Wall clock time and date at job start Tue Mar 31 2020 17:34:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09002 * 109.52208 * 2 1 4 4 C 1.53621 * 109.63410 * 239.91925 * 2 1 3 5 5 N 1.46924 * 108.54364 * 294.86322 * 4 2 1 6 6 C 1.34781 * 120.63228 * 126.36654 * 5 4 2 7 7 O 1.21609 * 119.99616 * 3.96963 * 6 5 4 8 8 C 1.47395 * 120.00400 * 183.96459 * 6 5 4 9 9 C 1.47102 * 128.56874 * 313.65028 * 8 6 5 10 10 N 1.30006 * 105.33303 * 180.23659 * 9 8 6 11 11 O 1.20659 * 112.30192 * 359.53091 * 10 9 8 12 12 C 1.33495 * 113.15402 * 0.50243 * 11 10 9 13 13 C 1.50702 * 126.83159 * 179.66687 * 12 11 10 14 14 C 1.53004 * 117.49588 * 8.79027 * 13 12 11 15 15 C 1.53000 * 117.50043 * 300.13465 * 13 12 11 16 16 C 1.46921 * 118.74235 * 306.09560 * 5 4 2 17 17 C 1.53194 * 108.77435 * 53.85685 * 16 5 4 18 18 C 1.53035 * 109.49483 * 120.08280 * 2 1 3 19 19 H 1.09009 * 109.44885 * 178.59818 * 18 2 1 20 20 C 1.53000 * 109.46449 * 298.56457 * 18 2 1 21 21 N 1.46494 * 109.47322 * 185.07006 * 20 18 2 22 22 C 1.36937 * 120.00317 * 180.02562 * 21 20 18 23 23 H 1.08007 * 119.99543 * 0.02562 * 22 21 20 24 24 C 1.38808 * 120.00360 * 180.02562 * 22 21 20 25 25 N 1.31612 * 120.00142 * 359.97438 * 24 22 21 26 26 Si 1.86806 * 120.00069 * 179.97438 * 24 22 21 27 27 H 1.48507 * 109.46971 * 359.97438 * 26 24 22 28 28 H 1.48496 * 109.47130 * 119.99715 * 26 24 22 29 29 H 1.48495 * 109.47189 * 240.00284 * 26 24 22 30 30 H 1.08993 * 109.47283 * 299.91546 * 1 2 3 31 31 H 1.08998 * 109.47005 * 59.91393 * 1 2 3 32 32 H 1.09003 * 109.46798 * 179.91672 * 1 2 3 33 33 H 1.08999 * 109.74006 * 175.12613 * 4 2 1 34 34 H 1.08999 * 109.66402 * 54.55921 * 4 2 1 35 35 H 1.08008 * 127.32799 * 359.97239 * 9 8 6 36 36 H 1.09003 * 115.55174 * 154.45234 * 13 12 11 37 37 H 1.09000 * 117.49670 * 0.02562 * 14 13 12 38 38 H 1.08998 * 117.49921 * 145.01517 * 14 13 12 39 39 H 1.09000 * 117.49665 * 214.97706 * 15 13 12 40 40 H 1.09002 * 117.49744 * 359.97016 * 15 13 12 41 41 H 1.09000 * 109.58996 * 173.64368 * 16 5 4 42 42 H 1.09003 * 109.58874 * 293.93375 * 16 5 4 43 43 H 1.09008 * 109.49661 * 65.32147 * 17 16 5 44 44 H 1.09001 * 109.50119 * 185.38204 * 17 16 5 45 45 H 1.08997 * 109.46808 * 305.07293 * 20 18 2 46 46 H 1.09005 * 109.46860 * 65.06995 * 20 18 2 47 47 H 0.97003 * 120.00221 * 359.97438 * 21 20 18 48 48 H 0.97003 * 120.00636 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8943 1.0274 0.0000 4 6 2.0462 -0.7252 -1.2520 5 7 1.6516 -2.1381 -1.1697 6 6 0.9748 -2.7220 -2.1784 7 8 0.7481 -2.1001 -3.1986 8 6 0.5095 -4.1142 -2.0451 9 6 1.2527 -5.2870 -1.5591 10 7 0.4167 -6.2797 -1.6357 11 8 -0.6621 -5.9385 -2.0547 12 6 -0.7253 -4.6367 -2.3436 13 6 -1.9145 -3.8891 -2.8896 14 6 -3.2490 -4.6347 -2.9534 15 6 -2.4738 -4.3409 -4.2401 16 6 2.0140 -2.9040 0.0306 17 6 1.5031 -2.1558 1.2659 18 6 2.0408 -0.7231 1.2483 19 1 3.1306 -0.7445 1.2350 20 6 1.5607 0.0169 2.4984 21 7 2.1480 -0.6031 3.6887 22 6 1.8593 -0.1074 4.9321 23 1 1.1983 0.7405 5.0353 24 6 2.4163 -0.6945 6.0599 25 7 3.2214 -1.7280 5.9342 26 14 2.0230 -0.0177 7.7560 27 1 1.1004 1.1387 7.6259 28 1 1.3783 -1.0762 8.5740 29 1 3.2779 0.4229 8.4164 30 1 -0.3633 0.5125 0.8907 31 1 -0.3633 0.5152 -0.8892 32 1 -0.3633 -1.0277 -0.0015 33 1 3.1327 -0.6514 -1.2985 34 1 1.6089 -0.2750 -2.1432 35 1 2.2764 -5.3176 -1.2161 36 1 -1.9438 -2.8231 -2.6638 37 1 -3.2669 -5.6657 -2.6001 38 1 -4.1563 -4.0591 -2.7700 39 1 -2.8713 -3.5722 -4.9028 40 1 -1.9813 -5.1786 -4.7340 41 1 1.5554 -3.8918 -0.0140 42 1 3.0979 -3.0064 0.0853 43 1 0.4132 -2.1356 1.2540 44 1 1.8476 -2.6632 2.1669 45 1 1.8685 1.0610 2.4431 46 1 0.4737 -0.0387 2.5586 47 1 2.7409 -1.3653 3.5961 48 1 3.6104 -2.1386 6.7223 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001185410982.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:34:06 Heat of formation + Delta-G solvation = 65.029192 kcal Electronic energy + Delta-G solvation = -29471.213385 eV Core-core repulsion = 25530.724102 eV Total energy + Delta-G solvation = -3940.489284 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -45.16537 -40.41321 -38.19085 -37.64646 -35.04958 -34.19775 -33.16376 -31.93754 -31.63524 -30.36182 -27.25770 -27.04087 -24.77412 -24.45635 -23.50978 -23.05576 -22.79265 -21.75044 -21.15555 -19.77209 -18.52684 -18.04363 -17.78641 -17.18634 -16.91666 -16.12400 -15.96372 -15.39854 -15.00781 -14.70642 -14.31542 -14.16176 -14.04655 -13.77855 -13.66786 -13.52971 -12.95235 -12.64662 -12.55464 -12.45222 -12.22415 -12.01155 -11.89085 -11.63180 -11.50586 -11.45715 -11.08509 -10.96099 -10.86954 -10.81280 -10.61550 -10.38999 -10.32940 -10.22864 -10.01640 -9.89319 -9.66842 -9.44755 -8.88567 -8.66631 -6.92796 -5.78965 -3.06885 0.88830 1.59066 2.45231 2.55871 2.99702 3.40134 3.41567 3.47543 3.49487 3.90230 3.96789 4.30410 4.36514 4.50074 4.56343 4.57697 4.76754 4.91301 4.95481 4.99862 5.10021 5.15628 5.20906 5.23937 5.42515 5.45204 5.49616 5.52637 5.58808 5.62655 5.67252 5.68404 5.74407 5.80584 5.83323 6.01980 6.04976 6.16013 6.25227 6.33550 6.42768 6.43870 6.62612 6.78282 6.91095 7.24093 7.68890 7.90768 7.97709 8.40450 9.51740 10.09928 10.44314 11.44080 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.015477 B = 0.002796 C = 0.002664 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1808.758066 B =10012.374518 C =10509.682731 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.098 4.098 3 H 0.083 0.917 4 C 0.118 3.882 5 N -0.593 5.593 6 C 0.599 3.401 7 O -0.534 6.534 8 C -0.246 4.246 9 C 0.023 3.977 10 N -0.350 5.350 11 O 0.094 5.906 12 C 0.066 3.934 13 C -0.088 4.088 14 C -0.165 4.165 15 C -0.152 4.152 16 C 0.098 3.902 17 C -0.126 4.126 18 C -0.089 4.089 19 H 0.072 0.928 20 C 0.159 3.841 21 N -0.732 5.732 22 C -0.237 4.237 23 H 0.070 0.930 24 C -0.014 4.014 25 N -0.934 5.934 26 Si 0.905 3.095 27 H -0.281 1.281 28 H -0.292 1.292 29 H -0.292 1.292 30 H 0.063 0.937 31 H 0.048 0.952 32 H 0.054 0.946 33 H 0.070 0.930 34 H 0.092 0.908 35 H 0.203 0.797 36 H 0.141 0.859 37 H 0.105 0.895 38 H 0.109 0.891 39 H 0.109 0.891 40 H 0.100 0.900 41 H 0.084 0.916 42 H 0.074 0.926 43 H 0.068 0.932 44 H 0.088 0.912 45 H 0.018 0.982 46 H 0.021 0.979 47 H 0.383 0.617 48 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.150 -4.831 -20.887 22.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.118 4.118 3 H 0.101 0.899 4 C -0.003 4.003 5 N -0.325 5.325 6 C 0.386 3.614 7 O -0.412 6.412 8 C -0.254 4.254 9 C -0.159 4.159 10 N -0.055 5.055 11 O 0.033 5.967 12 C 0.002 3.998 13 C -0.107 4.107 14 C -0.202 4.202 15 C -0.190 4.190 16 C -0.025 4.025 17 C -0.164 4.164 18 C -0.108 4.108 19 H 0.090 0.910 20 C 0.031 3.969 21 N -0.376 5.376 22 C -0.368 4.368 23 H 0.088 0.912 24 C -0.210 4.210 25 N -0.583 5.583 26 Si 0.737 3.263 27 H -0.206 1.206 28 H -0.219 1.219 29 H -0.219 1.219 30 H 0.082 0.918 31 H 0.067 0.933 32 H 0.073 0.927 33 H 0.088 0.912 34 H 0.110 0.890 35 H 0.220 0.780 36 H 0.158 0.842 37 H 0.124 0.876 38 H 0.127 0.873 39 H 0.128 0.872 40 H 0.119 0.881 41 H 0.102 0.898 42 H 0.092 0.908 43 H 0.086 0.914 44 H 0.107 0.893 45 H 0.035 0.965 46 H 0.039 0.961 47 H 0.217 0.783 48 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -8.278 -5.697 -21.005 23.285 hybrid contribution 0.525 0.822 1.173 1.525 sum -7.753 -4.875 -19.833 21.845 Atomic orbital electron populations 1.21861 0.94930 1.01895 1.01553 1.21554 0.96629 0.99521 0.94079 0.89852 1.21832 0.99626 0.79540 0.99350 1.47939 1.54949 1.11872 1.17790 1.16832 0.77729 0.83786 0.83051 1.90796 1.57457 1.64483 1.28501 1.21933 0.95026 0.96353 1.12045 1.26404 1.01876 0.86877 1.00730 1.73674 0.92499 1.23529 1.15799 1.84535 1.28160 1.23443 1.60593 1.23585 0.95862 0.83792 0.96548 1.20501 0.89249 0.98497 1.02493 1.23150 0.93940 1.02014 1.01091 1.23096 1.02136 1.03697 0.90036 1.22100 1.00594 0.95398 0.84364 1.21959 1.01391 0.96050 0.97037 1.21314 1.00311 0.94596 0.94548 0.90952 1.20708 0.95893 0.94654 0.85638 1.42387 1.56785 1.37603 1.00874 1.19267 1.22880 1.10850 0.83829 0.91244 1.24719 1.00097 0.98399 0.97810 1.69654 1.35711 1.24472 1.28451 0.86138 0.77422 0.78010 0.84766 1.20589 1.21892 1.21892 0.91835 0.93294 0.92703 0.91177 0.88986 0.77999 0.84157 0.87613 0.87304 0.87217 0.88109 0.89812 0.90767 0.91378 0.89342 0.96460 0.96113 0.78323 0.93596 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.79 8.39 37.16 0.31 -1.48 16 2 C -0.10 -1.20 2.72 -90.28 -0.25 -1.45 16 3 H 0.08 0.97 8.14 -51.93 -0.42 0.54 16 4 C 0.12 1.36 5.86 -3.49 -0.02 1.34 16 5 N -0.59 -7.08 2.40 -173.79 -0.42 -7.50 16 6 C 0.60 7.83 7.52 -12.53 -0.09 7.73 16 7 O -0.53 -8.26 16.53 5.27 0.09 -8.17 16 8 C -0.25 -2.93 5.47 -102.89 -0.56 -3.49 16 9 C 0.02 0.25 10.11 -14.73 -0.15 0.10 16 10 N -0.35 -4.24 12.01 31.80 0.38 -3.86 16 11 O 0.09 1.07 10.86 18.64 0.20 1.28 16 12 C 0.07 0.72 7.00 -34.63 -0.24 0.48 16 13 C -0.09 -0.79 6.15 -91.77 -0.56 -1.35 16 14 C -0.17 -1.08 10.19 -26.69 -0.27 -1.35 16 15 C -0.15 -1.06 10.24 -26.70 -0.27 -1.33 16 16 C 0.10 1.12 6.01 -3.71 -0.02 1.10 16 17 C -0.13 -1.79 4.90 -26.61 -0.13 -1.92 16 18 C -0.09 -1.31 1.96 -90.58 -0.18 -1.49 16 19 H 0.07 1.11 8.14 -51.92 -0.42 0.68 16 20 C 0.16 3.03 5.18 -4.04 -0.02 3.01 16 21 N -0.73 -17.84 5.32 -59.91 -0.32 -18.16 16 22 C -0.24 -6.52 9.99 -15.06 -0.15 -6.67 16 23 H 0.07 1.88 7.83 -52.48 -0.41 1.46 16 24 C -0.01 -0.41 5.50 -17.44 -0.10 -0.51 16 25 N -0.93 -27.73 13.06 55.49 0.72 -27.01 16 26 Si 0.91 22.22 29.55 -169.99 -5.02 17.20 16 27 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 28 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 29 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 30 H 0.06 0.83 6.58 -51.93 -0.34 0.48 16 31 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.05 0.71 5.97 -51.93 -0.31 0.40 16 33 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.09 1.10 7.03 -51.93 -0.36 0.73 16 35 H 0.20 1.64 7.64 -52.48 -0.40 1.24 16 36 H 0.14 1.30 8.14 -51.93 -0.42 0.87 16 37 H 0.11 0.68 8.02 -51.93 -0.42 0.27 16 38 H 0.11 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.11 0.63 8.14 -51.93 -0.42 0.20 16 40 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 41 H 0.08 0.90 4.37 -51.93 -0.23 0.68 16 42 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 43 H 0.07 1.00 6.34 -51.92 -0.33 0.67 16 44 H 0.09 1.45 7.15 -51.93 -0.37 1.08 16 45 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 46 H 0.02 0.41 6.74 -51.93 -0.35 0.06 16 47 H 0.38 9.70 6.85 -40.82 -0.28 9.43 16 48 H 0.25 7.31 8.31 -40.82 -0.34 6.97 16 LS Contribution 382.48 15.07 5.76 5.76 Total: -1.00 -32.22 382.48 -8.47 -40.69 By element: Atomic # 1 Polarization: 14.20 SS G_CDS: -7.16 Total: 7.03 kcal Atomic # 6 Polarization: -4.56 SS G_CDS: -2.71 Total: -7.27 kcal Atomic # 7 Polarization: -56.90 SS G_CDS: 0.37 Total: -56.53 kcal Atomic # 8 Polarization: -7.19 SS G_CDS: 0.29 Total: -6.90 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -5.02 Total: 17.20 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -32.22 -8.47 -40.69 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001185410982.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.721 kcal (2) G-P(sol) polarization free energy of solvation -32.218 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.503 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.691 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds