 6.59 -2.39 -0.02 1.34 16 32 H 0.05 1.17 5.97 -2.39 -0.01 1.15 16 33 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 34 H 0.09 2.02 7.03 -2.39 -0.02 2.00 16 35 H 0.23 3.24 7.64 -2.91 -0.02 3.22 16 36 H 0.14 2.60 7.66 -2.38 -0.02 2.58 16 37 H 0.11 1.19 8.02 -2.39 -0.02 1.17 16 38 H 0.13 0.94 8.14 -2.39 -0.02 0.92 16 39 H 0.12 1.25 8.14 -2.39 -0.02 1.23 16 40 H 0.10 1.37 8.14 -2.39 -0.02 1.35 16 41 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 42 H 0.09 1.87 4.38 -2.39 -0.01 1.86 16 43 H 0.06 2.10 7.15 -2.39 -0.02 2.09 16 44 H 0.06 1.76 6.34 -2.39 -0.02 1.75 16 45 H 0.02 0.71 6.74 -2.38 -0.02 0.70 16 46 H 0.02 0.63 8.14 -2.39 -0.02 0.61 16 47 H 0.38 19.33 6.84 -92.70 -0.63 18.69 16 48 H 0.25 14.67 8.31 -92.71 -0.77 13.90 16 Total: -1.00 -68.46 381.50 4.62 -63.84 By element: Atomic # 1 Polarization: 29.23 SS G_CDS: 0.35 Total: 29.58 kcal Atomic # 6 Polarization: -12.06 SS G_CDS: 5.64 Total: -6.41 kcal Atomic # 7 Polarization: -116.30 SS G_CDS: -4.18 Total: -120.48 kcal Atomic # 8 Polarization: -14.98 SS G_CDS: 0.77 Total: -14.21 kcal Atomic # 14 Polarization: 45.65 SS G_CDS: 2.03 Total: 47.68 kcal Total: -68.46 4.62 -63.84 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001185410981.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.494 kcal (2) G-P(sol) polarization free energy of solvation -68.456 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.039 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.618 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.838 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.657 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds